View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5454_low_3 (Length: 352)
Name: NF5454_low_3
Description: NF5454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5454_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 333
Target Start/End: Complemental strand, 48021053 - 48020743
Alignment:
| Q |
17 |
caaaggtcgcgagcttaaaaacaaaacaaaactatttatctacaagtatatgctacaatggctattaatatcaccacctaagatttgcacaccaacttag |
116 |
Q |
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|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48021053 |
caaaggtcgcgagcttaacaacaaaactaaactatttatctacaagtatatgctacaatggctattaatatcaccacctaagatttgcacaccaacttag |
48020954 |
T |
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| Q |
117 |
attgtgcaatgacaagcagtgctgtgaaagagcagctctataacgctacagtttagtaggatttaaacaaaccaccactgttctgcaatacaccatctag |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
48020953 |
attgtgcaatgacaagcagtgctgtgaaagagcagctctataacgctacagtttagtaggatttaaacaaaccactactgttctgcaatacaccatctag |
48020854 |
T |
|
| Q |
217 |
tacattgtagttatagaacagtagtatagcggaacatgaacaaaccgctgnnnnnnnaaatccacggttgataacatgataacaacaatttattcacagg |
316 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
48020853 |
tacatcgtagttatagaacagtagtatagcggaacatgaacaaaccgctgtttttttaaatccacggt--------tgataacaacaatttattcacagg |
48020762 |
T |
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| Q |
317 |
at--tcagctggtacttga |
333 |
Q |
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|| ||||||||||||||| |
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| T |
48020761 |
ataatcagctggtacttga |
48020743 |
T |
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