View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5454_low_4 (Length: 336)
Name: NF5454_low_4
Description: NF5454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5454_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 37 - 329
Target Start/End: Complemental strand, 28290663 - 28290371
Alignment:
| Q |
37 |
gaaaatcaaattaacacaattcaatataaaaggaaaatgaacttacttgcagccaaagaaacctcttttcacagtcaacgcggagggatgttcagctttt |
136 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28290663 |
gaaaatcaaataaacacaattcaatataaaaggaaaatgaacttacttgcagccaaagaaacctcttttcacagtcaacacggagggatgttcagctttt |
28290564 |
T |
|
| Q |
137 |
agaatgtgatgcttggtttgatcaattaagctgcatataagacataccaaaagtaagcagaataacttgcttgtcacccattccgctaaaataaacaatt |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28290563 |
agaatgtgatgcttggtttgatcaattaagctgcatataagacataccaaaagtaagcagaataacttgcttgtcacccattccgctaaaataaacaatt |
28290464 |
T |
|
| Q |
237 |
acgccaaatttataaatcaactaatggcagtaccgaattttctcctgagcagactctccccacatcagaaacacgaccccttccttcttctca |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28290463 |
acgccaaatttataaatcaactaatggcagtaccgaattttctcctgagcagactctccccacatcagaaacacgaccccttccttcttctca |
28290371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 76 - 328
Target Start/End: Complemental strand, 28282348 - 28282097
Alignment:
| Q |
76 |
aacttacttgcagccaaagaaacctcttttcacagtcaacgcggagggatgttcagcttttagaatgtgatgcttggtttgatcaattaagctgcatata |
175 |
Q |
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||||||||||||||| |||||||||| ||||||||| | || |||||||||||||| ||||| ||||||||||||||||||||||||||| ||||| |
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| T |
28282348 |
aacttacttgcagccgaagaaacctcctttcacagtagctccagaaggatgttcagctttcagaatatgatgcttggtttgatcaattaagctgaatata |
28282249 |
T |
|
| Q |
176 |
agacataccaaaagtaagcagaataacttgcttgtcacccattccgctaaaataaacaattacgccaaatttata-aatcaactaatggcagtaccgaat |
274 |
Q |
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| T |
28282248 |
agaca--cccaaagtgagaagaataacttgcttgtcgcccattccgctaaaataaacaattacgccaaatttatagaatcaactaatggcagtaccgaat |
28282151 |
T |
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| Q |
275 |
tttctcctgagcagactctccccacatcagaaacacgaccccttccttcttctc |
328 |
Q |
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||||||||||||| |||||||||||| ||||||||| | |||||||||||||| |
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| T |
28282150 |
tttctcctgagcatactctccccacagcagaaacacaagtccttccttcttctc |
28282097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 78 - 178
Target Start/End: Complemental strand, 19251244 - 19251144
Alignment:
| Q |
78 |
cttacttgcagccaaagaaacctcttttcacagtcaacgcggagggatgttcagcttttagaatgtgatgcttggtttgatcaattaagctgcatataag |
177 |
Q |
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||||||||||||||||||||||| |||||||||||||| | ||||||||| |||||||||||||||||||||||||| |||||||| |||||| ||||| |
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| T |
19251244 |
cttacttgcagccaaagaaaccttttttcacagtcaactcagagggatgtgcagcttttagaatgtgatgcttggttgcatcaattatgctgcacataag |
19251145 |
T |
|
| Q |
178 |
a |
178 |
Q |
| |
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| |
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|
| T |
19251144 |
a |
19251144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 28290745 - 28290673
Alignment:
| Q |
1 |
agaagttggatagttttagagaagtgcctgttcagagaaaatcaaattaacacaattcaatataaaaggaaaa |
73 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28290745 |
agaagttggttagttttagagaagtgcctgttcagagaaaatcaaattaacacaattcaatataaaaggaaaa |
28290673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 78 - 214
Target Start/End: Original strand, 29558345 - 29558474
Alignment:
| Q |
78 |
cttacttgcagccaaagaaacctcttttcacagtcaacgcggagggatgttcagcttttagaatgtgatgcttggtttgatcaatt-aagctgcatataa |
176 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||| |||| ||||| |||||||| ||||||||||||||||||||||||||| || ||||||| || |
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| T |
29558345 |
cttacttgcagccgaagaaacctcttttcacagtcaacacggaaggatgctcagctttcagaatgtgatgcttggtttgatcaattaaaactgcatacaa |
29558444 |
T |
|
| Q |
177 |
gacataccaaaagtaagcagaataacttgcttgtcacc |
214 |
Q |
| |
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| |||||||||||||||||||| |||||||| |
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| T |
29558445 |
g--------aaagtaagcagaataacttgtttgtcacc |
29558474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 29557958 - 29558011
Alignment:
| Q |
1 |
agaagttggatagttttagagaagtgcctgttcagagaaaatcaaattaacaca |
54 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29557958 |
agaagttggttagttttagagaagtgcctgttcagagaaaatcaaataaacaca |
29558011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 28278594 - 28278529
Alignment:
| Q |
76 |
aacttacttgcagccaaagaaacctcttttcacagtcaacgcggagggatgttcagcttttagaat |
141 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||| |||||||||| ||||||| ||||| |
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| T |
28278594 |
aacttacttgcagctaaagaaacctctttccacagtcaacctggagggatgtgcagctttcagaat |
28278529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 259 - 327
Target Start/End: Complemental strand, 28303190 - 28303122
Alignment:
| Q |
259 |
aatggcagtaccgaattttctcctgagcagactctccccacatcagaaacacgaccccttccttcttct |
327 |
Q |
| |
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||||| |||||| || ||||||||||||||||| |||||||| ||||||||| || ||||||||||||| |
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| T |
28303190 |
aatggtagtacctaagtttctcctgagcagactttccccacagcagaaacacaactccttccttcttct |
28303122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 28283096 - 28283047
Alignment:
| Q |
6 |
ttggatagttttagagaagtgcctgttcagagaaaatcaaattaacacaa |
55 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28283096 |
ttggttagttttagagaagtgcctgttcagagaaaatcaaacaaacacaa |
28283047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 165
Target Start/End: Complemental strand, 28303558 - 28303471
Alignment:
| Q |
78 |
cttacttgcagccaaagaaacctcttttcacagtcaacgcggagggatgttcagcttttagaatgtgatgcttggtttgatcaattaa |
165 |
Q |
| |
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||||| |||| |||||||| ||||| ||| ||| ||| |||| |||||| ||||||||||||||||||| |||||| ||||||||| |
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| T |
28303558 |
cttacctgcaaccaaagaagcctctattcgcagacaaaccggaaggatgtgcagcttttagaatgtgatgtttggttgcatcaattaa |
28303471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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