View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5454_low_5 (Length: 335)
Name: NF5454_low_5
Description: NF5454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5454_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 59 - 326
Target Start/End: Original strand, 9546349 - 9546619
Alignment:
| Q |
59 |
gttgttgttcatactgatcatcttgatgttgttgatcatgacgttgtgtatgagttttccatatgttgttatcttcgcgagacaatgatatgagnnnnnn |
158 |
Q |
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| T |
9546349 |
gttgttgttcatactgatcatcttgatgctgttgatcatgacgttgtgtatgagttttccatatgttgttatcttcgcgagacaatgatatgagaaaaaa |
9546448 |
T |
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| Q |
159 |
ngctacttcttcttcagttgttatatccgatgaagaactcagtacagaaacagactcattctgtactgagtttttcaccggatc---atctttcttgacc |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
9546449 |
agctacttcttcttcagttgttatatccgatgaagaactcagtacagaaaaagactcgttctgtactgagtttttcaccggatcattatctttcttgacc |
9546548 |
T |
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| Q |
256 |
cgtttggatcgtggaccagttggattctttgatgattcagtttcactttctctatcttcctgaagaattat |
326 |
Q |
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|||||||||||||| ||||||||||||||||| || |||||||||||| |||||||||||||||||||||| |
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| T |
9546549 |
cgtttggatcgtggtccagttggattctttgacgactcagtttcacttcctctatcttcctgaagaattat |
9546619 |
T |
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