View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5454_low_6 (Length: 284)
Name: NF5454_low_6
Description: NF5454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5454_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 8 - 281
Target Start/End: Complemental strand, 48021301 - 48021036
Alignment:
| Q |
8 |
catcatcaaaatcaaaacataatcgcattaggtttggcgatgatcaagttcaaacactctacagctaagagcctgagatatacttgagaaattgagactt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48021301 |
catcatcaaaatcaaaacataatcgcattaggtttggcgatgatcaagttcaaacactctacagctaagagcctgagatatacttgagaaattgagactt |
48021202 |
T |
|
| Q |
108 |
gagaaactaactaactaactaatcataagtgaaacggttgagaaacttgagacaaattggtattcttaatcaacactaacaagtgattcatctcaaattg |
207 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
48021201 |
gagaaactaactaa--------tcataagtgaaacggttgagaaacttgagacaaattgttattcttaatcaacactaacaagtgattcatctcaaattg |
48021110 |
T |
|
| Q |
208 |
tgtactacattcaaaccttaaacaacataaactgcgtagagcaaagagtagtttatcaaaggtcgcgagcttaa |
281 |
Q |
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||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
48021109 |
tgtaccaccttcaaaccttaaacaacataaactgtgtagagcaaagagtagtttatcaaaggtcgcgagcttaa |
48021036 |
T |
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