View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5454_low_9 (Length: 271)
Name: NF5454_low_9
Description: NF5454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5454_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 10 - 256
Target Start/End: Original strand, 756018 - 756267
Alignment:
| Q |
10 |
aatatcctttttcaacaatagtgacaataaagacgttgtgatttatggatgtattagtatttattttaataatcaattgaatttttagtatagttgagaa |
109 |
Q |
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| T |
756018 |
aatattctttttcaacaatagtgacaataaagacgttgtgatttatggatgtattaggatttattttaataatcaattgaatttttagtatagttgagaa |
756117 |
T |
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| Q |
110 |
tagaccagatcgatttatagggacctaccagcccaagtcaagcatgac---nnnnnnncttaaataaaaaagacttaagcttttttagaagtctatttag |
206 |
Q |
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| T |
756118 |
tagactagaccggtttatagggacctaccggcccaagtcaagcatgactttttttttttttaaataaaaaagacttaagtttttttagaaatctatttag |
756217 |
T |
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| Q |
207 |
ttaaaaggcttatgtcatagaccataagaaaagtatttactagtaatatc |
256 |
Q |
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| T |
756218 |
ttaaaaggcttatgtcatagaccataagaaaagtatttactagtaatatc |
756267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 2759396 - 2759356
Alignment:
| Q |
165 |
cttaaataaaaaagacttaagcttttttagaagtctattta |
205 |
Q |
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| T |
2759396 |
cttaaatagagaagacctaagcttttttagaagtctattta |
2759356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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