View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5455-Insertion-2 (Length: 815)

Name: NF5455-Insertion-2
Description: NF5455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5455-Insertion-2
NF5455-Insertion-2
[»] chr8 (8 HSPs)
chr8 (277-815)||(18114964-18115516)
chr8 (8-227)||(18114695-18114914)
chr8 (8-170)||(18099452-18099614)
chr8 (8-170)||(18083984-18084146)
chr8 (436-491)||(18084390-18084445)
chr8 (698-779)||(18099724-18099806)
chr8 (153-226)||(18084160-18084228)
chr8 (534-580)||(18084482-18084528)


Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 277 - 815
Target Start/End: Original strand, 18114964 - 18115516
Alignment:
Q  277 aaacaaaatcatgttcttatgcaaattttaccagtcccttccattattatctatttttgt-gttgtgatatagtgtaagagttggcatgttgcggtcggg 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||    
T  18114964 aaacaaaatcatgttcttatgcaaattttaccagtcccttccattattatctattttttttgttgtgatatagtgtaagagttggcatgttgcggtaggg 18115063  T
Q  376 attaacctgaatcagtgacacaaatattaccatttcccttatggtggatttttcaactataaatttaatgatttctgtcaactgtttggtgtcctagtat 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18115064 attaacctgaatcagtgacacaaatattaccatttcccttatggtggatttttcaactataaatttaatgatttctgtcaactgtttggtgtcctagtat 18115163  T
Q  476 gcttagtgttatttttggagaagacatactatatagtatatagatatagaagcaatg-----------------ttggagaaaggtaaactctgttttgg 558  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||                 ||||||||||||||||||||||||||    
T  18115164 gcttagtgttatttttggagaagacatac--tatagtatatagatatagaagcaatgttggatgacccacaacattggagaaaggtaaactctgttttgg 18115261  T
Q  559 ccctttttaggaggagcttggaaaggatccatt-actctccagatgcattgcacttggtggatactgcatgtacttgtcacgttagacatatgggtttta 657  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  18115262 ccctttttaggaggagcttggaaaggatccattgactctccagatacattgcacttggtggatactgcatgtacttgtcacgttagacatat-ggtttta 18115360  T
Q  658 gtacgtaggctttgatacccatgttcaaatcctcctcatcacaagtggctctagcatgggggaaatagttttacatcagtcca-tttggatgaattagct 756  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  18115361 gtacataggctttgatacccattttcaaatcctcctcatcacaagtggctctagcat-ggggaaatagttttacatcagtccattttggatgaattagct 18115459  T
Q  757 tgagaaataggatagtacctaaaacgtgtatttagtcttttactttttgaagaatcatg 815  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||| || ||||||||    
T  18115460 tgagaaataggatagtacct-aaacgtgtatttagtc-tttacttttggaggaatcatg 18115516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 8 - 227
Target Start/End: Original strand, 18114695 - 18114914
Alignment:
Q  8 ttatgaagatattttgaatctggggtataaggtcattctacttacagggcggagtgaaagtcatagggctgttactgttgataatttgataaatgccggg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18114695 ttatgaagatattttgaatctggggtataaggtcattctacttacagggcggagtgaaagtcatagggctgttactgttgataatttgataaatgccggg 18114794  T
Q  108 tttcgggattggcaccagctcatattaaggtaattcctacaaagcttgttaagtctatatgttaaatactcaaatatttgaatataatacatgtgtgtaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18114795 tttcgggattggcaccagctcatattaaggtaattcctacaaagcttgttaagtctatatgttaaatgctcaaatatttgaatataatacatgtgtgtaa 18114894  T
Q  208 tgcttatgtgatgtagatga 227  Q
    ||||||||||||||||||||    
T  18114895 tgcttatgtgatgtagatga 18114914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 8 - 170
Target Start/End: Original strand, 18099452 - 18099614
Alignment:
Q  8 ttatgaagatattttgaatctggggtataaggtcattctacttacagggcggagtgaaagtcatagggctgttactgttgataatttgataaatgccggg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  18099452 ttatgaagatattttgaatctggggtataaggtcattctacttacagggcggagtgaaagtcatagggctgttactgttgataatttgataaatgcctgc 18099551  T
Q  108 tttcgggattggcaccagctcatattaaggtaattcctacaaagcttgttaagtctatatgtt 170  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||    
T  18099552 tttcgggattggcaccagctcatattaaggtaattcccacaaagcttgttaagcctgtatgtt 18099614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 8 - 170
Target Start/End: Original strand, 18083984 - 18084146
Alignment:
Q  8 ttatgaagatattttgaatctggggtataaggtcattctacttacagggcggagtgaaagtcatagggctgttactgttgataatttgataaatgccggg 107  Q
    |||||||||| |||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||     
T  18083984 ttatgaagatgttttgaatttggggtataaggtcattttacttgcagggtggagtgaaagtcatgggactgttactgttgataatttgataaatgccggc 18084083  T
Q  108 tttcgggattggcaccagctcatattaaggtaattcctacaaagcttgttaagtctatatgtt 170  Q
    ||| ||||||||||||| ||||| ||||||||||||| ||||||||||||||| |||||||||    
T  18084084 ttttgggattggcaccatctcattttaaggtaattcccacaaagcttgttaagcctatatgtt 18084146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 436 - 491
Target Start/End: Original strand, 18084390 - 18084445
Alignment:
Q  436 aaatttaatgatttctgtcaactgtttggtgtcctagtatgcttagtgttattttt 491  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||    
T  18084390 aaatttaatgatttctgtcaactgtttggtgtcctagcatgcttaatgtttttttt 18084445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 698 - 779
Target Start/End: Original strand, 18099724 - 18099806
Alignment:
Q  698 acaagtggctctagcatgggggaaatagttttacatcagt-ccatttggatgaattagcttgagaaataggatagtacctaaa 779  Q
    ||||||| |||| |||||||| |||||||||||||||||| || |||||||||||||||||| ||| |  |||||||||||||    
T  18099724 acaagtgactctggcatggggcaaatagttttacatcagtcccttttggatgaattagcttgcgaattgagatagtacctaaa 18099806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 18084160 - 18084228
Alignment:
Q  153 ttgttaagtctatatgttaaatactcaaatatttgaatataatacatgtgtgtaatgcttatgtgatgtagatg 226  Q
    |||||||| ||||||||||||| | |||| |||||||||||     ||||||||||||||||||||||||||||    
T  18084160 ttgttaagcctatatgttaaatgcacaaagatttgaatata-----tgtgtgtaatgcttatgtgatgtagatg 18084228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 534 - 580
Target Start/End: Original strand, 18084482 - 18084528
Alignment:
Q  534 tggagaaaggtaaactctgttttggccctttttaggaggagcttgga 580  Q
    |||||||||||||||| ||||||||| | ||| ||||||||||||||    
T  18084482 tggagaaaggtaaactttgttttggctcatttaaggaggagcttgga 18084528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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