View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5456_high_2 (Length: 255)
Name: NF5456_high_2
Description: NF5456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5456_high_2 |
 | |
|
| [»] scaffold0190 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 7606156 - 7606404
Alignment:
| Q |
1 |
tactaccttcttctattccagcaaatacatttacaattccatttattttatatccactacgaactgctataggttttccccatccgaaatcattaccata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7606156 |
tactaccttcttctattccagcaaatacatttacaattccatttattttatatccactacgaactgctataggttttccccatccgaaatcattaccata |
7606255 |
T |
|
| Q |
101 |
aacatcaaaccatggagaactactaatggatatgaaattattattggacatgctagcaaccctaacaaagcttggatttcttaaccaagactcatagtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7606256 |
aacatcaaaccatggagaactactaatggatatgaaattattattggacatgctagcaaccctaacaaagcttggatttcttaaccaagactcatagtga |
7606355 |
T |
|
| Q |
201 |
ttcttcaacttctcatccgtgtgtgaagcaattaacttgttcatctcac |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7606356 |
ttcttcaacttctcatccgtgtgtgaagcaattaatttgttcatctcac |
7606404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 7636984 - 7637233
Alignment:
| Q |
1 |
tactaccttcttctattccagcaaatacatttacaattccatttattttatatccactacgaactgctataggttttccccatccgaaatcattaccata |
100 |
Q |
| |
|
||||||||||||||||||| |||||||| | | || |||||||||||||||||||||||||||||| | ||| ||||||||||| |||||||||||||| |
|
|
| T |
7636984 |
tactaccttcttctattccggcaaataccgtaataagtccatttattttatatccactacgaactgccagaggctttccccatccaaaatcattaccata |
7637083 |
T |
|
| Q |
101 |
aacatcaaaccatggagaactactaatggatatgaaattattattggacatg---ctagcaaccctaacaaagcttggatttcttaaccaagactcatag |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||| |||||| ||||| ||||||||||||||||||||||||||| || |
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|
| T |
7637084 |
aacatcaaaccatggagaactactaatggatatgaaattattttttaccatgttcttagcaagcctaaaaaagcttggatttcttaaccaagactcgtaa |
7637183 |
T |
|
| Q |
198 |
tgattcttcaacttctcatccgtgtgtgaagcaattaacttgttcatctc |
247 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7637184 |
tgattcttcaacttctcatcagtgtgtgaagcaattaacttgttcatctc |
7637233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 7615170 - 7615418
Alignment:
| Q |
1 |
tactaccttcttctattccagcaaatacatttacaattccatttattttatatccactacgaactgctataggttttccccatccgaaatcattaccata |
100 |
Q |
| |
|
||||||||||||||||||||||||| || | | || ||||||| ||||||||||||||||||||| | ||| |||||||| || |||||||||||||| |
|
|
| T |
7615170 |
tactaccttcttctattccagcaaaaaccgtaataagtccatttcctttatatccactacgaactgccacaggctttccccaaccaaaatcattaccata |
7615269 |
T |
|
| Q |
101 |
aacatcaaaccatggagaactactaatggatatgaaattattattggacatgctagcaaccctaacaaagcttggatttcttaaccaagactcatagtga |
200 |
Q |
| |
|
|||||||||||| |||||||| ||||||| |||||||||||| || | |||| ||| | |||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
7615270 |
aacatcaaaccacggagaactgctaatggctatgaaattattttttgccatgttaggatacctagcaaagcttggatttcttaaccaagactcgtagtga |
7615369 |
T |
|
| Q |
201 |
ttcttcaacttctcatccgtgtgtgaagcaattaacttgttcatctcac |
249 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
7615370 |
ttcttcaacttctcatcagtgtgtgaaacaattaacttgttcatctcac |
7615418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 7 - 245
Target Start/End: Complemental strand, 7656330 - 7656092
Alignment:
| Q |
7 |
cttcttctattccagcaaatacatttacaattccatttattttatatccactacgaactgctataggttttccccatccgaaatcattaccataaacatc |
106 |
Q |
| |
|
||||||||||||||||||| || || ||||||||| |||||| ||||||||||||||| | ||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
7656330 |
cttcttctattccagcaaaggcacaaaccattccatttgttttatttccactacgaactgccacaggctttccccatccaaaatcattaccataaacatc |
7656231 |
T |
|
| Q |
107 |
aaaccatggagaactactaatggatatgaaattattattggacatgctagcaaccctaacaaagcttggatttcttaaccaagactcatagtgattcttc |
206 |
Q |
| |
|
|||| ||||||||| ||||||| | ||||| ||| || || |||| ||| ||||| |||| |||||||||| ||||| |||||||| | |||||| |
|
|
| T |
7656230 |
aaactttggagaactgctaatggccaaaaaattcttagtgctcaagctatcaagcctaataaagtttggatttctcaaccatgactcataatcattcttt |
7656131 |
T |
|
| Q |
207 |
aacttctcatccgtgtgtgaagcaattaacttgttcatc |
245 |
Q |
| |
|
|| || |||| || ||| ||||||||||||| |||||| |
|
|
| T |
7656130 |
aatttttcattcgagtgcaaagcaattaacttattcatc |
7656092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 7633443 - 7633556
Alignment:
| Q |
137 |
attattattggacatgctagcaaccctaacaaagcttggatttct---taaccaagactcatagtgattcttcaacttctcatccgtgtgtgaagcaatt |
233 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||| |||||||| ||||||||||||||| |
|
|
| T |
7633443 |
attattattggtcatgctagcaaccctaacaaagcctggatttcttcttaaccaagactcatagtgatttttcagcttctcattagtgtgtgaagcaatt |
7633542 |
T |
|
| Q |
234 |
aacttgttcatctc |
247 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7633543 |
aacttgttcatctc |
7633556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 168 - 249
Target Start/End: Original strand, 7628708 - 7628789
Alignment:
| Q |
168 |
aagcttggatttcttaaccaagactcatagtgattcttcaacttctcatccgtgtgtgaagcaattaacttgttcatctcac |
249 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7628708 |
aagcttggattttttaaccaagactcgtagtgattcttcaacatctcatcagtgtgtgaagcaattaacttgttcatctcac |
7628789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 7628608 - 7628669
Alignment:
| Q |
1 |
tactaccttcttctattccagcaaatacatttacaattccatttattttatatccactacga |
62 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||| || |||||||||||||||||| |
|
|
| T |
7628608 |
tactaccttcttctattccagcaaatacattaacaagtcctttcattttatatccactacga |
7628669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 39097703 - 39097738
Alignment:
| Q |
90 |
tcattaccataaacatcaaaccatggagaactacta |
125 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39097703 |
tcattaccataaacatcaaaccttggagaactacta |
39097738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 39088014 - 39088060
Alignment:
| Q |
78 |
ccccatccgaaatcattaccataaacatcaaaccatggagaactact |
124 |
Q |
| |
|
||||| || ||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
39088014 |
ccccaaccaaaatcattatcataaacatcaaaccttggagaactact |
39088060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 8941935 - 8941738
Alignment:
| Q |
1 |
tactaccttcttctattccagcaaatacatttacaattccatttattttatatccactacgaactgctataggttttccccatccgaaatcattaccata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8941935 |
tactaccttcttctattccagcaaatacatttacaattccatttattttatatccactacga-ctgctataggttttccccatccgaaatcattaccata |
8941837 |
T |
|
| Q |
101 |
aacatcaaaccatggagaactactaatggatatgaaattattattggacatgctagcaaccctaacaaagcttggatttcttaaccaagactcatagtg |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8941836 |
aacatcaaaccatggagaactactaatggataagaaattattattggacatgctagcaaccctaacaaagcttggatttcttaaccaagactcatagtg |
8941738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 8936291 - 8936052
Alignment:
| Q |
1 |
tactaccttcttctattccagcaaatacatttacaattccatttattttatatccactacgaactgctataggttttccccatccgaaatcattaccata |
100 |
Q |
| |
|
||||||||||||||||||| |||||||| | | || ||||||| ||||||||||| |||| |||||| ||| ||||||||||| |||||||||||||| |
|
|
| T |
8936291 |
tactaccttcttctattccggcaaatactgtaataagtccatttgctttatatccaccacgacctgctacaggctttccccatccaaaatcattaccata |
8936192 |
T |
|
| Q |
101 |
aacatcaaaccatggagaactactaatggatatgaaattattattggacatgctagcaaccctaacaaagcttggatttcttaaccaagactcatagtga |
200 |
Q |
| |
|
|||||||||||| |||||||| ||||||| ||||||||| || || | |||| || |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8936191 |
aacatcaaaccacggagaactgctaatggctatgaaattcttttttggcatgtta------ctaa---agcttggatttcttaaccaagactcatagtga |
8936101 |
T |
|
| Q |
201 |
ttcttcaacttctcatccgtgtgtgaagcaattaacttgttcatctcac |
249 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
8936100 |
ttcttcaacttctcatcagtgtgtaaagcaattaacttgttcatctcac |
8936052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 4 - 247
Target Start/End: Complemental strand, 8913785 - 8913546
Alignment:
| Q |
4 |
taccttcttctattccagcaaatacatttacaattccatttattttatatccactacgaactgctataggttttccccatccgaaatcattaccataaac |
103 |
Q |
| |
|
|||||||||||||||| ||||||| | | || |||||||||||||||||||||||||||||| | ||| |||||||||| |||||||||||| |
|
|
| T |
8913785 |
taccttcttctattccgacaaatactgtaataagtccatttattttatatccactacgaactgccacaggctttccccatc-------attaccataaac |
8913693 |
T |
|
| Q |
104 |
atcaaaccatggagaactactaatggatatgaaattattattggacatgct---agcaaccctaacaaagcttggatttcttaaccaagactcatagtga |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| | || |||| | ||||| ||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
8913692 |
atcaaactatggagaactactaatggatatgaaattagtttttaccatgttcttagcaagcctaacaaagcttggatttcttaaccaagactcgtaatga |
8913593 |
T |
|
| Q |
201 |
ttcttcaacttctcatccgtgtgtgaagcaattaacttgttcatctc |
247 |
Q |
| |
|
|||||||||||||| || | ||||||||||||||||||||||||||| |
|
|
| T |
8913592 |
ttcttcaacttctcgtcagcgtgtgaagcaattaacttgttcatctc |
8913546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 8919184 - 8919071
Alignment:
| Q |
137 |
attattattggacatgctagcaaccctaacaaagcttggatttctt---aaccaagactcatagtgattcttcaacttctcatccgtgtgtgaagcaatt |
233 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||| |||||||| ||||||||||||||| |
|
|
| T |
8919184 |
attattattggtcatgctagcaaccctaacaaagtctggatttcttcttaaccaagactcatagtgatttttcagcttctcattagtgtgtgaagcaatt |
8919085 |
T |
|
| Q |
234 |
aacttgttcatctc |
247 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
8919084 |
aatttgttcatctc |
8919071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 8938884 - 8938828
Alignment:
| Q |
193 |
catagtgattcttcaacttctcatccgtgtgtgaagcaattaacttgttcatctcac |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8938884 |
catagtgattcttcaacttctcatccgtgtgtgaagcaattaacttgttcatctcac |
8938828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 112
Target Start/End: Complemental strand, 40147562 - 40147453
Alignment:
| Q |
3 |
ctaccttcttctattccagcaaatacatttacaattccatttattttatatccactacgaactgctataggttttccccatccgaaatcattaccataaa |
102 |
Q |
| |
|
|||||||||||| |||||||||||||| | | |||||| ||||||||| |||||| |||||||| | ||||| ||||||||| |||||||||||||||| |
|
|
| T |
40147562 |
ctaccttcttcttttccagcaaatacagtaatcattccacttattttatttccactgcgaactgccacaggttctccccatccaaaatcattaccataaa |
40147463 |
T |
|
| Q |
103 |
catcaaacca |
112 |
Q |
| |
|
|||||||||| |
|
|
| T |
40147462 |
catcaaacca |
40147453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 8102375 - 8102486
Alignment:
| Q |
1 |
tactaccttcttctattccagcaaatacatttacaattccatttattttatatccactacgaactgctataggttttccccatccgaaatcattaccata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| | | |||| || ||||| |||||| |||||||| | |||||||||||||| |||| ||| ||||| |
|
|
| T |
8102375 |
tactaccttcttctattccagcaaatacagcaaacagtccactttgtttatttccactgcgaactgccactggttttccccatccaaaattattgccata |
8102474 |
T |
|
| Q |
101 |
aacatcaaacca |
112 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8102475 |
aacatcaaacca |
8102486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 6500419 - 6500539
Alignment:
| Q |
1 |
tactaccttcttctattccagcaaatacatttacaattccatttattttatatccactacgaactgctataggttttccccatccgaaatcattaccata |
100 |
Q |
| |
|
||||||||| |||| |||||||||||||| | || || |||| |||||||| | |||| |||| ||| | ||||| |||||||| |||||||||||||| |
|
|
| T |
6500419 |
tactaccttattcttttccagcaaatacactaaccataccatctattttatttacactgcgaaatgccacgggtttcccccatccaaaatcattaccata |
6500518 |
T |
|
| Q |
101 |
aacatcaaaccatggagaact |
121 |
Q |
| |
|
|| ||||||||| || ||||| |
|
|
| T |
6500519 |
aatatcaaaccacggggaact |
6500539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 4452 - 4501
Alignment:
| Q |
71 |
aggttttccccatccgaaatcattaccataaacatcaaaccatggagaac |
120 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||| ||||||| |
|
|
| T |
4452 |
aggttttccccaaccaaaatcattaccataaacatcaaaccaaggagaac |
4501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 15745070 - 15745016
Alignment:
| Q |
71 |
aggttttccccatccgaaatcattaccataaacatcaaaccatggagaactacta |
125 |
Q |
| |
|
|||||||||||| || |||||||| ||||||||||||||||| || ||||||||| |
|
|
| T |
15745070 |
aggttttccccaaccaaaatcattgccataaacatcaaaccagggtgaactacta |
15745016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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