View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5456_low_1 (Length: 792)
Name: NF5456_low_1
Description: NF5456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5456_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 36 - 505
Target Start/End: Complemental strand, 28536849 - 28536380
Alignment:
| Q |
36 |
atgattaatatacaggagtcattctgttttcagcttttattttttcatcaatgacaaatatataggaatttggtttgaatattcatatggaatttcaaag |
135 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28536849 |
atgattaatatacaggagtcattctgttttcagcttttattttttcatcaatgacaaatatacaggaatttggtttgaatattcatatggaatttcaaag |
28536750 |
T |
|
| Q |
136 |
cggccaaccttatatctttcatggtaattactaattatacatagtagagtggatcgagtttcgaaacacgtaatgtttcctggttaattcagtggaaatt |
235 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28536749 |
cggccaaccttatatctttcatggtaattactaattatacatagtagagtggatccagtttcgaaacacgtaatgtttcctggttaattcagtggaaatt |
28536650 |
T |
|
| Q |
236 |
tttatttgacaagcttgaatatgtttcattgtgttgaggagaatgaaagtactatatgacatctacaaactttttgtgtcgttcttccttcttgctttct |
335 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28536649 |
tttatttgacaagcttgaatatgttttattgtgttgaggagaatgaaagtactatatgacatctacaaactttttgtgtcgttcttccttcttgcgttct |
28536550 |
T |
|
| Q |
336 |
tcgcacgctcaacctcagccgtttcatctatcaaccacacattatcatactctcgagtctggtttttggttttgaaatttcagagcattactttatactg |
435 |
Q |
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| T |
28536549 |
tcgcacgctcaacgtcagccgtttcatctatcaaccacacattatcatactctcgagtctggtttttggttttgaaatttcagagcattactttatactg |
28536450 |
T |
|
| Q |
436 |
atgaaatggattcactcatgtgtaatttacacatgagaaggtaaagtgtcatctttcaccattcatgaat |
505 |
Q |
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| T |
28536449 |
atgaaatgaattcactcatgtgtaatttacacatgagaaggtaaagtgtcatctttcaccattcatgaat |
28536380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 505 - 765
Target Start/End: Complemental strand, 28536317 - 28536057
Alignment:
| Q |
505 |
tatcctcgtgttaaattacaattgagagaatgcattcccccacattttgcacctatgtggctgctttaatcttcaaaactacatttatttctttatggta |
604 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28536317 |
tatcctcgtgttaaattacaattgagagaatccattcccccacattttgcacctatgtggctgctttaatcttcaaaactacatttatttctttatggta |
28536218 |
T |
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| Q |
605 |
tgttcggttagtagtctagcatgtatttgcaaggtagctgcctggtctagtacagatgttcaatatatactctctgttaagtcctagacattgtttggat |
704 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28536217 |
tgttcggttagtagtctaacatgtatttgcaaggtagctgcctggtctagtacagctgttcaatatatactctctgttaagtcctagacattgtttggat |
28536118 |
T |
|
| Q |
705 |
agaatcttatttgcctgaccacaattctgttgctgttatagactgcaatgttttaatgtgt |
765 |
Q |
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| T |
28536117 |
agaatcttatttgcctgaccacaattctgttgctgttatagactgcaatgttttaatgtgt |
28536057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 28536901 - 28536833
Alignment:
| Q |
34 |
ccatgattaatatacaggagtcattctgttttcagcttttattttttcatcaatgacaaatatatagga |
102 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||| |
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| T |
28536901 |
ccatgattaatatacaggagtcattctgttttcaccttttattttttcatcaatgattaatatacagga |
28536833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 450 - 484
Target Start/End: Original strand, 54492156 - 54492190
Alignment:
| Q |
450 |
ctcatgtgtaatttacacatgagaaggtaaagtgt |
484 |
Q |
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|||||||||||||| |||||||||||||||||||| |
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| T |
54492156 |
ctcatgtgtaattttcacatgagaaggtaaagtgt |
54492190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 438 - 500
Target Start/End: Original strand, 17429155 - 17429217
Alignment:
| Q |
438 |
gaaatggattcactcatgtgtaatttacacatgagaaggtaaagtgtcatctttcaccattca |
500 |
Q |
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||||||||||| |||||||||||||||| ||||||| |||||||| |||| | |||||||| |
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| T |
17429155 |
gaaatggattctctcatgtgtaatttactcatgagatactaaagtgtgatctcttaccattca |
17429217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 450 - 499
Target Start/End: Original strand, 42971534 - 42971584
Alignment:
| Q |
450 |
ctcatgtgtaatttacacatgaga-aggtaaagtgtcatctttcaccattc |
499 |
Q |
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|||||||||||||| |||||||| |||||||||||||||| ||||||||| |
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| T |
42971534 |
ctcatgtgtaatttttacatgagagaggtaaagtgtcatctctcaccattc |
42971584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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