View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5456_low_10 (Length: 217)
Name: NF5456_low_10
Description: NF5456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5456_low_10 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 4638133 - 4638194
Alignment:
| Q |
112 |
gcaccaactcccagaatcacaaaaccttatgcttgatgaccaagaaacctgcagaagaagat |
173 |
Q |
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| T |
4638133 |
gcaccaactcccagaatcacaaaaccttatgcttgatgaccaagaaacctgcagaagaagat |
4638194 |
T |
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Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 12808403 - 12808346
Alignment:
| Q |
116 |
caactcccagaatcacaaaaccttatgcttgatgaccaagaaacctgcagaagaagat |
173 |
Q |
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| T |
12808403 |
caactccaagaatcacaaacccttatgcttgacaaccaagaaacctgcagaagaagat |
12808346 |
T |
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Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 2634181 - 2634238
Alignment:
| Q |
116 |
caactcccagaatcacaaaaccttatgcttgatgaccaagaaacctgcagaagaagat |
173 |
Q |
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| T |
2634181 |
caactccaagaatcacaaacccttatgcttgacaaccaagaaacctgcagaagaagat |
2634238 |
T |
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Target: scaffold0103 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 5828 - 5773
Alignment:
| Q |
116 |
caactcccagaatcacaaaaccttatgcttgatgaccaagaaacctgcagaagaag |
171 |
Q |
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| T |
5828 |
caactccaagaatcacaaacccttatgcttgacaaccaagaaacctgcagaagaag |
5773 |
T |
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