View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5456_low_3 (Length: 474)
Name: NF5456_low_3
Description: NF5456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5456_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 20 - 462
Target Start/End: Complemental strand, 4211408 - 4210966
Alignment:
| Q |
20 |
acttacctacacaacccttcactacaaagctctcacccgacaacagtaacaacgttttcactcatgaaactcataaacaacacgtggaagttaaggaaac |
119 |
Q |
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| T |
4211408 |
acttacctacacaacccttcactacaaagctctcacccgacaacagtaacaacgttttcactcatgaaactcataaacaacacgtggaagttaaggaaac |
4211309 |
T |
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| Q |
120 |
agaggaggaacatgaggaagatgatgttttgggacatataagagacaacctaggaggaagctacgaagaagagggacatgtttctatagaagaggttttc |
219 |
Q |
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| T |
4211308 |
agaggaggaacatgaggaagatgatgttttgggacatataagagacaacctaggaggaagctacgaagaagagggacatgtttctatagaagaggttttc |
4211209 |
T |
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| Q |
220 |
atgaagttgcaaggccaaggaggtaatttcacaaggacacattcagacactaagccggattccggggaggttccggtgaagctgtcgaggaagatgaaga |
319 |
Q |
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| T |
4211208 |
atgaagttgcaaggccaaggaggtaatttcacaaggacacattcagacactaagccggattccggggaggttccggtgaagctgtcgaggaagatgaaga |
4211109 |
T |
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| Q |
320 |
aatctgctagcagtaaatctgctttttcacattttaaggaagatgacattgtggagaaacgccggccagccaccgtgaaagaggcgaaggttgttccggc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4211108 |
aatctgctagcagtaaatctgctttttcacattttaaggaagatgacattgtggagaaacgccggccagccaccgtgaaagaggcgaaggttgttccggc |
4211009 |
T |
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| Q |
420 |
tgcagtggatgaggatgagttggttgattctaaggctgatgat |
462 |
Q |
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| T |
4211008 |
tgcagtggatgaggatgagttggttgattctaaggctgatgat |
4210966 |
T |
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