View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5456_low_4 (Length: 403)
Name: NF5456_low_4
Description: NF5456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5456_low_4 |
 | |
|
| [»] scaffold0199 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 10 - 384
Target Start/End: Complemental strand, 1669901 - 1669527
Alignment:
| Q |
10 |
gcagagaaacatgctatgatataaaaaagaaatagaatgcaaattcaaatcagaatcttcgaagactcaaaacactacaaaattctagtttttatacaat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1669901 |
gcagagaaacatgctatgatataaaaaagaaatagaatgcaaattcaaatcagaatcttcgaagactcaaaacactacaaaattctagtttttatacaat |
1669802 |
T |
|
| Q |
110 |
ggtacccgtggaaatggatagtttaatgttgttcttgtatcaaaattcaaaagtgacaaaactcaagtttttaacaccctgaaacctcatc--gtgtttg |
207 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1669801 |
ggtactcttggaaatggatagtttaatgttgttcttgtatcaaaattcaaaagtgacaaaactcaagtttttaacaccctgaaacctcatcctgtgtttg |
1669702 |
T |
|
| Q |
208 |
tttaaaacacaagttcctgcattgaaaacagggtgtctgcatattgaatgaagtgagctttgaagttttttcacatggttgaaattataggattggatgc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1669701 |
tttaaaacacaagttcctgcattgaaaacagggtgtttgcatatttaatgaagtgagctttgaagttttttcacatggttgaaattataggattggatgc |
1669602 |
T |
|
| Q |
308 |
attataaaaaggataacttgatataatacatttaagtaatgagactctaaccaactatgatgttgtgctgacatgat |
384 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1669601 |
attataaaaaggataacttgatata--acatttaagtaatgagactctaaccaactatgatgctgtgctgacatgat |
1669527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 87 - 263
Target Start/End: Complemental strand, 1665271 - 1665096
Alignment:
| Q |
87 |
caaaattctagtttttatacaatggtacccgtggaaatggatagtttaatgttgttcttgtatcaaaattcaaaagtgacaaaactcaagtttttaacac |
186 |
Q |
| |
|
||||||||||||| |||| ||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1665271 |
caaaattctagttgttatgcaatggttcccgtggaaatggatagtttaatgtt---cttgtatccaaattcaaaagtgacaaaactcaagtttttaacac |
1665175 |
T |
|
| Q |
187 |
cctgaaacctcatc--gtgtttgtttaaaacacaagttcctgcattgaaaacagggtgtctgcatattgaatgaagtga |
263 |
Q |
| |
|
|||||||||||||| |||||||||| ||||| ||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1665174 |
cctgaaacctcatcttgtgtttgtttgaaacataagctcctgccttgaaaacagggtgtctgcatattgaatgaagtga |
1665096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 270 - 384
Target Start/End: Original strand, 1888501 - 1888615
Alignment:
| Q |
270 |
aagttttttcacatggttgaaattataggattggatgcattataaaaaggataacttgatataatacatttaagtaatgagactctaaccaactatgatg |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1888501 |
aagttttttcacatggttgaaattataggattggatgaattataaaaaggataacttgatataatacatttaagtaatgagactctaaccaactatgatg |
1888600 |
T |
|
| Q |
370 |
ttgtgctgacatgat |
384 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
1888601 |
ttgtgctgacatgat |
1888615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 384
Target Start/End: Complemental strand, 1665044 - 1665001
Alignment:
| Q |
341 |
aagtaatgagactctaaccaactatgatgttgtgctgacatgat |
384 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
1665044 |
aagtaatgagactataaccaactatgatgttgtgccgacatgat |
1665001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 263
Target Start/End: Complemental strand, 7789 - 7537
Alignment:
| Q |
10 |
gcagagaaacatgctatgatataaaaaagaaatagaatgcaaattcaaatcagaatcttcgaagactcaaaacactacaaaattctagtttttatacaat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
7789 |
gcagagaaacatgctatgatataaaaaagaaacagaatgcacattcaaatcagaatctttgaagactcaaaacactacaaaattctagttgttatgcaat |
7690 |
T |
|
| Q |
110 |
ggtacccgtggaaatggatagtttaatgttgttcttgtatcaaaattcaaaagtgacaaaactcaagtttttaacaccctgaaacctcatc--gtgtttg |
207 |
Q |
| |
|
||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7689 |
ggttcccgtggaaatggatagtttaa---tgttcttgtatccaaattcaaaagtgacaaaactcaagtttttaacaccctgaaacctcatcttgtgtttg |
7593 |
T |
|
| Q |
208 |
tttaaaacacaagttcctgcattgaaaacagggtgtctgcatattgaatgaagtga |
263 |
Q |
| |
|
||| ||||| ||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7592 |
tttgaaacataagctcctgccttgaaaacagggtgtctgcatattgaatgaagtga |
7537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 384
Target Start/End: Complemental strand, 7485 - 7442
Alignment:
| Q |
341 |
aagtaatgagactctaaccaactatgatgttgtgctgacatgat |
384 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
7485 |
aagtaatgagactataaccaactatgatgttgtgccgacatgat |
7442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 10 - 263
Target Start/End: Original strand, 5997413 - 5997645
Alignment:
| Q |
10 |
gcagagaaacatgctatgatataaaaaagaaatagaatgcaaattcaaatcagaatcttcgaagactcaaaacactacaaaattctagtttttatacaat |
109 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||| |||||||| |||||||| ||||||||| ||||||||||||||||||||||||| || || | |
|
|
| T |
5997413 |
gcagagaaacgtgctaggatataaaaaagaaacagaatgcacattcaaataagaatcttctaagactcaaaacactacaaaattctgattgtt-----ct |
5997507 |
T |
|
| Q |
110 |
ggtacccgtggaaatggatagtttaatgttgttcttgtatcaaaattcaaaagtgacaaaactcaagtttttaacaccctgaaacctcatc--gtgtttg |
207 |
Q |
| |
|
|| ||||||| |||||||||||||||||| ||||||||||||||||||||| |||| | |||||||||||||||| ||||||| |
|
|
| T |
5997508 |
gg-----------atggataatttaatgttgttcttgta-------tcaaaagtgacaaaactcaagcttttgataccctgaaacctcatcttgtgtttg |
5997589 |
T |
|
| Q |
208 |
tttaaaacacaagttcctgcattgaaaacagggtgtctgcatattgaatgaagtga |
263 |
Q |
| |
|
||||| ||| |||||||||| ||||||||| ||||| |||| |||||| ||||||| |
|
|
| T |
5997590 |
tttaacacataagttcctgccttgaaaacatggtgtgtgcacattgaacgaagtga |
5997645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 261 - 386
Target Start/End: Original strand, 5997669 - 5997792
Alignment:
| Q |
261 |
tgagctttgaagttttttcacatggttgaaattatagg-attggatgcattataaaaaggataacttgatataatacatttaagtaatgagactctaacc |
359 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||| ||||||||| | |||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
5997669 |
tgagctttgaagttttttcacttggttgaaattacagggattggatgc-tcataaaaaggataacaggatataatacat--aagtaatgagactctaacc |
5997765 |
T |
|
| Q |
360 |
aactatgatgttgtgctgacatgatcc |
386 |
Q |
| |
|
|||||||||||| |||||||||||||| |
|
|
| T |
5997766 |
aactatgatgttatgctgacatgatcc |
5997792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University