View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5456_low_5 (Length: 319)
Name: NF5456_low_5
Description: NF5456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5456_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 2766256 - 2765968
Alignment:
| Q |
18 |
caaagcaggactcaacctaaacatgagggtgcaaaactccatctcattaagagctccatccccatcaatatcaccttctcttagcatgcaagtaatttca |
117 |
Q |
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| T |
2766256 |
caaagcaggactcaacctaaacatgagggtgcaaaactccatctcattaagagctccatccccatcaatatcaccttctcttagcatgcaagtaatttca |
2766157 |
T |
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| Q |
118 |
tcgtcgttcataccttccaatccaagcaatgcagagtttttctttaagctctcaaatgttatcactttcttctccctgtccatcaacacattaaaaccat |
217 |
Q |
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| T |
2766156 |
tcgtcgttcataccttccaatccaagcaatgcagagtttttctttaagctctcaaatgttatcactttcttctccctgtccatcaacacattaaaaccat |
2766057 |
T |
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| Q |
218 |
ttgccaactccttcataaacccttcacttcctaatttctccatcattgaagggaagtagtcctcaaaaacaaccgatccaccattcttc |
306 |
Q |
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| T |
2766056 |
ttgccaactccttcataaacccttcacttcctaatttctccatcattgaagggaagtagtcctcaaaaacaaccgatccaccattcttc |
2765968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 34144024 - 34144104
Alignment:
| Q |
25 |
ggactcaacctaaacatgagggtgcaaaactccatctcattaagagctccatccccatcaatatcaccttctcttagcatg |
105 |
Q |
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| T |
34144024 |
ggactcaacctaaacatgagaatgcaaaactccatttgatttaaagcaccatctccatccaaatcaccttccattagcatg |
34144104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 34114930 - 34115010
Alignment:
| Q |
25 |
ggactcaacctaaacatgagggtgcaaaactccatctcattaagagctccatccccatcaatatcaccttctcttagcatg |
105 |
Q |
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| T |
34114930 |
ggactcaacctaaacatgagaatgcaaaactccatttgatttaaagcaccatctccatccaaatcaccctccattagcatg |
34115010 |
T |
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