View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5456_low_6 (Length: 265)
Name: NF5456_low_6
Description: NF5456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5456_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 21 - 249
Target Start/End: Original strand, 12219554 - 12219782
Alignment:
| Q |
21 |
agactaaaattaagagaataattttgatataaggtcaatgtaaaacttttcagattgcaattcagttatatataaactatcaatttgtatgactatatga |
120 |
Q |
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| T |
12219554 |
agactaaaattaagagaataattttgatataaggtcaatgtaaaacttttcagattgcaattcagttatatataaactatcaatttgtatgactatatga |
12219653 |
T |
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| Q |
121 |
tgaaaagtgtatgtattttaaagatcaaatggttatatgattgagtgactataaatacaaatgaatgaaataaaattgtgtattatatttactgcaccaa |
220 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12219654 |
tgaaaagtacatgtatttcaaagatcaaatggttatatgattgagtgactataaatacaaatgaatgaaatataattgtgtattatatttactgcaccaa |
12219753 |
T |
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| Q |
221 |
acatagagtaatgtaactctataaaaatt |
249 |
Q |
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| T |
12219754 |
acatagagtaatgtaactctataaaaatt |
12219782 |
T |
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