View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5456_low_8 (Length: 247)

Name: NF5456_low_8
Description: NF5456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5456_low_8
NF5456_low_8
[»] chr4 (2 HSPs)
chr4 (18-95)||(7605684-7605761)
chr4 (181-243)||(7605847-7605910)
[»] chr7 (1 HSPs)
chr7 (18-79)||(8942298-8942359)


Alignment Details
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 7605684 - 7605761
Alignment:
Q  18 agatggaaccccacaagagagtgtgatagatacaacagatcggaagcaagatttgaaggaggaggcagcaacgttgaa 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7605684 agatggaaccccacaagagagtgtgatagatacaacagatcggaagcaagatttgaaggaggaggcagcaacgttgaa 7605761  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 7605847 - 7605910
Alignment:
Q  181 aacttgtgtaactggtcagcaggtaagtaactt-nnnnnnngtgaatgagatggcaagtttcca 243  Q
    |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||    
T  7605847 aacttgtgtaactggtcagcaggtaagtaacttaaaaaaaagtgaatgagatggcaagtttcca 7605910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 8942359 - 8942298
Alignment:
Q  18 agatggaaccccacaagagagtgtgatagatacaacagatcggaagcaagatttgaaggagg 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8942359 agatggaaccccacaagagagtgtgatagatacaacagatcggaagcaagatttgaaggagg 8942298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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