View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5457-Insertion-2 (Length: 810)

Name: NF5457-Insertion-2
Description: NF5457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5457-Insertion-2
NF5457-Insertion-2
[»] chr5 (2 HSPs)
chr5 (8-695)||(13674346-13675034)
chr5 (718-810)||(13675029-13675120)
[»] chr2 (4 HSPs)
chr2 (641-731)||(41755235-41755327)
chr2 (364-436)||(22436969-22437041)
chr2 (339-433)||(32475441-32475535)
chr2 (364-414)||(18690397-18690447)
[»] chr1 (4 HSPs)
chr1 (342-459)||(43074962-43075081)
chr1 (339-395)||(38571059-38571115)
chr1 (507-574)||(11237450-11237517)
chr1 (337-423)||(11237278-11237364)
[»] chr7 (1 HSPs)
chr7 (339-452)||(18043926-18044039)
[»] chr8 (4 HSPs)
chr8 (339-423)||(21217773-21217857)
chr8 (622-731)||(21218060-21218171)
chr8 (365-445)||(28285593-28285673)
chr8 (662-731)||(27842652-27842719)
[»] chr6 (1 HSPs)
chr6 (337-420)||(14942693-14942776)
[»] chr4 (3 HSPs)
chr4 (676-730)||(588700-588754)
chr4 (484-732)||(18905517-18905765)
chr4 (615-730)||(27059421-27059538)


Alignment Details
Target: chr5 (Bit Score: 549; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 8 - 695
Target Start/End: Original strand, 13674346 - 13675034
Alignment:
Q  8 atcgcaggcctgtgtttttgttcaagctaagtaggcttgtaatctagcatgaacctgtagggtgcatcaacaatgtaatggatagaaatgatcccagcag 107  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13674346 atcgcaggcttgtgtttttgttcaagctaagtaggcttgtaatctagcatgaacctgtagggtgcatcaacaatgtaatggatagaaatgatcccagcag 13674445  T
Q  108 agtgnnnnnnnnnnatctttttgactctgcaatgccattgtttcaatcccattttcatcagttttaattaattgcaaggttcttgtttccatacataatt 207  Q
    ||||          ||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||    
T  13674446 agtgttttttttt-atctttttgactctgcaatgccattgtttcaatcccaatttcatcagtttcaatcaattgcaaggttcttgtttccatacataatt 13674544  T
Q  208 gatagttaactacctttgtccgtacttatgttgttggggatcttgttgtcttgcatggatattgagttttagtggtctttctccatgcaatccctgattt 307  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13674545 gatagttaactacctttgtccgtacatatgttgttggggatcttgttgtcttgcatggatattgagttttagtggtctttctccatgcaatccctgattt 13674644  T
Q  308 cttcatag---ctggacgaaattgaactcttccaaatatcttcgaaagatcttatcaaagaagcgtccaactagatcggttctttagaactatactggtc 404  Q
    ||||||||   |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||| | |||||||||||||||||||||    
T  13674645 cttcatagctcctggacgaaattgaactcttccaaatattttcgaaagatcttaccaaagaagcgtccaactggattgattctttagaactatactggtc 13674744  T
Q  405 aaatattgagaacatggttttcacgtcgttgttcatgagctacatttgtgtgaaccagatgcatccatttgagttggacgatggatgatgatactcaaac 504  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||    
T  13674745 aaatattgagaacatggttttcacgtcgttgctcatgagctacatttgtgtgaaccaaatgcatccatttgagttgaacgatggatgatgatactc-aac 13674843  T
Q  505 aatgtccactctccttgtatctttgtggttaagtcaacaattgatttagtccagttgattcttcaacccagacagtgagatatcaacttgaaaccctgga 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13674844 aatgtccactctccttgtatctttgtggttaagtcaacaattgatttagtccagttgattcttcaacccagacagtgagatatcaacttgaaa-cctgga 13674942  T
Q  605 catattgatctttctcccgttgtagtgaattgcgtctaacttggta--caaatctactggataaatgttcaaggttctttgttgtattttata 695  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||| ||||||||||    
T  13674943 catattgat-tttctcccgttgtagtgaattgcgtctaacttggtattcaaatctactagataaatgttcaaggttctttgtcgtattttata 13675034  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 718 - 810
Target Start/End: Original strand, 13675029 - 13675120
Alignment:
Q  718 tttatagaagtttacatgcattgtggaactgtagaact-gtcggtgcaacctggaaccacataaaaatatccatgtaaaggtagttaaccaccg 810  Q
    |||||||||||||||||||||||| || |||||||| | |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13675029 tttatagaagtttacatgcattgtaga-ctgtagaaattgtcgctgcaacctg-aaccacataaaaatatccatgtaaaggtagttaaccaccg 13675120  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 641 - 731
Target Start/End: Complemental strand, 41755327 - 41755235
Alignment:
Q  641 taacttggta--caaatctactggataaatgttcaaggttctttgttgtattttataacaaattaaccaaacgtatcaatttatagaagttta 731  Q
    ||||||||||  ||||| |||| ||||| |||||| ||||||||||||| ||||||||||||| || |||||   ||||||||||||||||||    
T  41755327 taacttggtattcaaatttacttgataagtgttcatggttctttgttgtcttttataacaaatgaaacaaacacgtcaatttatagaagttta 41755235  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 364 - 436
Target Start/End: Original strand, 22436969 - 22437041
Alignment:
Q  364 gaagcgtccaactagatcggttctttagaactatactggtcaaatattgagaacatggttttcacgtcgttgt 436  Q
    |||||||||||||| |||||| ||||||||| ||||||    |||||||||||||||||| ||||||||||||    
T  22436969 gaagcgtccaactatatcggtcctttagaacaatactgactgaatattgagaacatggttctcacgtcgttgt 22437041  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 339 - 433
Target Start/End: Original strand, 32475441 - 32475535
Alignment:
Q  339 aatatcttcgaaagatcttatcaaagaagcgtccaactagatcggttctttagaactatactggtcaaatattgagaacatggttttcacgtcgt 433  Q
    |||||||| ||||||||| |||||| |||||||||||| ||||||| |||||| | | ||||    |||||| || ||||||||| |||||||||    
T  32475441 aatatctttgaaagatctaatcaaataagcgtccaactcgatcggtcctttagtaatgtactaacaaaatatcgataacatggttctcacgtcgt 32475535  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 364 - 414
Target Start/End: Original strand, 18690397 - 18690447
Alignment:
Q  364 gaagcgtccaactagatcggttctttagaactatactggtcaaatattgag 414  Q
    ||||||||||||| |||  || ||||||||||||||||| |||||||||||    
T  18690397 gaagcgtccaacttgattagtcctttagaactatactggccaaatattgag 18690447  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 342 - 459
Target Start/End: Original strand, 43074962 - 43075081
Alignment:
Q  342 atcttcgaaagatcttatcaaagaagcgtccaactagatcggttctttagaactatactggtcaaatattgagaacatggttttcacgtc--gttgttca 439  Q
    ||||||||||||||  | ||| ||||||||||||| ||| |||  ||| |||||||||||   |||||| |||||||||||| |||||||  ||||||||    
T  43074962 atcttcgaaagatccaaccaaggaagcgtccaactcgattggtcatttcgaactatactgactaaatatcgagaacatggttctcacgtcgtgttgttca 43075061  T
Q  440 tgagctacatttgtgtgaac 459  Q
    |||||| ||| || ||||||    
T  43075062 tgagcttcatatgggtgaac 43075081  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 339 - 395
Target Start/End: Complemental strand, 38571115 - 38571059
Alignment:
Q  339 aatatcttcgaaagatcttatcaaagaagcgtccaactagatcggttctttagaact 395  Q
    |||||||| ||||||||  | ||| ||||||||||||| ||||||||||||||||||    
T  38571115 aatatctttgaaagatccgaccaaggaagcgtccaacttgatcggttctttagaact 38571059  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 507 - 574
Target Start/End: Original strand, 11237450 - 11237517
Alignment:
Q  507 tgtccactctccttgtatctttgtggttaagtcaacaattgatttagtccagttgattcttcaaccca 574  Q
    ||||||| |||||||| ||||||||||| |||| |||||||||||  ||||  |||| ||||||||||    
T  11237450 tgtccaccctccttgtgtctttgtggttgagtcgacaattgatttgatccaactgatccttcaaccca 11237517  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 337 - 423
Target Start/End: Original strand, 11237278 - 11237364
Alignment:
Q  337 caaatatcttcgaaagatcttatcaaagaagcgtccaactagatcggttctttagaactatactggtcaaatattgagaacatggtt 423  Q
    |||||||||||||||||||||| ||| |||   || |||| ||| ||| |||||| | | |||||  ||||||||||||||||||||    
T  11237278 caaatatcttcgaaagatcttaccaacgaaatctctaactcgattggtcctttagtattgtactgaccaaatattgagaacatggtt 11237364  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 339 - 452
Target Start/End: Original strand, 18043926 - 18044039
Alignment:
Q  339 aatatcttcgaaagatcttatcaaagaagcgtccaactagatcggttctttagaactatactggtcaaatattgagaacatggttttcacgtcgttgttc 438  Q
    ||||||||||||||| || | |||||||| || |||||  |||||| |||||| | | |||||   |||||| ||||| |||||||||||||||| ||||    
T  18043926 aatatcttcgaaagacctgaccaaagaagagttcaactcaatcggtcctttagtattgtactgacaaaatatcgagaatatggttttcacgtcgtcgttc 18044025  T
Q  439 atgagctacatttg 452  Q
     |||||| ||||||    
T  18044026 ctgagcttcatttg 18044039  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 339 - 423
Target Start/End: Original strand, 21217773 - 21217857
Alignment:
Q  339 aatatcttcgaaagatcttatcaaagaagcgtccaactagatcggttctttagaactatactggtcaaatattgagaacatggtt 423  Q
    |||||||| ||||||| | | ||| ||||||||||||| ||||| || |||||||||||||||  |||||||  |||||||||||    
T  21217773 aatatctttgaaagatatgaccaatgaagcgtccaactcgatcgattatttagaactatactgaccaaatatcaagaacatggtt 21217857  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 622 - 731
Target Start/End: Original strand, 21218060 - 21218171
Alignment:
Q  622 cgttgtagtgaattgcgtctaacttggtac--aaatctactggataaatgttcaaggttctttgttgtattttataacaaattaaccaaacgtatcaatt 719  Q
    ||||||||| ||||||| |||||||||||   | |||||||||||||||||||| | || ||| || | ||||||| | ||| ||||||||  | ||||     
T  21218060 cgttgtagtaaattgcggctaacttggtatttagatctactggataaatgttcatgtttttttttttttttttatagcgaatgaaccaaacacaccaata 21218159  T
Q  720 tatagaagttta 731  Q
    ||||||||||||    
T  21218160 tatagaagttta 21218171  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 365 - 445
Target Start/End: Original strand, 28285593 - 28285673
Alignment:
Q  365 aagcgtccaactagatcggttctttagaactatactggtcaaatattgagaacatggttttcacgtcgttgttcatgagct 445  Q
    |||||||||||| ||||||  || ||  |||||||||  |||| |||||||| |||||| ||||||||| |||||||||||    
T  28285593 aagcgtccaactcgatcggccctctattactatactgaccaaagattgagaatatggttctcacgtcgtcgttcatgagct 28285673  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 662 - 731
Target Start/End: Complemental strand, 27842719 - 27842652
Alignment:
Q  662 gataaatgttcaaggttctttgttgtattttataacaaattaaccaaacgtatcaatttatagaagttta 731  Q
    ||||| |||||| ||||||||||||| ||||| ||||||| || |||||  ||||||||||| |||||||    
T  27842719 gataagtgttcatggttctttgttgtgttttacaacaaatgaatcaaac--atcaatttatacaagttta 27842652  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 337 - 420
Target Start/End: Complemental strand, 14942776 - 14942693
Alignment:
Q  337 caaatatcttcgaaagatcttatcaaagaagcgtccaactagatcggttctttagaactatactggtcaaatattgagaacatg 420  Q
    ||||||||||| |||||||| | ||| ||||||||||||| ||||  |  ||||||||||||||||| |||||  |||||||||    
T  14942776 caaatatcttcaaaagatctgaccaaggaagcgtccaactcgatcaatcatttagaactatactggtaaaataaggagaacatg 14942693  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 676 - 730
Target Start/End: Original strand, 588700 - 588754
Alignment:
Q  676 gttctttgttgtattttataacaaattaaccaaacgtatcaatttatagaagttt 730  Q
    |||||||||||| |||||||| |||| |||||||| | |||||||||||||||||    
T  588700 gttctttgttgtgttttataataaatgaaccaaacatttcaatttatagaagttt 588754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 484 - 732
Target Start/End: Original strand, 18905517 - 18905765
Alignment:
Q  484 gatggatgatgatactcaaacaatgtccactctccttgtatctttgtggttaagtcaacaattgatttagtccagttgattcttcaacccagacagtgag 583  Q
    |||||| |||||||||||| ||||||||||  ||||||| ||||||||||| |||  ||  || |||| ||| || | || |||||||||||||  || |    
T  18905517 gatggacgatgatactcaa-caatgtccaccatccttgtgtctttgtggttgagttgacggtt-atttggtctagcttatccttcaacccagactatgtg 18905614  T
Q  584 atatcaacttgaaaccctggacatattgatctttctcccgttgtagtgaattgcgtctaacttggta--caaatctactggataaatgttcaaggttctt 681  Q
    | |||||| | | |||||  ||| ||||   |||||| ||||||||| || |||| ||||||||||   |  |||||||||||||||||||| ||||| |    
T  18905615 acatcaacct-agaccctaaacaaattgggttttctctcgttgtagtaaactgcggctaacttggtgttctgatctactggataaatgttcatggttcat 18905713  T
Q  682 tgttgtattttataac-aaattaaccaaacgtatcaatttatagaagtttac 732  Q
     ||||| |||||  || |||| ||||||||   ||||||||| |||||||||    
T  18905714 agttgtgttttaacacaaaatgaaccaaacacttcaatttattgaagtttac 18905765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 615 - 730
Target Start/End: Complemental strand, 27059538 - 27059421
Alignment:
Q  615 tttctcccgttgtagtgaattgcgtctaacttg--gtacaaatctactggataaatgttcaaggttctttgttgtattttataacaaattaaccaaacgt 712  Q
    |||| ||||||||||| ||||| | |||| |||  || || ||| || |||||| |||||| |||| |||||||| ||||| | ||||| ||||||||      
T  27059538 tttcccccgttgtagtaaattgtggctaatttgatgttcagatccaccggataagtgttcacggttttttgttgtgttttacagcaaatgaaccaaacac 27059439  T
Q  713 atcaatttatagaagttt 730  Q
    | ||||||||||||||||    
T  27059438 accaatttatagaagttt 27059421  T

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