View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5457-Insertion-4 (Length: 561)
Name: NF5457-Insertion-4
Description: NF5457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5457-Insertion-4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 8 - 561
Target Start/End: Original strand, 33521350 - 33521903
Alignment:
| Q |
8 |
acctcaactgctccagctgctataagtatcctcagcgcccgctgaagtccgtgcttcatgttctctttgtcgaattcttcatctaactcatagtttatcc |
107 |
Q |
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| T |
33521350 |
acctcaactgctccagctgctataagtatcctcagcgcccgctgaagtccgtgcttcatgttctctttgtcgaattcttcatctaactcatagtttatcc |
33521449 |
T |
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| Q |
108 |
taccctcgctcttcacctctccacagcctttgtcctgaataattgtgatgaaatgaacagtcctcgaatatcttagcattctttcattgaagtcaaatcc |
207 |
Q |
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| T |
33521450 |
taccctcgctcttcacctctccacagcctttgtcctgaataattgtgatgaaatgaacagtcctcgaatatcttagcattctttctttgaagtcgaatcc |
33521549 |
T |
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| Q |
208 |
ggattcccaaggaatcacggtagaaaatgctcctggtcctagtgaaggagtttcaattatagattttacttttgagtcttcatctgatagcactttgtgt |
307 |
Q |
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||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||| | ||||||| ||||| ||||||||||||||||||||| |
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| T |
33521550 |
ggattcccaaggaatcatggtagaaaatgcgcctggtcctagtgatggagtttcaattatagctcttactttagagtcatcatctgatagcactttgtgt |
33521649 |
T |
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| Q |
308 |
acagaagttattattcctccctcatagctttta-ccttgagatcagacattgtgtctggaaaatgtccccacgtcattagcacgggatgaagatgaaagt |
406 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
33521650 |
acagaagttattattcctccctcatagcttttacccttgagatcagacattgtgtctggaaaatgtccccacgtcattagcaccggatgaagatgaaggt |
33521749 |
T |
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| Q |
407 |
gtcagccgatattcttattctttaatccactagagatcattaaaggtggcgtggaaagtgctccacatgatgagattgttgctttggcctcaacatgaat |
506 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33521750 |
gtcggccgatattcttattctttaatccactagagatcattaaaggtggcgtggaaagtgctccacatgatgagattgttgctttggcctcaacttgaat |
33521849 |
T |
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| Q |
507 |
tttccatgtgatgttttctgttaaaacatttgcccataactcctaaacatttctt |
561 |
Q |
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| T |
33521850 |
tttctatgtgatgttttctgttaaaacatttg-ccataactcctaaacatttctt |
33521903 |
T |
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