View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5457-Insertion-5 (Length: 406)

Name: NF5457-Insertion-5
Description: NF5457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5457-Insertion-5
NF5457-Insertion-5
[»] chr1 (2 HSPs)
chr1 (83-311)||(14751538-14751769)
chr1 (352-405)||(14751439-14751492)
[»] chr7 (4 HSPs)
chr7 (242-298)||(5464471-5464527)
chr7 (227-298)||(5949480-5949551)
chr7 (229-298)||(13278671-13278740)
chr7 (231-303)||(25828304-25828376)
[»] chr8 (2 HSPs)
chr8 (240-298)||(12608096-12608154)
chr8 (229-311)||(15243626-15243708)
[»] chr5 (1 HSPs)
chr5 (240-298)||(38697379-38697437)
[»] chr2 (4 HSPs)
chr2 (240-298)||(45036002-45036060)
chr2 (234-308)||(6570934-6571004)
chr2 (240-309)||(22540215-22540284)
chr2 (229-309)||(4653828-4653908)
[»] chr6 (1 HSPs)
chr6 (242-298)||(17915105-17915161)
[»] chr3 (1 HSPs)
chr3 (234-309)||(50426123-50426198)
[»] chr4 (1 HSPs)
chr4 (235-311)||(23397479-23397554)


Alignment Details
Target: chr1 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 83 - 311
Target Start/End: Complemental strand, 14751769 - 14751538
Alignment:
Q  83 cctgcaaactgaagatcatacataacgatatttcttctcattcacagtgcctaaccaccggtaggtctccgttcactcagccgacaaattgtcttaattt 182  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14751769 cctgcaaactgaagatcatacataacaatatttcttctcattcacagtgcctaaccaccggtaggtctccgttcactcagccgacaaattgtcttaattt 14751670  T
Q  183 taaatagaaaaattagcataacaataa---tagtcataataacaaacta--ctctactcacaggaactgccctccgtctggcatagaatttctcatcctg 277  Q
    |||||||  ||||||||||||||||||   |||||||||||||||||||  |||||||||| |||||||||||||||||| |||||||| ||||||||||    
T  14751669 taaatag--aaattagcataacaataatagtagtcataataacaaactactctctactcaccggaactgccctccgtctgacatagaatctctcatcctg 14751572  T
Q  278 agagataattttggaacttaagttctactctctc 311  Q
    ||||||||  ||||||||||| || |||||||||    
T  14751571 agagataaccttggaacttaatttatactctctc 14751538  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 405
Target Start/End: Complemental strand, 14751492 - 14751439
Alignment:
Q  352 aaaaactactccttcaatccaacattaatcaatatatttaatcattttgcccaa 405  Q
    ||||||||||| ||| |||||||||||||||||||||||||| |||||||||||    
T  14751492 aaaaactactcattcgatccaacattaatcaatatatttaataattttgcccaa 14751439  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 5464527 - 5464471
Alignment:
Q  242 aactgccctccgtctggcatagaatttctcatcctgagagataattttggaacttaa 298  Q
    |||||||||||||||| |||||||| ||||||||||||||||||  ||| |||||||    
T  5464527 aactgccctccgtctgacatagaatctctcatcctgagagataagcttgaaacttaa 5464471  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 298
Target Start/End: Complemental strand, 5949551 - 5949480
Alignment:
Q  227 tactctactcacaggaactgccctccgtctggcatagaatttctcatcctgagagataattttggaacttaa 298  Q
    |||||||||||| |||| ||||||||| | ||||| |||| |||||| |||||||||||  |||||||||||    
T  5949551 tactctactcactggaattgccctccgcccggcatggaatctctcattctgagagataagcttggaacttaa 5949480  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 298
Target Start/End: Original strand, 13278671 - 13278740
Alignment:
Q  229 ctctactcacaggaactgccctccgtctggcatagaatttctcatcctgagagataattttggaacttaa 298  Q
    |||| ||||| ||||| |||||||| ||| ||| |||| ||||||||||||||||||  |||||||||||    
T  13278671 ctctgctcactggaaccgccctccgcctgtcatggaatctctcatcctgagagataaccttggaacttaa 13278740  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 303
Target Start/End: Complemental strand, 25828376 - 25828304
Alignment:
Q  231 ctactcacaggaactgccctccgtctggcatagaatttctcatcctgagagataattttggaacttaagttct 303  Q
    |||||||| ||||||| | || | || |||| |||| ||||||||||||||||||  ||||||||||||||||    
T  25828376 ctactcaccggaactgtcttctgcctagcatggaatctctcatcctgagagataagcttggaacttaagttct 25828304  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 298
Target Start/End: Original strand, 12608096 - 12608154
Alignment:
Q  240 ggaactgccctccgtctggcatagaatttctcatcctgagagataattttggaacttaa 298  Q
    |||||||||||||||||| ||  |||| ||||||||||||||||||  |||||||||||    
T  12608096 ggaactgccctccgtctgacacggaatctctcatcctgagagataagcttggaacttaa 12608154  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 311
Target Start/End: Original strand, 15243626 - 15243708
Alignment:
Q  229 ctctactcacaggaactgccctccgtctggcatagaatttctcatcctgagagataattttggaacttaagttctactctctc 311  Q
    |||| ||||| ||||||||||||||  |||||| |||| ||||||||| |||||||   ||||||||||| ||| ||||||||    
T  15243626 ctctgctcactggaactgccctccgcttggcatggaatctctcatcctaagagatatgcttggaacttaatttcgactctctc 15243708  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 298
Target Start/End: Complemental strand, 38697437 - 38697379
Alignment:
Q  240 ggaactgccctccgtctggcatagaatttctcatcctgagagataattttggaacttaa 298  Q
    |||||||||||| ||||||||| |||| ||||||||||||||||||  ||| |||||||    
T  38697437 ggaactgccctctgtctggcatggaatctctcatcctgagagataaacttgaaacttaa 38697379  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 298
Target Start/End: Complemental strand, 45036060 - 45036002
Alignment:
Q  240 ggaactgccctccgtctggcatagaatttctcatcctgagagataattttggaacttaa 298  Q
    ||||||| ||||||||| |||| |||| | |||||||||||||||| ||||||||||||    
T  45036060 ggaactgacctccgtctagcattgaatctttcatcctgagagataagtttggaacttaa 45036002  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 308
Target Start/End: Complemental strand, 6571004 - 6570934
Alignment:
Q  234 ctcacaggaactgccctccgtctggcatagaatttctcatcctgagagataattttggaacttaagttctactct 308  Q
    ||||| ||||||||||||||    |||| |||| ||||||||||||||||||  ||||||||||| ||| |||||    
T  6571004 ctcactggaactgccctccg----gcatggaatctctcatcctgagagataagcttggaacttaatttcgactct 6570934  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 309
Target Start/End: Original strand, 22540215 - 22540284
Alignment:
Q  240 ggaactgccctccgtctggcatagaatttctcatcctgagagataattttggaacttaagttctactctc 309  Q
    |||| ||||||||| |||  || |||| ||||||||||||||||||  ||||||||||| |||| |||||    
T  22540215 ggaattgccctccgcctgatatggaatctctcatcctgagagataaacttggaacttaatttcttctctc 22540284  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 309
Target Start/End: Original strand, 4653828 - 4653908
Alignment:
Q  229 ctctactcacaggaactgccctccgtctggcatagaatttctcatcctgagagataattttggaacttaagttctactctc 309  Q
    |||| ||||| |||| || |||||||||| |||  ||| ||||||  |||||||||| |||||||||||| ||| ||||||    
T  4653828 ctctgctcactggaagtgtcctccgtctgacatgaaatctctcattttgagagataagtttggaacttaatttcgactctc 4653908  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 17915105 - 17915161
Alignment:
Q  242 aactgccctccgtctggcatagaatttctcatcctgagagataattttggaacttaa 298  Q
    |||||||||||| ||||||| |||| ||||||| ||||||||||  |||||||||||    
T  17915105 aactgccctccgcctggcatggaatctctcatcttgagagataagcttggaacttaa 17915161  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 234 - 309
Target Start/End: Original strand, 50426123 - 50426198
Alignment:
Q  234 ctcacaggaactgccctccgtctggcatagaatttctcatcctgagagataattttggaacttaagttctactctc 309  Q
    ||||| ||||||||| |||||||| ||| |||| ||||| | ||||| |||| |||||||||||| ||| ||||||    
T  50426123 ctcactggaactgccatccgtctgacattgaatctctcaccttgagaaataagtttggaacttaatttcaactctc 50426198  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 311
Target Start/End: Complemental strand, 23397554 - 23397479
Alignment:
Q  235 tcacaggaactgccctccgtctggcatagaatttctcatcctgagagataattttggaacttaagttctactctctc 311  Q
    |||| |||| || |||||||||||||| |||| ||||||||| | |||||| |||||||||||| ||| ||| ||||    
T  23397554 tcactggaattgtcctccgtctggcatggaatctctcatcct-aaagataagtttggaacttaatttcgactatctc 23397479  T

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