View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5457_low_1 (Length: 453)
Name: NF5457_low_1
Description: NF5457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5457_low_1 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 12 - 453
Target Start/End: Original strand, 13673731 - 13674172
Alignment:
| Q |
12 |
atgaacatgatctactattgtcaggccaagccacttcttgactcaaaaaatgtccaagagctagcagatcctagattagaagagaaatatgatcccaccg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13673731 |
atgaacatgatctactattgtcaggccaagccacttcttgactcaaaaaatgtccaagagctagcagatcctagattagaagagaaatatgatcccaccg |
13673830 |
T |
|
| Q |
112 |
aaatgaaccgtgccatgaagacagcttccttgtgcgtccaccattcatcctccaagcggccattcatgaaacaagtaagaaaataagcatccttttctat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13673831 |
aaatgaaccgtgccatgaagacagcttccttgtgcgtccaccattcatcctccaagcggccattcatgaaacaagtaagaaaataagcatccttttctat |
13673930 |
T |
|
| Q |
212 |
gaagcgctgacacatacattggacacaatacttacactaataataatttacgtaagcaaaggtgattaaatgtaaacacatgtgtttgtgtctggaacgt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13673931 |
gaagcgctgacacatacattggacacaatacttacactaataataatttaagtaagcaaaggtgattacatgtaaacacatgtgtttgtgtctggaacgt |
13674030 |
T |
|
| Q |
312 |
gatttgtttctttctgtactaaaggttgcgcaactactgaagggcgaggaagcaattatagattccaaacatcattcaggtgcttcaagatcactctcgt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13674031 |
gatttgtttctttctgtactaaaggttgcgcaactactgaagggcgaggaagcaattatagattccaaacatcattcaggtgcttcaagatcactctcgt |
13674130 |
T |
|
| Q |
412 |
tagaagcatgtgacttagaagattatacttgctctagttact |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13674131 |
tagaagcatgtgacttagaagattatacttgctctagttact |
13674172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University