View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5457_low_5 (Length: 205)
Name: NF5457_low_5
Description: NF5457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5457_low_5 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 1239519 - 1239719
Alignment:
| Q |
1 |
tatatattaattcatgctctctgcgcgaggactgatttcattttccatgataatcaatttgtagtagtattgcgatttatgaagcacaaaaactcttcgg |
100 |
Q |
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| T |
1239519 |
tatatattaattcatgctctctgcgcgaggactgatttcattttccatgataatcaacttgtagtagtattgcaatctatgaagcacagaaactcttcag |
1239618 |
T |
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| Q |
101 |
attacacatgtctcagtatgagacaaggagcgtgtcggacaccgacacgacacatataattacacatgattatatgattttcttcaattattgatgatgt |
200 |
Q |
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| T |
1239619 |
attacacatgtctcagtatcagacaagtagcgtgtcggacaccgacacgacacatataattacacatgattatatgattttcttaaattattaatgatgt |
1239718 |
T |
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| Q |
201 |
c |
201 |
Q |
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| T |
1239719 |
c |
1239719 |
T |
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Target: scaffold0039 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 84979 - 85021
Alignment:
| Q |
148 |
cgacacatataattacacatgattatatgattttcttcaatta |
190 |
Q |
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| T |
84979 |
cgacatatataattacacataattatatgattttcttaaatta |
85021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 193
Target Start/End: Original strand, 39695988 - 39696050
Alignment:
| Q |
131 |
cgtgtcggacaccgacacgacacatataattacacatgattatatgattttcttcaattattg |
193 |
Q |
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| T |
39695988 |
cgtgtcggacaccgacacgacacctatgattacactaaattatatcattttctcaaattattg |
39696050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 165
Target Start/End: Complemental strand, 24343576 - 24343543
Alignment:
| Q |
132 |
gtgtcggacaccgacacgacacatataattacac |
165 |
Q |
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| T |
24343576 |
gtgtcggacaccgacacgacacctataattacac |
24343543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 40742644 - 40742591
Alignment:
| Q |
148 |
cgacacatataattacacatgattatatgattttcttcaattattgatgatgtc |
201 |
Q |
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| T |
40742644 |
cgacacatataattacactagattatatgattttctcaaattattaatggtgtc |
40742591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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