View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5458-Insertion-1 (Length: 961)
Name: NF5458-Insertion-1
Description: NF5458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5458-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 411 - 958
Target Start/End: Complemental strand, 54022934 - 54022413
Alignment:
| Q |
411 |
ctacttgcttttaatttatagatttcaatactgtacgttaatttccacttgatctcgcaagttcgtattggacaagaaaaagccggtagacnnnnnnngg |
510 |
Q |
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| T |
54022934 |
ctacttgcttttaatttatagatttcaatactgtacgttaatttccacttgatctcgcaagttcgtattggacaataaaaagccggtagacaaaaaaagg |
54022835 |
T |
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| Q |
511 |
ctagatttatttatatgataaacaatgatattgtttccagtaaagctaaaaatcaaagattaagaaaagtgatgataaatgaaatgagtaggattcttca |
610 |
Q |
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| T |
54022834 |
ctagatttatttatatgataaacaatgatattgtttccagtaaagctaaaaatcaaagattaagaaaagtgatgataaatgaaatgagtaggattcttca |
54022735 |
T |
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| Q |
611 |
cctaataaaaccaaatcaatgcataattaatattgaaatgatgacgaatgtgtgtccaagttcaaagtgtcaaattttaataattcaaaataaagaacta |
710 |
Q |
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| T |
54022734 |
cctaat--------------gcataattaatattgaaatgatgacgaatgtgtgtccaagtttaaagtgtcaaattttaataactcaaaataaagaacta |
54022649 |
T |
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| Q |
711 |
tggaaatgctaacgtgtgtcataagaactttgnnnnnnnnnnnnnnnnggaatcctggtcatggtgtgtcgaaacgaaaataatttgaaccctttagtca |
810 |
Q |
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| T |
54022648 |
tggaaatgctaacgtgtgtcataagaactttgtttt------------ggaatcctggtcatggtgtgtcgaaacgaaaataatttgaaccctttagtca |
54022561 |
T |
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| Q |
811 |
gggccctggcaacgccaatgagtttgtgtattcacaattaagtttaatttggtttgattttataatggtatgtgcatgggtgcagagtgaagtggacttt |
910 |
Q |
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| T |
54022560 |
gggccctggcaacgccaatgagttcgtgtattcacaattaactttaatttggtttgattttataacggtatgtgcatgggtgcagagtgaagtggacttt |
54022461 |
T |
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| Q |
911 |
ttggggaagttctctcatccgaatcttgttaaactacttggctactgt |
958 |
Q |
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| T |
54022460 |
ttggggaagttctctcatccgaatcttgttaaactacttggctactgt |
54022413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 294; E-Value: 1e-164
Query Start/End: Original strand, 8 - 312
Target Start/End: Complemental strand, 54023332 - 54023027
Alignment:
| Q |
8 |
agagcctgagaactacagtagctggtggtggaaaaattgtgaagccgaatctaaaaatgttcacattggatgagttgaaaagtgcgacaagaaacttcag |
107 |
Q |
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| T |
54023332 |
agagcctgagaactacagtagctggtggtggaaaaattgtgaagccgaatctaaaaatgttcacattggatgagttgaaaagtgcgacaagaaacttcag |
54023233 |
T |
|
| Q |
108 |
accagacacaatacttggtgagggtggttttggtcgtgttttcaaaggatggattgacaaaaacactttcagaccatccaaagttggtgttggaattcct |
207 |
Q |
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| T |
54023232 |
accagacacaatacttggtgagggtggttttggtcgtgttttcaaaggatggattgacaaaaacactttcagaccatccaaagttggtgttggaattcct |
54023133 |
T |
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| Q |
208 |
gttgctgtcaaaaagtctagcgccgatagtctccaaggtttacaagaatggcaggtttgttaactaaaccacgttttttcaaccaaccaatctc-tttgc |
306 |
Q |
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| T |
54023132 |
gttgctgtcaaaaagtctagcgccgatagtctccaaggtttacaagaatggcaggtttgttaactaaaccacgttttttcaaccaaacaatctcttttgc |
54023033 |
T |
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| Q |
307 |
tacttc |
312 |
Q |
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| T |
54023032 |
tacttc |
54023027 |
T |
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