View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5458-Insertion-2 (Length: 719)

Name: NF5458-Insertion-2
Description: NF5458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5458-Insertion-2
NF5458-Insertion-2
[»] chr8 (18 HSPs)
chr8 (7-719)||(27119498-27120211)
chr8 (357-471)||(26479822-26479936)
chr8 (400-471)||(6950359-6950430)
chr8 (400-470)||(14949904-14949974)
chr8 (404-469)||(32840951-32841017)
chr8 (403-468)||(11188120-11188185)
chr8 (400-469)||(11770973-11771042)
chr8 (358-470)||(4560540-4560652)
chr8 (419-471)||(8255429-8255481)
chr8 (400-471)||(30918150-30918220)
chr8 (421-471)||(11183582-11183632)
chr8 (437-471)||(25869265-25869299)
chr8 (357-466)||(778431-778540)
chr8 (404-469)||(779027-779092)
chr8 (398-471)||(13000384-13000457)
chr8 (440-469)||(26284797-26284826)
chr8 (398-471)||(30191101-30191174)
chr8 (398-471)||(43504788-43504861)
[»] chr7 (16 HSPs)
chr7 (359-471)||(12234810-12234922)
chr7 (399-469)||(25670547-25670617)
chr7 (357-469)||(34035956-34036068)
chr7 (398-470)||(33894665-33894737)
chr7 (397-471)||(4966193-4966267)
chr7 (398-471)||(33645920-33645994)
chr7 (421-469)||(46082075-46082123)
chr7 (399-470)||(12242282-12242353)
chr7 (400-471)||(48157082-48157153)
chr7 (357-415)||(30751612-30751670)
chr7 (438-471)||(24363601-24363634)
chr7 (437-470)||(25797023-25797056)
chr7 (495-528)||(28340473-28340506)
chr7 (419-464)||(28520993-28521038)
chr7 (540-573)||(28691970-28692003)
chr7 (398-471)||(34754770-34754843)
[»] scaffold0311 (1 HSPs)
scaffold0311 (396-471)||(10575-10650)
[»] chr2 (21 HSPs)
chr2 (359-466)||(40158760-40158867)
chr2 (396-469)||(44606068-44606141)
chr2 (355-467)||(787373-787485)
chr2 (398-465)||(5902509-5902576)
chr2 (494-537)||(33267592-33267635)
chr2 (498-545)||(44439440-44439487)
chr2 (541-575)||(15171129-15171163)
chr2 (421-470)||(43065433-43065482)
chr2 (398-471)||(43456667-43456740)
chr2 (398-466)||(43199744-43199812)
chr2 (493-548)||(29633012-29633067)
chr2 (491-574)||(7282928-7283015)
chr2 (357-459)||(22878147-22878249)
chr2 (405-471)||(28677626-28677692)
chr2 (441-471)||(41032958-41032988)
chr2 (398-467)||(7283037-7283106)
chr2 (541-574)||(9477859-9477892)
chr2 (404-469)||(11063527-11063592)
chr2 (438-471)||(14300427-14300460)
chr2 (428-469)||(30538163-30538204)
chr2 (398-471)||(41809205-41809278)
[»] chr6 (25 HSPs)
chr6 (396-471)||(281806-281881)
chr6 (396-471)||(2460109-2460184)
chr6 (421-472)||(20377903-20377954)
chr6 (398-471)||(33498656-33498729)
chr6 (357-469)||(33089545-33089657)
chr6 (421-471)||(3217173-3217223)
chr6 (437-471)||(7785743-7785777)
chr6 (491-537)||(31672541-31672587)
chr6 (419-469)||(33832254-33832304)
chr6 (421-470)||(1669781-1669830)
chr6 (398-471)||(7931686-7931759)
chr6 (400-469)||(8364938-8365007)
chr6 (398-466)||(769180-769248)
chr6 (398-466)||(2732207-2732275)
chr6 (398-462)||(28660720-28660784)
chr6 (398-466)||(30863288-30863356)
chr6 (403-471)||(31583716-31583784)
chr6 (437-471)||(3155212-3155246)
chr6 (381-471)||(10031769-10031859)
chr6 (437-471)||(27909637-27909671)
chr6 (400-470)||(31958546-31958616)
chr6 (357-471)||(33788002-33788115)
chr6 (408-469)||(9027617-9027678)
chr6 (400-445)||(26559201-26559246)
chr6 (398-471)||(28088183-28088255)
[»] chr3 (30 HSPs)
chr3 (370-469)||(41724251-41724350)
chr3 (361-468)||(24624250-24624357)
chr3 (355-470)||(36646299-36646414)
chr3 (402-471)||(37273171-37273240)
chr3 (398-471)||(43115093-43115166)
chr3 (491-544)||(44284131-44284184)
chr3 (399-467)||(34707457-34707525)
chr3 (409-469)||(47249457-47249517)
chr3 (405-469)||(50600145-50600209)
chr3 (400-467)||(11039301-11039368)
chr3 (438-469)||(16990161-16990192)
chr3 (396-471)||(26542574-26542649)
chr3 (400-471)||(27290863-27290934)
chr3 (428-471)||(36200133-36200176)
chr3 (400-471)||(40122715-40122786)
chr3 (493-544)||(40122827-40122878)
chr3 (434-469)||(41671349-41671384)
chr3 (398-472)||(11253537-11253611)
chr3 (357-451)||(21872214-21872308)
chr3 (540-574)||(24235824-24235858)
chr3 (398-468)||(45541611-45541681)
chr3 (421-471)||(48048965-48049015)
chr3 (494-544)||(49586992-49587042)
chr3 (494-543)||(10101552-10101601)
chr3 (494-543)||(10212477-10212526)
chr3 (494-543)||(15304423-15304472)
chr3 (357-470)||(20210847-20210960)
chr3 (356-426)||(25129960-25130034)
chr3 (437-470)||(30923897-30923930)
chr3 (404-469)||(54837000-54837065)
[»] chr4 (15 HSPs)
chr4 (355-469)||(39178183-39178297)
chr4 (398-471)||(50799990-50800063)
chr4 (396-471)||(27123310-27123385)
chr4 (398-471)||(3176064-3176137)
chr4 (400-470)||(23819127-23819197)
chr4 (398-471)||(1137749-1137822)
chr4 (398-470)||(9843213-9843285)
chr4 (398-469)||(4691887-4691958)
chr4 (407-469)||(6978931-6978993)
chr4 (357-391)||(41603132-41603166)
chr4 (401-467)||(47118928-47118994)
chr4 (437-471)||(55547043-55547077)
chr4 (422-467)||(2841667-2841712)
chr4 (398-471)||(20936189-20936262)
chr4 (398-471)||(28232582-28232655)
[»] chr1 (29 HSPs)
chr1 (395-469)||(38578567-38578641)
chr1 (398-469)||(31517700-31517771)
chr1 (381-470)||(15581292-15581381)
chr1 (437-471)||(4549267-4549301)
chr1 (355-469)||(4868439-4868552)
chr1 (428-470)||(30371186-30371228)
chr1 (357-471)||(33723301-33723415)
chr1 (398-460)||(42336663-42336725)
chr1 (398-471)||(4768789-4768862)
chr1 (360-469)||(10199330-10199439)
chr1 (398-471)||(17420240-17420313)
chr1 (357-414)||(24460320-24460377)
chr1 (397-470)||(29929580-29929653)
chr1 (400-465)||(38001639-38001704)
chr1 (358-469)||(6659719-6659830)
chr1 (422-469)||(29635386-29635433)
chr1 (398-469)||(37593644-37593715)
chr1 (398-465)||(38170650-38170717)
chr1 (396-467)||(43954004-43954074)
chr1 (356-431)||(50644173-50644247)
chr1 (428-470)||(3223705-3223747)
chr1 (437-471)||(12477286-12477320)
chr1 (405-471)||(15579519-15579585)
chr1 (359-465)||(18327067-18327173)
chr1 (397-471)||(33108581-33108655)
chr1 (437-471)||(33722400-33722434)
chr1 (494-560)||(33723458-33723524)
chr1 (491-544)||(6976892-6976945)
chr1 (398-467)||(32515401-32515470)
[»] scaffold0024 (1 HSPs)
scaffold0024 (382-471)||(27613-27702)
[»] chr5 (18 HSPs)
chr5 (400-469)||(7674687-7674756)
chr5 (398-471)||(10907415-10907488)
chr5 (357-471)||(499650-499764)
chr5 (357-469)||(12459920-12460032)
chr5 (398-470)||(16457573-16457645)
chr5 (421-465)||(18700427-18700471)
chr5 (440-471)||(18704038-18704069)
chr5 (437-471)||(35963278-35963312)
chr5 (496-537)||(985584-985625)
chr5 (357-390)||(3280655-3280688)
chr5 (398-466)||(7907923-7907992)
chr5 (364-469)||(10125644-10125749)
chr5 (428-469)||(10272421-10272462)
chr5 (398-471)||(10391379-10391452)
chr5 (437-470)||(17369438-17369471)
chr5 (499-573)||(21782650-21782728)
chr5 (370-471)||(37611147-37611248)
chr5 (370-471)||(37787877-37787978)
[»] scaffold0153 (2 HSPs)
scaffold0153 (437-471)||(6493-6527)
scaffold0153 (437-471)||(13513-13547)
[»] scaffold0147 (1 HSPs)
scaffold0147 (421-466)||(12687-12732)


Alignment Details
Target: chr8 (Bit Score: 631; Significance: 0; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 7 - 719
Target Start/End: Original strand, 27119498 - 27120211
Alignment:
Q  7 aagtttaaggctaccgattctccgcttccggtgattattcactctcttttacatttgtttttgtttctctagctaggctgtggaatttctagctagcttg 106  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27119498 aagtttaaggctacagattctccgcttccggtgattattcactctcttctacatttgtttttgtttctctagctaggctgtggaatttctagctagcttg 27119597  T
Q  107 ctgattttacttgtttttcttaagtacatcttagttctattgcttctagcaaaagaagaaaagggtatgaattcaatagctatgatagtggagagtataa 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27119598 ctgattttacttgtttttcttaagtacatcttagttctattgcttctagcgaaagaagaaaagggtatgaattcaatagctatgatagtggagagtataa 27119697  T
Q  207 agttagttatcatagaagatgattttaaatttgagcaaagcttactgaaattgggtggaatctgtgtgaagatattggatgttgcattattacttttgca 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27119698 agttagttatcatagaagatgattttaaatttgagcaaagcttactgaaattgggtggaatctgtgtgaagatattggatgttgcattattacttttgca 27119797  T
Q  307 agaaaatttaggttgaaaaacaaaataactgctctagttaatttagctcttgtttggattgacttatttaaacatatctactgacaattgtacttgtgag 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27119798 agaaaatttaggttgaaaaacaaaataactgctctagttaatttagctcttgtttggattgacttatttaaacatatctactgacaattgtacttgtgag 27119897  T
Q  407 actgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcccgttaactattcnnnnnnngcttatgaaaacagtt 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||       ||||||||||||||||    
T  27119898 actgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttattt-ccgttaactattcaaaaaaagcttatgaaaacagtt 27119996  T
Q  507 taactttattttattgtttgttatggaaataccttataaacacttaattaagttatttatccaaacaaatttttgtattctaggaataattaagtaatga 606  Q
    ||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27119997 taactttatgttatcgtttgttatagaaataccttataaacacttaattaagttatttatccaaacaaatttttgtattctaggaataattaagtaatga 27120096  T
Q  607 aatcaaatttggcttgttttgtcctatagactgttcctggctatgatgttgctggggttgtagcgaaggtcggcagtgaactaaaggact--caagttgg 704  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||   |||||||    
T  27120097 aatcaaatttggcttattttgtcctatagactgttcctggctatgatgttgctggggttgtagtgaaggttggcagtgaagtaaaggacttcaaagttgg 27120196  T
Q  705 tgatgaagtgtatgg 719  Q
    |||||||||||||||    
T  27120197 tgatgaagtgtatgg 27120211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 357 - 471
Target Start/End: Complemental strand, 26479936 - 26479822
Alignment:
Q  357 tgtttggattgacttatttaaacatatctactgacaattgtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgt 456  Q
    ||||||||||||||||||||| | |||||| |||||   | |||||||| ||| ||||  | | |||||| |||| ||| ||| |||||||||||||| |    
T  26479936 tgtttggattgacttatttaagcttatctattgacacaaggacttgtgaaactatttgcgagagcttatggaaacaacttatgtcatgtctataagtttt 26479837  T
Q  457 tttcagcttatttcc 471  Q
    ||||||| |||||||    
T  26479836 tttcagcgtatttcc 26479822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 400 - 471
Target Start/End: Complemental strand, 6950430 - 6950359
Alignment:
Q  400 ttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    |||||||| ||||||| | | |||||| |||| ||  |||||||||| ||||||||||||||||||||||||    
T  6950430 ttgtgagattgtttgggagagcttatgtaaacaacctatgacatgtcgataagttgttttcagcttatttcc 6950359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 400 - 470
Target Start/End: Complemental strand, 14949974 - 14949904
Alignment:
Q  400 ttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttc 470  Q
    |||||||||||||| | | | ||||||||||  ||| |||||||||| ||||| |||||||||||||||||    
T  14949974 ttgtgagactgtttaggagagcttatgaaaataacttatgacatgtccataagctgttttcagcttatttc 14949904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 404 - 469
Target Start/End: Original strand, 32840951 - 32841017
Alignment:
Q  404 gagactgtttggaataacttatgaaaaccactaatgaca-tgtctataagttgttttcagcttattt 469  Q
    |||||||||||| | ||||||||||||| ||| |||||| |||  ||||||||||||||||||||||    
T  32840951 gagactgtttgggagaacttatgaaaacaacttatgacattgttcataagttgttttcagcttattt 32841017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 403 - 468
Target Start/End: Original strand, 11188120 - 11188185
Alignment:
Q  403 tgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatt 468  Q
    ||||||||||| | |||||| ||||||||  || ||||||||||||||| |||||||||| |||||    
T  11188120 tgagactgtttaggataactaatgaaaacagcttatgacatgtctataacttgttttcagtttatt 11188185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 400 - 469
Target Start/End: Original strand, 11770973 - 11771042
Alignment:
Q  400 ttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttattt 469  Q
    |||| |||||||||  || ||||||||||||| ||| |||| ||||||||| |||||||||| |||||||    
T  11770973 ttgttagactgtttaaaagaacttatgaaaacaacttatgatatgtctatacgttgttttcaacttattt 11771042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 358 - 470
Target Start/End: Complemental strand, 4560652 - 4560540
Alignment:
Q  358 gtttggattgacttatttaaacatatctactgacaattgtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgtt 457  Q
    |||||||||||||||||| | | |||||| |||||   | |||||||||  ||||||||| |||||||| |||  ||| || |||||||  |||| ||||    
T  4560652 gtttggattgacttatttgagcttatctattgacataagcacttgtgaggttgtttggaagaacttatggaaataacttataacatgtcagtaagctgtt 4560553  T
Q  458 ttcagcttatttc 470  Q
    ||||| |||||||    
T  4560552 ttcagattatttc 4560540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 419 - 471
Target Start/End: Complemental strand, 8255481 - 8255429
Alignment:
Q  419 aacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    |||||||| |||| |||||||||||||  |||||||||||||| |||||||||    
T  8255481 aacttatggaaacaactaatgacatgtgcataagttgttttcaccttatttcc 8255429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 400 - 471
Target Start/End: Complemental strand, 30918220 - 30918150
Alignment:
Q  400 ttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    |||||||||||||||  | | ||||||||||| |||  |||||| || ||||||||||||||||||||||||    
T  30918220 ttgtgagactgtttgagagagcttatgaaaacaacttgtgacatttc-ataagttgttttcagcttatttcc 30918150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 421 - 471
Target Start/End: Complemental strand, 11183632 - 11183582
Alignment:
Q  421 cttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    ||||| ||||| ||| |||| ||||||||||| ||||||||||||||||||    
T  11183632 cttataaaaacaacttatgatatgtctataagctgttttcagcttatttcc 11183582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 25869265 - 25869299
Alignment:
Q  437 atgacatgtctataagttgttttcagcttatttcc 471  Q
    |||||||||| ||||||||||||||||||||||||    
T  25869265 atgacatgtccataagttgttttcagcttatttcc 25869299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 357 - 466
Target Start/End: Complemental strand, 778540 - 778431
Alignment:
Q  357 tgtttggattgacttatttaaacatatctactgacaattgtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgt 456  Q
    ||||||| |||||||||||  || ||| |||||| |   | ||||||||||||||||| || ||||||||||||| ||  | |||| || | ||||||||    
T  778540 tgtttggtttgacttatttgtacttatttactgaaataagcacttgtgagactgtttgcaagaacttatgaaaacaacataagacacgtttgtaagttgt 778441  T
Q  457 tttcagctta 466  Q
    ||||| ||||    
T  778440 tttcaactta 778431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 404 - 469
Target Start/End: Original strand, 779027 - 779092
Alignment:
Q  404 gagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttattt 469  Q
    |||| |||||| || |||||| |||||| ||| |||||||||  |||||||||||||| |||||||    
T  779027 gagattgtttgaaagaacttacgaaaacaacttatgacatgttcataagttgttttcatcttattt 779092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 398 - 471
Target Start/End: Original strand, 13000384 - 13000457
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    |||||||||||| |||| || |  |||||  ||| ||| |||||||||| | ||||||||||||||||||||||    
T  13000384 acttgtgagactatttgcaagagtttatggtaacaacttatgacatgtccacaagttgttttcagcttatttcc 13000457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 440 - 469
Target Start/End: Original strand, 26284797 - 26284826
Alignment:
Q  440 acatgtctataagttgttttcagcttattt 469  Q
    ||||||||||||||||||||||||||||||    
T  26284797 acatgtctataagttgttttcagcttattt 26284826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 398 - 471
Target Start/End: Original strand, 30191101 - 30191174
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    |||||| ||||||||||| | | |||||| |||| ||| |||||||||  | || |||||||||||||||||||    
T  30191101 acttgttagactgtttgggagagcttatggaaacaacttatgacatgttcaaaacttgttttcagcttatttcc 30191174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 398 - 471
Target Start/End: Complemental strand, 43504861 - 43504788
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    ||||||| |||||||| | | |||| |||||||| ||| | ||| ||| |||||| ||||||||||||||||||    
T  43504861 acttgtgtgactgtttcggagaactgatgaaaacaacttacgacttgtttataagctgttttcagcttatttcc 43504788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 359 - 471
Target Start/End: Original strand, 12234810 - 12234922
Alignment:
Q  359 tttggattgacttatttaaacatatctactgacaattgtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttt 458  Q
    |||||||||||||| || | | ||||||||| || | | || |||||||||| |||||||| |||||  |||| ||| |||||||||||||||| |||||    
T  12234810 tttggattgacttagttgagcttatctactggcattagcacgtgtgagactgcttggaatagcttatagaaacaacttatgacatgtctataagctgttt 12234909  T
Q  459 tcagcttatttcc 471  Q
    |||||||||||||    
T  12234910 tcagcttatttcc 12234922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 399 - 469
Target Start/End: Original strand, 25670547 - 25670617
Alignment:
Q  399 cttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttattt 469  Q
    ||||||||||||||||  | ||||||||||||| ||| |||||||||  |||| |||||||||||||||||    
T  25670547 cttgtgagactgtttgagaaaacttatgaaaacaacttatgacatgttaataaattgttttcagcttattt 25670617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 357 - 469
Target Start/End: Complemental strand, 34036068 - 34035956
Alignment:
Q  357 tgtttggattgacttatttaaacatatctactgacaattgtacttgtgagactgtttggaataacttatgaaaaccactaatgaca-tgtctataagttg 455  Q
    |||||| |||||||||||| | | ||||||||||||  |||| ||||||||||  |||||| ||||||||||||  ||| |||||| |||  ||||||||    
T  34036068 tgtttgaattgacttatttgagcttatctactgacatatgta-ttgtgagactacttggaagaacttatgaaaataacttatgacattgttcataagttg 34035970  T
Q  456 ttttcagcttattt 469  Q
    |||||| |||||||    
T  34035969 ttttcaacttattt 34035956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 398 - 470
Target Start/End: Complemental strand, 33894737 - 33894665
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttc 470  Q
    |||||||||||||||||  | | |||||||||||  |  |||||||||| |||||||||||||||||||||||    
T  33894737 acttgtgagactgtttgtgagagcttatgaaaacagcatatgacatgtccataagttgttttcagcttatttc 33894665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 397 - 471
Target Start/End: Complemental strand, 4966267 - 4966193
Alignment:
Q  397 tacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    ||||||||||||||||| | | | |||||  |||||||| |||| ||||| ||||||||||||||| ||||||||    
T  4966267 tacttgtgagactgtttaggagagcttatagaaaccacttatgatatgtccataagttgttttcagtttatttcc 4966193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 398 - 471
Target Start/End: Original strand, 33645920 - 33645994
Alignment:
Q  398 acttgtgagactgtttgga-ataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    ||||||||||||| ||||| | | |||||| |||| ||| ||||||||||||||||||||||| || ||||||||    
T  33645920 acttgtgagactggttggagagagcttatggaaacaacttatgacatgtctataagttgtttttaggttatttcc 33645994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 421 - 469
Target Start/End: Complemental strand, 46082123 - 46082075
Alignment:
Q  421 cttatgaaaaccactaatgacatgtctataagttgttttcagcttattt 469  Q
    ||||||||||| ||| |||||||| | ||||||||||||||||||||||    
T  46082123 cttatgaaaacaacttatgacatgaccataagttgttttcagcttattt 46082075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 399 - 470
Target Start/End: Complemental strand, 12242353 - 12242282
Alignment:
Q  399 cttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttc 470  Q
    ||||||||||||||||  | | |||||| ||||  || |||| ||| |||||||||||||||||||||||||    
T  12242353 cttgtgagactgtttgagagagcttatgcaaacggcttatgatatgcctataagttgttttcagcttatttc 12242282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 400 - 471
Target Start/End: Original strand, 48157082 - 48157153
Alignment:
Q  400 ttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    |||||||||||||||| | | |||||  |||| ||| ||| |||||| ||||| ||||||||||||||||||    
T  48157082 ttgtgagactgtttgggagagcttatagaaacaacttatgccatgtccataagctgttttcagcttatttcc 48157153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 357 - 415
Target Start/End: Complemental strand, 30751670 - 30751612
Alignment:
Q  357 tgtttggattgacttatttaaacatatctactgacaattgtacttgtgagactgtttgg 415  Q
    |||||||||| |||||||||||| ||||||||||||   | ||||||| ||||||||||    
T  30751670 tgtttggattaacttatttaaacttatctactgacataagcacttgtgcgactgtttgg 30751612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 471
Target Start/End: Original strand, 24363601 - 24363634
Alignment:
Q  438 tgacatgtctataagttgttttcagcttatttcc 471  Q
    ||||||||| ||||||||||||||||||||||||    
T  24363601 tgacatgtccataagttgttttcagcttatttcc 24363634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 437 - 470
Target Start/End: Original strand, 25797023 - 25797056
Alignment:
Q  437 atgacatgtctataagttgttttcagcttatttc 470  Q
    |||||||||||| |||||||||||||||||||||    
T  25797023 atgacatgtctacaagttgttttcagcttatttc 25797056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 495 - 528
Target Start/End: Original strand, 28340473 - 28340506
Alignment:
Q  495 atgaaaacagtttaactttattttattgtttgtt 528  Q
    ||||||||||||| ||||||||||||||||||||    
T  28340473 atgaaaacagtttgactttattttattgtttgtt 28340506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 464
Target Start/End: Original strand, 28520993 - 28521038
Alignment:
Q  419 aacttatgaaaaccactaatgacatgtctataagttgttttcagct 464  Q
    |||||||| |||| ||| |||||||||||||||| |||||||||||    
T  28520993 aacttatggaaacaacttatgacatgtctataagctgttttcagct 28521038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 540 - 573
Target Start/End: Original strand, 28691970 - 28692003
Alignment:
Q  540 ttataaacacttaattaagttatttatccaaaca 573  Q
    ||||||||||||||||||||| ||||||||||||    
T  28691970 ttataaacacttaattaagttgtttatccaaaca 28692003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 398 - 471
Target Start/End: Original strand, 34754770 - 34754843
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    |||| ||||||||||||  | | |||| ||||||  || |||||| | ||||||||||||||||||||||||||    
T  34754770 acttatgagactgtttgagagagcttaagaaaacatcttatgacaagcctataagttgttttcagcttatttcc 34754843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 396 - 471
Target Start/End: Original strand, 10575 - 10650
Alignment:
Q  396 gtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    |||||||||||||||||||  | | |||||| |||| |||||||||||||| ||||||||||||||||||||||||    
T  10575 gtacttgtgagactgtttgacaaagcttatgtaaacaactaatgacatgtccataagttgttttcagcttatttcc 10650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 5e-18; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 359 - 466
Target Start/End: Complemental strand, 40158867 - 40158760
Alignment:
Q  359 tttggattgacttatttaaacatatctactgacaattgtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttt 458  Q
    ||||||||| ||||||| | ||||||||||||||   | ||||||||||||| ||||   |||||||||||||  || ||||||||| ||||||||||||    
T  40158867 tttggattggcttatttgagcatatctactgacataagaacttgtgagactgattgggggaacttatgaaaacagcttatgacatgtttataagttgttt 40158768  T
Q  459 tcagctta 466  Q
    ||||||||    
T  40158767 tcagctta 40158760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 396 - 469
Target Start/End: Original strand, 44606068 - 44606141
Alignment:
Q  396 gtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttattt 469  Q
    ||||||||  |||||||||||| ||||||||||||| ||| |||||||||| ||||||||||||||||| ||||    
T  44606068 gtacttgtacgactgtttggaagaacttatgaaaacaacttatgacatgtccataagttgttttcagctgattt 44606141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 467
Target Start/End: Complemental strand, 787485 - 787373
Alignment:
Q  355 cttgtttggattgacttatttaaacatatctactgacaattgtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagtt 454  Q
    |||||||||||||  |||||  | ||||||||||| ||   | |||||||| ||||||||  | |||||||||||||  || |||||||||| ||||| |    
T  787485 cttgtttggattggattattcgagcatatctactggcataagcacttgtgacactgtttgtgagaacttatgaaaacagcttatgacatgtccataagct 787386  T
Q  455 gttttcagcttat 467  Q
    |||||||||||||    
T  787385 gttttcagcttat 787373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 398 - 465
Target Start/End: Original strand, 5902509 - 5902576
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagctt 465  Q
    |||||||||||||||||||| |||||||||||||  || |||||||||  ||||  ||||||||||||    
T  5902509 acttgtgagactgtttggaagaacttatgaaaacagcttatgacatgttcataaactgttttcagctt 5902576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 494 - 537
Target Start/End: Original strand, 33267592 - 33267635
Alignment:
Q  494 tatgaaaacagtttaactttattttattgtttgttatggaaata 537  Q
    |||||||||||||||||||||||||| |||||||||| ||||||    
T  33267592 tatgaaaacagtttaactttattttactgtttgttatagaaata 33267635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 498 - 545
Target Start/End: Original strand, 44439440 - 44439487
Alignment:
Q  498 aaaacagtttaactttattttattgtttgttatggaaataccttataa 545  Q
    |||||||||||||||||||||||  ||||||||||||||| |||||||    
T  44439440 aaaacagtttaactttattttatattttgttatggaaataacttataa 44439487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 575
Target Start/End: Complemental strand, 15171163 - 15171129
Alignment:
Q  541 tataaacacttaattaagttatttatccaaacaaa 575  Q
    |||||||||||||||||||||||||||||||||||    
T  15171163 tataaacacttaattaagttatttatccaaacaaa 15171129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 421 - 470
Target Start/End: Original strand, 43065433 - 43065482
Alignment:
Q  421 cttatgaaaaccactaatgacatgtctataagttgttttcagcttatttc 470  Q
    ||||||||||| ||| |||||||||| |||| ||||||||||||||||||    
T  43065433 cttatgaaaacaacttatgacatgtccataaattgttttcagcttatttc 43065482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 398 - 471
Target Start/End: Original strand, 43456667 - 43456740
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    |||||| |||||||||| || | ||| ||||||| ||| |||||||||| ||||  ||||||||||||||||||    
T  43456667 acttgtaagactgtttgaaagagcttgtgaaaacaactcatgacatgtccataaactgttttcagcttatttcc 43456740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 398 - 466
Target Start/End: Original strand, 43199744 - 43199812
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagctta 466  Q
    |||||||||||||||||| | || ||| ||| || |||  |||||||| ||||||||||||||||||||    
T  43199744 acttgtgagactgtttgggagaagttacgaatacaacttgtgacatgtttataagttgttttcagctta 43199812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 493 - 548
Target Start/End: Complemental strand, 29633067 - 29633012
Alignment:
Q  493 ttatgaaaacagtttaactttattttattgtttgttatggaaataccttataaaca 548  Q
    ||||||||||| ||| |||||||| |||| |||||||| |||||| ||||||||||    
T  29633067 ttatgaaaacaatttgactttattctattttttgttatagaaataacttataaaca 29633012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 491 - 574
Target Start/End: Complemental strand, 7283015 - 7282928
Alignment:
Q  491 gcttatgaaaacagtttaactttattttattgtttgttatggaaatacctt----ataaacacttaattaagttatttatccaaacaa 574  Q
    ||||||||||||||||| |||| ||||| |  ||| ||||  ||||| |||    |||||||||||||||| ||||||||||||||||    
T  7283015 gcttatgaaaacagtttgacttcattttttcttttcttataaaaatagcttatacataaacacttaattaaattatttatccaaacaa 7282928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 357 - 459
Target Start/End: Complemental strand, 22878249 - 22878147
Alignment:
Q  357 tgtttggattgacttatttaaacatatctactgacaattgtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgt 456  Q
    ||||||||||||||||||| | | |||| |||||||   | |||||||||||||||||| | | |||||| |||| | | ||||||  |||||||||| |    
T  22878249 tgtttggattgacttatttgagcttatccactgacataagcacttgtgagactgtttgggagaccttatggaaacaaattatgacacatctataagtttt 22878150  T
Q  457 ttt 459  Q
    |||    
T  22878149 ttt 22878147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 471
Target Start/End: Original strand, 28677626 - 28677692
Alignment:
Q  405 agactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    ||||||||||| | |||||||||||||  || ||||||| |  ||||||||||||| ||||||||||    
T  28677626 agactgtttgggagaacttatgaaaacagcttatgacattttcataagttgttttcggcttatttcc 28677692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 471
Target Start/End: Original strand, 41032958 - 41032988
Alignment:
Q  441 catgtctataagttgttttcagcttatttcc 471  Q
    |||||||||||||||||||||||||||||||    
T  41032958 catgtctataagttgttttcagcttatttcc 41032988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 398 - 467
Target Start/End: Complemental strand, 7283106 - 7283037
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttat 467  Q
    |||||||||||| |||||| || ||| || |||| ||| |||| ||||| |||||||||||||| |||||    
T  7283106 acttgtgagactatttggattagcttttggaaacaacttatgatatgtccataagttgttttcatcttat 7283037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 541 - 574
Target Start/End: Complemental strand, 9477892 - 9477859
Alignment:
Q  541 tataaacacttaattaagttatttatccaaacaa 574  Q
    |||||||||||||||||||| |||||||||||||    
T  9477892 tataaacacttaattaagttgtttatccaaacaa 9477859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 404 - 469
Target Start/End: Complemental strand, 11063592 - 11063527
Alignment:
Q  404 gagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttattt 469  Q
    |||||||||||||| | |||||| ||||   | |||||||||| |||||||||||| |||||||||    
T  11063592 gagactgtttggaagagcttatggaaacatattatgacatgtccataagttgtttttagcttattt 11063527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 471
Target Start/End: Original strand, 14300427 - 14300460
Alignment:
Q  438 tgacatgtctataagttgttttcagcttatttcc 471  Q
    |||||||||||||||||||||| |||||||||||    
T  14300427 tgacatgtctataagttgtttttagcttatttcc 14300460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 428 - 469
Target Start/End: Original strand, 30538163 - 30538204
Alignment:
Q  428 aaaccactaatgacatgtctataagttgttttcagcttattt 469  Q
    |||| ||| |||||||||| ||||||||||||||||||||||    
T  30538163 aaacaacttatgacatgtccataagttgttttcagcttattt 30538204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 398 - 471
Target Start/End: Original strand, 41809205 - 41809278
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    ||||||||||||| ||| || | ||| || |||| ||| |||||||||  |||||||||||| |||||||||||    
T  41809205 acttgtgagactgattgtaagagcttgtggaaacaacttatgacatgttcataagttgtttttagcttatttcc 41809278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 396 - 471
Target Start/End: Original strand, 281806 - 281881
Alignment:
Q  396 gtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    |||||||||||||||||||| | | || ||| || | ||| |||||||||||||||||||||||||||||||||||    
T  281806 gtacttgtgagactgtttgggagagctaatggaagcaacttatgacatgtctataagttgttttcagcttatttcc 281881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 396 - 471
Target Start/End: Original strand, 2460109 - 2460184
Alignment:
Q  396 gtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    |||||||||||||||||||  | | |||||| |||| ||| ||||||||||| ||||||||||||| |||||||||    
T  2460109 gtacttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttcc 2460184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 421 - 472
Target Start/End: Original strand, 20377903 - 20377954
Alignment:
Q  421 cttatgaaaaccactaatgacatgtctataagttgttttcagcttatttccc 472  Q
    ||||||||||| ||| |||||||||||||||||||||||| |||||||||||    
T  20377903 cttatgaaaacaacttatgacatgtctataagttgttttcggcttatttccc 20377954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 398 - 471
Target Start/End: Complemental strand, 33498729 - 33498656
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    |||| ||||||| ||||| | | ||||||||||| ||| |||||||||||||| ||| ||||||||||||||||    
T  33498729 acttctgagactttttggtagagcttatgaaaacaacttatgacatgtctataggttattttcagcttatttcc 33498656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 357 - 469
Target Start/End: Complemental strand, 33089657 - 33089545
Alignment:
Q  357 tgtttggattgacttatttaaacatatctactgacaattgtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgt 456  Q
    ||||||| ||||||||||| | | ||||||||||||  |||| |||||||||| |||   | |||||||||||||  || | ||||||| ||||||||||    
T  33089657 tgtttgggttgacttatttgagcttatctactgacatatgtatttgtgagactatttcagagaacttatgaaaacagcttaggacatgtttataagttgt 33089558  T
Q  457 tttcagcttattt 469  Q
    |||  ||||||||    
T  33089557 tttacgcttattt 33089545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 421 - 471
Target Start/End: Original strand, 3217173 - 3217223
Alignment:
Q  421 cttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    ||||||||||| ||| |||||| ||| ||||||||||||||||||||||||    
T  3217173 cttatgaaaacaactgatgacacgtcgataagttgttttcagcttatttcc 3217223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 7785743 - 7785777
Alignment:
Q  437 atgacatgtctataagttgttttcagcttatttcc 471  Q
    |||||||||||||||||||||||||||||||||||    
T  7785743 atgacatgtctataagttgttttcagcttatttcc 7785777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 491 - 537
Target Start/End: Original strand, 31672541 - 31672587
Alignment:
Q  491 gcttatgaaaacagtttaactttattttattgtttgttatggaaata 537  Q
    ||||||||||||||||| ||||||||||||| ||||| |||||||||    
T  31672541 gcttatgaaaacagtttgactttattttattttttgtcatggaaata 31672587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 419 - 469
Target Start/End: Original strand, 33832254 - 33832304
Alignment:
Q  419 aacttatgaaaaccactaatgacatgtctataagttgttttcagcttattt 469  Q
    ||||||||||||| ||| ||||||||| ||||||||||||| |||||||||    
T  33832254 aacttatgaaaacaacttatgacatgtttataagttgtttttagcttattt 33832304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 421 - 470
Target Start/End: Original strand, 1669781 - 1669830
Alignment:
Q  421 cttatgaaaaccactaatgacatgtctataagttgttttcagcttatttc 470  Q
    ||||||||||| ||| |||||||||||||||| ||||||||||| |||||    
T  1669781 cttatgaaaacaacttatgacatgtctataagctgttttcagctcatttc 1669830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 398 - 471
Target Start/End: Original strand, 7931686 - 7931759
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    |||||||||||  ||| ||| | ||||||||||| ||| |||||||||   |||||||||||||||||||||||    
T  7931686 acttgtgagaccatttagaagagcttatgaaaacaacttatgacatgttcttaagttgttttcagcttatttcc 7931759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 400 - 469
Target Start/End: Original strand, 8364938 - 8365007
Alignment:
Q  400 ttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttattt 469  Q
    |||||||||||| ||||| |||||||| |||  ||| ||||||||| || ||| ||||||||||||||||    
T  8364938 ttgtgagactgtatggaagaacttatggaaataactgatgacatgtttacaagctgttttcagcttattt 8365007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 398 - 466
Target Start/End: Complemental strand, 769248 - 769180
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagctta 466  Q
    |||||||||||||||||||  |||||||||||||  || |||||||||  ||||| |||||||| ||||    
T  769248 acttgtgagactgtttggatgaacttatgaaaacatcttatgacatgttcataagctgttttcaactta 769180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 398 - 466
Target Start/End: Original strand, 2732207 - 2732275
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagctta 466  Q
    |||||||||||||||||||| | |||||| ||||  |||||||  |||| |||| ||||||||||||||    
T  2732207 acttgtgagactgtttggaaaagcttatggaaacagctaatgatctgtccataaattgttttcagctta 2732275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 398 - 462
Target Start/End: Original strand, 28660720 - 28660784
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcag 462  Q
    |||||||||| |||||| ||||||||||| ||  |||| ||||||||| ||||| ||||||||||    
T  28660720 acttgtgagagtgtttgaaataacttatggaacacacttatgacatgtttataaattgttttcag 28660784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 398 - 466
Target Start/End: Complemental strand, 30863356 - 30863288
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagctta 466  Q
    |||||| ||||| ||||| | | ||||||||||| ||| |||||||||  |||||||||||||||||||    
T  30863356 acttgttagactctttggtagagcttatgaaaacaacttatgacatgtacataagttgttttcagctta 30863288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 403 - 471
Target Start/End: Complemental strand, 31583784 - 31583716
Alignment:
Q  403 tgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    ||||||||||| | | | |||||  ||||| ||||||||||||| |||||||||||||| |||||||||    
T  31583784 tgagactgttttggagagcttatttaaaccgctaatgacatgtccataagttgttttcaacttatttcc 31583716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 437 - 471
Target Start/End: Complemental strand, 3155246 - 3155212
Alignment:
Q  437 atgacatgtctataagttgttttcagcttatttcc 471  Q
    |||||||||||||||| ||||||||||||||||||    
T  3155246 atgacatgtctataagctgttttcagcttatttcc 3155212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 381 - 471
Target Start/End: Complemental strand, 10031859 - 10031769
Alignment:
Q  381 tatctactgacaattgtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    ||||||||||||   | ||||||||||||||||| || | | ||||||| | ||| | ||||| || |||||||||||||| |||||||||    
T  10031859 tatctactgacataagcacttgtgagactgtttgaaagagcctatgaaaccaacttacgacatatccataagttgttttcatcttatttcc 10031769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 27909637 - 27909671
Alignment:
Q  437 atgacatgtctataagttgttttcagcttatttcc 471  Q
    |||||||||| ||||||||||||||||||||||||    
T  27909637 atgacatgtccataagttgttttcagcttatttcc 27909671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 400 - 470
Target Start/End: Original strand, 31958546 - 31958616
Alignment:
Q  400 ttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttc 470  Q
    ||||||||||| |||| | | ||||||||||||| ||||||||||||  |||  |||||| ||||||||||    
T  31958546 ttgtgagactgattgggagagcttatgaaaaccattaatgacatgtccttaatctgtttttagcttatttc 31958616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 357 - 471
Target Start/End: Complemental strand, 33788115 - 33788002
Alignment:
Q  357 tgtttggattgacttatttaaacatatctactgacaattgtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgt 456  Q
    ||||||||||||||||||||||| || ||||||||||  ||| |||| ||||| ||||  | | |||||| ||||  |  | |||| ||| ||||||| |    
T  33788115 tgtttggattgacttatttaaacttacctactgacaaaagtatttgttagactatttgtgaaagcttatggaaactgcgtaagacaagtccataagtt-t 33788017  T
Q  457 tttcagcttatttcc 471  Q
    |||||||||||||||    
T  33788016 tttcagcttatttcc 33788002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 408 - 469
Target Start/End: Complemental strand, 9027678 - 9027617
Alignment:
Q  408 ctgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttattt 469  Q
    ||||||| || | |||||| |||  ||| |||||||||| ||||||||||||||||||||||    
T  9027678 ctgtttgaaagagcttatggaaataacttatgacatgtccataagttgttttcagcttattt 9027617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 400 - 445
Target Start/End: Original strand, 26559201 - 26559246
Alignment:
Q  400 ttgtgagactgtttggaataacttatgaaaaccactaatgacatgt 445  Q
    |||||||||||||||||| ||||||||||||| ||| |||| ||||    
T  26559201 ttgtgagactgtttggaagaacttatgaaaacaacttatgatatgt 26559246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 398 - 471
Target Start/End: Original strand, 28088183 - 28088255
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    |||| |||||| |||||||||  |||||| |||| ||| || ||||||||||| |||||||| |||||||||||    
T  28088183 acttttgagacagtttggaatggcttatggaaacaacttat-acatgtctataggttgttttgagcttatttcc 28088255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 370 - 469
Target Start/End: Complemental strand, 41724350 - 41724251
Alignment:
Q  370 ttatttaaacatatctactgacaattgtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttattt 469  Q
    |||||| ||| ||||||||||||   |||||||| |||| |||||  | |||||||| |||| ||| |||||||||| ||||||||||||||||||||||    
T  41724350 ttatttgaacttatctactgacataagtacttgtcagacagtttgtgaaaacttatggaaacaacttatgacatgtccataagttgttttcagcttattt 41724251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 361 - 468
Target Start/End: Complemental strand, 24624357 - 24624250
Alignment:
Q  361 tggattgacttatttaaacatatctactgacaattgtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttc 460  Q
    ||||||| |||| || ||| |||||||| ||| | | |||||| ||||||||||||| | |||||||||||  || |||||||||| ||||  |||||||    
T  24624357 tggattggcttagttgaacttatctactcacattagcacttgtaagactgtttggaagagcttatgaaaacagcttatgacatgtccataaactgttttc 24624258  T
Q  461 agcttatt 468  Q
    ||||||||    
T  24624257 agcttatt 24624250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 355 - 470
Target Start/End: Original strand, 36646299 - 36646414
Alignment:
Q  355 cttgtttggattgacttatttaaacatatctactgacaattgtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagtt 454  Q
    ||||||||||| ||||||||||| |||||||| || ||   | |||||| ||||| ||||| | | |||||| |||||||| ||| |||||| ||||| |    
T  36646299 cttgtttggatcgacttatttaagcatatctattggcataggcacttgtaagactatttgggagagcttatggaaaccacttatggcatgtccataagct 36646398  T
Q  455 gttttcagcttatttc 470  Q
    ||||||| ||||||||    
T  36646399 gttttcatcttatttc 36646414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 402 - 471
Target Start/End: Complemental strand, 37273240 - 37273171
Alignment:
Q  402 gtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    |||||||||||||| | | |||||| |||| ||| |||||||||| |||||||||||||| |||||||||    
T  37273240 gtgagactgtttgggagagcttatggaaacaacttatgacatgtccataagttgttttcaacttatttcc 37273171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 398 - 471
Target Start/End: Complemental strand, 43115166 - 43115093
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    |||||||||| ||||||||| |  ||||| |||| ||| |||||||||| |||| |||||||||||||||||||    
T  43115166 acttgtgagattgtttggaagagtttatggaaacaacttatgacatgtccataacttgttttcagcttatttcc 43115093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 544
Target Start/End: Original strand, 44284131 - 44284184
Alignment:
Q  491 gcttatgaaaacagtttaactttattttattgtttgttatggaaataccttata 544  Q
    ||||||||||||||||| ||||| ||||||| |||||||| |||||| ||||||    
T  44284131 gcttatgaaaacagtttgactttgttttattttttgttatagaaatagcttata 44284184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 399 - 467
Target Start/End: Original strand, 34707457 - 34707525
Alignment:
Q  399 cttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttat 467  Q
    ||||||||||||||||  | ||||| ||||||| |||  ||||||||| |||||||||||||| |||||    
T  34707457 cttgtgagactgtttgagagaacttttgaaaacaacttgtgacatgtccataagttgttttcaacttat 34707525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 409 - 469
Target Start/End: Original strand, 47249457 - 47249517
Alignment:
Q  409 tgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttattt 469  Q
    |||||| || ||||||||||||||||| |||||||||  ||||||||||||  ||||||||    
T  47249457 tgtttgaaagaacttatgaaaaccacttatgacatgttcataagttgtttttggcttattt 47249517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 405 - 469
Target Start/End: Original strand, 50600145 - 50600209
Alignment:
Q  405 agactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttattt 469  Q
    ||||||||||||| ||||||| ||||| ||| |||||||||| |  || ||||||||||||||||    
T  50600145 agactgtttggaagaacttataaaaacaactcatgacatgtccacgagctgttttcagcttattt 50600209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 400 - 467
Target Start/End: Original strand, 11039301 - 11039368
Alignment:
Q  400 ttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttat 467  Q
    ||||||||||||||| || | |||||| ||||   | |||||||||| ||||||||||||||||||||    
T  11039301 ttgtgagactgtttgaaagagcttatggaaacatattatgacatgtccataagttgttttcagcttat 11039368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 438 - 469
Target Start/End: Original strand, 16990161 - 16990192
Alignment:
Q  438 tgacatgtctataagttgttttcagcttattt 469  Q
    ||||||||||||||||||||||||||||||||    
T  16990161 tgacatgtctataagttgttttcagcttattt 16990192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 396 - 471
Target Start/End: Complemental strand, 26542649 - 26542574
Alignment:
Q  396 gtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    |||||||| ||||||||||||| | ||||   |||| ||| |||| |||||||||| ||||||||| |||||||||    
T  26542649 gtacttgtaagactgtttggaagagcttactgaaacaacttatgatatgtctataacttgttttcaacttatttcc 26542574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 400 - 471
Target Start/End: Original strand, 27290863 - 27290934
Alignment:
Q  400 ttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    ||||||| |||||| ||| | |||||||||||  || |||||||| | ||||| ||||||||||||||||||    
T  27290863 ttgtgaggctgtttcgaagagcttatgaaaacagcttatgacatgcccataagctgttttcagcttatttcc 27290934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 428 - 471
Target Start/End: Complemental strand, 36200176 - 36200133
Alignment:
Q  428 aaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    |||| ||| |||||||||| ||||||||||||||||||||||||    
T  36200176 aaacaacttatgacatgtccataagttgttttcagcttatttcc 36200133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 400 - 471
Target Start/End: Original strand, 40122715 - 40122786
Alignment:
Q  400 ttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    ||||| |||| ||||||||| ||||||||||    | ||||||| ||||||||||||||| |||||||||||    
T  40122715 ttgtgcgactatttggaatagcttatgaaaatagtttatgacatctctataagttgtttttagcttatttcc 40122786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 493 - 544
Target Start/End: Original strand, 40122827 - 40122878
Alignment:
Q  493 ttatgaaaacagtttaactttattttattgtttgttatggaaataccttata 544  Q
    ||||||||||||||| ||||||||||||  |||||||| |||||| ||||||    
T  40122827 ttatgaaaacagtttgactttattttatcttttgttattgaaatagcttata 40122878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 434 - 469
Target Start/End: Complemental strand, 41671384 - 41671349
Alignment:
Q  434 ctaatgacatgtctataagttgttttcagcttattt 469  Q
    |||||||||||||||||||||||||||| |||||||    
T  41671384 ctaatgacatgtctataagttgttttcaacttattt 41671349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 398 - 472
Target Start/End: Complemental strand, 11253611 - 11253537
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttccc 472  Q
    ||||| |||||||||||| | || |||| ||||| ||| ||||||| |||||||  |||||||||| ||||||||    
T  11253611 acttgagagactgtttggcagaatttataaaaacaacttatgacatatctataaactgttttcagcctatttccc 11253537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 357 - 451
Target Start/End: Original strand, 21872214 - 21872308
Alignment:
Q  357 tgtttggattgacttatttaaacatatctactgacaattgtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataa 451  Q
    |||||||||| |||||||| | | ||||||||||||   | |||||||||||||||||||| | ||| ||||||   || |||||||||| ||||    
T  21872214 tgtttggattaacttatttgatcttatctactgacataagcacttgtgagactgtttggaaaagcttttgaaaatagcttatgacatgtccataa 21872308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 540 - 574
Target Start/End: Original strand, 24235824 - 24235858
Alignment:
Q  540 ttataaacacttaattaagttatttatccaaacaa 574  Q
    ||||||||||||||||||||| |||||||||||||    
T  24235824 ttataaacacttaattaagttgtttatccaaacaa 24235858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 398 - 468
Target Start/End: Complemental strand, 45541681 - 45541611
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatt 468  Q
    |||||| ||||||||| ||| |||||||||||||  || |||||||||  ||||| ||||||||| |||||    
T  45541681 acttgtaagactgtttagaagaacttatgaaaacagcttatgacatgttcataagctgttttcaggttatt 45541611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 421 - 471
Target Start/End: Original strand, 48048965 - 48049015
Alignment:
Q  421 cttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    ||||||||| | ||| |||||||||| ||||| ||||||||||||||||||    
T  48048965 cttatgaaaccaactcatgacatgtccataagctgttttcagcttatttcc 48049015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 494 - 544
Target Start/End: Original strand, 49586992 - 49587042
Alignment:
Q  494 tatgaaaacagtttaactttattttattgtttgttatggaaataccttata 544  Q
    |||||||||||||| ||||||||||||  |||||||| |||||| ||||||    
T  49586992 tatgaaaacagtttgactttattttatcttttgttatagaaatagcttata 49587042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 494 - 543
Target Start/End: Original strand, 10101552 - 10101601
Alignment:
Q  494 tatgaaaacagtttaactttattttattgtttgttatggaaataccttat 543  Q
    |||||||||| ||||||||||||||||  |||||||| |||||| |||||    
T  10101552 tatgaaaacaatttaactttattttatcttttgttatagaaataacttat 10101601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 494 - 543
Target Start/End: Original strand, 10212477 - 10212526
Alignment:
Q  494 tatgaaaacagtttaactttattttattgtttgttatggaaataccttat 543  Q
    |||||||||| ||||||||||||||||  |||||||| |||||| |||||    
T  10212477 tatgaaaacaatttaactttattttatcttttgttatagaaataacttat 10212526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 494 - 543
Target Start/End: Original strand, 15304423 - 15304472
Alignment:
Q  494 tatgaaaacagtttaactttattttattgtttgttatggaaataccttat 543  Q
    |||||||||| ||||||||||||||||  |||||||| |||||| |||||    
T  15304423 tatgaaaacaatttaactttattttatcttttgttatagaaatagcttat 15304472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 357 - 470
Target Start/End: Original strand, 20210847 - 20210960
Alignment:
Q  357 tgtttggattgacttatttaaacatatctactgacaattgtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgt 456  Q
    |||||||||||| |||||| |   ||||||||||||     |||||||||||||||||  | | |||||| ||||   | |||| |||||||| ||||||    
T  20210847 tgtttggattgatttatttgaggttatctactgacataaccacttgtgagactgtttgagagatcttatgcaaacggattatgatatgtctatgagttgt 20210946  T
Q  457 tttcagcttatttc 470  Q
    ||||||||||||||    
T  20210947 tttcagcttatttc 20210960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 426
Target Start/End: Complemental strand, 25130034 - 25129960
Alignment:
Q  356 ttgtttggattgacttattta----aacatatctactgacaattgtacttgtgagactgtttggaataacttatg 426  Q
    ||||||||||||| |||||||    ||| ||||||||||||  ||||||||||||||||||| ||| | ||||||    
T  25130034 ttgtttggattgatttatttattcgaacttatctactgacatatgtacttgtgagactgtttagaagagcttatg 25129960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 437 - 470
Target Start/End: Original strand, 30923897 - 30923930
Alignment:
Q  437 atgacatgtctataagttgttttcagcttatttc 470  Q
    |||||||||||||||| |||||||||||||||||    
T  30923897 atgacatgtctataagctgttttcagcttatttc 30923930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 404 - 469
Target Start/End: Original strand, 54837000 - 54837065
Alignment:
Q  404 gagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttattt 469  Q
    |||||||||||||| || ||||||||||  || |||||||||  |||| |||||||| ||||||||    
T  54837000 gagactgtttggaagaatttatgaaaacagcttatgacatgttcataacttgttttccgcttattt 54837065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 355 - 469
Target Start/End: Original strand, 39178183 - 39178297
Alignment:
Q  355 cttgtttggattgacttatttaaacatatctactgacaattgtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagtt 454  Q
    ||||||||||||||| ||||||| ||||||||||||||     |||| ||| ||||||||| | |||||||||||||| || |||||| ||  ||||| |    
T  39178183 cttgtttggattgacgtatttaagcatatctactgacataaacacttttgacactgtttgggagaacttatgaaaaccgcttatgacacgttaataagat 39178282  T
Q  455 gttttcagcttattt 469  Q
    ||||||| |||||||    
T  39178283 gttttcaacttattt 39178297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 398 - 471
Target Start/End: Original strand, 50799990 - 50800063
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    |||||||||| ||||||| | |||| ||| |||| ||| |||||||||||||||| ||||||||||||||||||    
T  50799990 acttgtgagattgtttgggagaactaatgtaaacaacttatgacatgtctataagctgttttcagcttatttcc 50800063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 396 - 471
Target Start/End: Original strand, 27123310 - 27123385
Alignment:
Q  396 gtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    |||||||||||||||||||  | | |||||| |||| ||| ||||||||||| ||||||||||||| |||||||||    
T  27123310 gtacttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttcc 27123385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 398 - 471
Target Start/End: Original strand, 3176064 - 3176137
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    |||||||| ||||||| | | | |||||||||||  || ||| |||||||||||||||||||||||||||||||    
T  3176064 acttgtgaaactgtttaggagagcttatgaaaacatcttatgtcatgtctataagttgttttcagcttatttcc 3176137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 400 - 470
Target Start/End: Complemental strand, 23819197 - 23819127
Alignment:
Q  400 ttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttc 470  Q
    |||||||||||||||||| |  ||| ||||||  || |||||||||| |||||||||||||| ||||||||    
T  23819197 ttgtgagactgtttggaagagtttaagaaaacagcttatgacatgtccataagttgttttcatcttatttc 23819127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 398 - 471
Target Start/End: Complemental strand, 1137822 - 1137749
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    |||||||| ||||||| | | |||||||||||||  || |||||||||  ||||||||||||||| ||||||||    
T  1137822 acttgtgacactgtttaggagaacttatgaaaacatcttatgacatgttcataagttgttttcagtttatttcc 1137749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 398 - 470
Target Start/End: Original strand, 9843213 - 9843285
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttc 470  Q
    ||||||||||||||||  || |  ||| |||||| |||||| |||| || |||||||||||||||||||||||    
T  9843213 acttgtgagactgtttcaaagagattaagaaaacaactaatcacatatccataagttgttttcagcttatttc 9843285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 469
Target Start/End: Complemental strand, 4691958 - 4691887
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttattt 469  Q
    |||||||||||| ||||  | |||||||| |||| ||| |||||||| | ||| ||||||||||||||||||    
T  4691958 acttgtgagactatttgagaaaacttatggaaacaacttatgacatgcccatatgttgttttcagcttattt 4691887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 407 - 469
Target Start/End: Original strand, 6978931 - 6978993
Alignment:
Q  407 actgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttattt 469  Q
    ||||||||| | |||||||  |||  ||| |||||||||||||||| ||||||||||||||||    
T  6978931 actgtttggcagaacttattgaaataacttatgacatgtctataagctgttttcagcttattt 6978993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 357 - 391
Target Start/End: Original strand, 41603132 - 41603166
Alignment:
Q  357 tgtttggattgacttatttaaacatatctactgac 391  Q
    ||||||||||||||||||||||| |||||||||||    
T  41603132 tgtttggattgacttatttaaacttatctactgac 41603166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 401 - 467
Target Start/End: Original strand, 47118928 - 47118994
Alignment:
Q  401 tgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttat 467  Q
    |||||||||| |||||| ||||||||||||| ||| |||||||   |||  ||||||||||||||||    
T  47118928 tgtgagactgcttggaagaacttatgaaaacaactcatgacattgttattggttgttttcagcttat 47118994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 55547043 - 55547077
Alignment:
Q  437 atgacatgtctataagttgttttcagcttatttcc 471  Q
    ||||||||||||||||||||||| |||||||||||    
T  55547043 atgacatgtctataagttgtttttagcttatttcc 55547077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 422 - 467
Target Start/End: Complemental strand, 2841712 - 2841667
Alignment:
Q  422 ttatgaaaaccactaatgacatgtctataagttgttttcagcttat 467  Q
    |||||||| | ||| |||||||||| ||||||||||||||||||||    
T  2841712 ttatgaaagcaacttatgacatgtcaataagttgttttcagcttat 2841667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 398 - 471
Target Start/End: Original strand, 20936189 - 20936262
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    |||||||| ||||||| | | ||||||||||||| ||| |||| ||||  ||||| |||||||| |||||||||    
T  20936189 acttgtgacactgtttcgtaaaacttatgaaaacaacttatgatatgttcataagctgttttcaccttatttcc 20936262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 398 - 471
Target Start/End: Complemental strand, 28232655 - 28232582
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    ||||| |||||||||||||| | ||| || |||| ||| ||||| | | ||||||||||||||| |||||||||    
T  28232655 acttgcgagactgtttggaagagcttgtggaaacaacttatgacttatttataagttgttttcatcttatttcc 28232582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 395 - 469
Target Start/End: Complemental strand, 38578641 - 38578567
Alignment:
Q  395 tgtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttattt 469  Q
    |||||||||||||||||||||| |||||||||||||| ||| || |||| |  |||||||||||| |||||||||    
T  38578641 tgtacttgtgagactgtttggactaacttatgaaaacaacttataacatattcataagttgttttgagcttattt 38578567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 398 - 469
Target Start/End: Original strand, 31517700 - 31517771
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttattt 469  Q
    |||||||||||||||||| | ||||||| ||||| ||| |||||||||  ||||| ||||||||||||||||    
T  31517700 acttgtgagactgtttgggagaacttatcaaaacaactcatgacatgttcataagctgttttcagcttattt 31517771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 381 - 470
Target Start/End: Complemental strand, 15581381 - 15581292
Alignment:
Q  381 tatctactgacaattgtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttc 470  Q
    ||||||||||||   | |||||||||| ||||||||| | || ||| |||| ||| |||||||||||||||| |||||||||| ||||||    
T  15581381 tatctactgacataagcacttgtgagattgtttggaagagctaatggaaacaacttatgacatgtctataagctgttttcagcctatttc 15581292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 437 - 471
Target Start/End: Complemental strand, 4549301 - 4549267
Alignment:
Q  437 atgacatgtctataagttgttttcagcttatttcc 471  Q
    |||||||||||||||||||||||||||||||||||    
T  4549301 atgacatgtctataagttgttttcagcttatttcc 4549267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 355 - 469
Target Start/End: Complemental strand, 4868552 - 4868439
Alignment:
Q  355 cttgtttggattgacttatttaaacatatctactgacaattgtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagtt 454  Q
    |||||||||||||| |||||| ||  |||||| |||||   | |||||||||||||||||  | |  |||||||| | ||| |||||||||| |||||||    
T  4868552 cttgtttggattgatttatttgaatttatctattgacataggcacttgtgagactgtttgagagagtttatgaaa-caacttatgacatgtcaataagtt 4868454  T
Q  455 gttttcagcttattt 469  Q
    ||||||| |||||||    
T  4868453 gttttcaacttattt 4868439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 428 - 470
Target Start/End: Complemental strand, 30371228 - 30371186
Alignment:
Q  428 aaaccactaatgacatgtctataagttgttttcagcttatttc 470  Q
    |||| |||||||||||||| |||||||||||||||||||||||    
T  30371228 aaacaactaatgacatgtccataagttgttttcagcttatttc 30371186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 357 - 471
Target Start/End: Original strand, 33723301 - 33723415
Alignment:
Q  357 tgtttggattgacttatttaaacatatctactgacaattgtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgt 456  Q
    ||||||||||||||||||| ||| ||||||||  ||     ||||||||||||| |||| | |||||||| ||||  || |||||||||  || || |||    
T  33723301 tgtttggattgacttatttgaacttatctactaccataaacacttgtgagactgcttgggaaaacttatggaaacagctcatgacatgttcatgagatgt 33723400  T
Q  457 tttcagcttatttcc 471  Q
    |||||||||||||||    
T  33723401 tttcagcttatttcc 33723415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 398 - 460
Target Start/End: Complemental strand, 42336725 - 42336663
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttc 460  Q
    ||||||| |||||||||  ||||||||||||||| ||| |||||||||| | |||||||||||    
T  42336725 acttgtgcgactgtttgagataacttatgaaaacaacttatgacatgtccaaaagttgttttc 42336663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 398 - 471
Target Start/End: Original strand, 4768789 - 4768862
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    ||||||||||| |||||| | |||||| ||||||  || | |||||||| |||| |||||||||||||||||||    
T  4768789 acttgtgagacagtttgggaaaacttacgaaaacagcttacgacatgtccataacttgttttcagcttatttcc 4768862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 360 - 469
Target Start/End: Original strand, 10199330 - 10199439
Alignment:
Q  360 ttggattgacttatttaaacatatctactgacaattgtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgtttt 459  Q
    |||||||||||||||| | | |||||||| |||   | |||||||| ||| ||||| | |||| |||||||   || |||||||||  ||||||||||||    
T  10199330 ttggattgacttatttgagcttatctactaacataagcacttgtgacactatttgggagaactcatgaaaatagcttatgacatgttcataagttgtttt 10199429  T
Q  460 cagcttattt 469  Q
    ||||||||||    
T  10199430 cagcttattt 10199439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 398 - 471
Target Start/End: Complemental strand, 17420313 - 17420240
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    |||||| ||||||||| ||| | ||||||||||| ||| || ||||||| |||| ||||||||| |||||||||    
T  17420313 acttgttagactgttttgaagagcttatgaaaacaacttattacatgtccataaattgttttcaacttatttcc 17420240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 357 - 414
Target Start/End: Original strand, 24460320 - 24460377
Alignment:
Q  357 tgtttggattgacttatttaaacatatctactgacaattgtacttgtgagactgtttg 414  Q
    ||||||||||||||||||| ||| ||||||||||||   | |||||||||||||||||    
T  24460320 tgtttggattgacttatttgaacttatctactgacatgagcacttgtgagactgtttg 24460377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 397 - 470
Target Start/End: Original strand, 29929580 - 29929653
Alignment:
Q  397 tacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttc 470  Q
    ||||||||| ||||||| | | | ||||||||||| ||| |||||||||  |||||||||||||||| ||||||    
T  29929580 tacttgtgatactgttttggagagcttatgaaaacaactcatgacatgtgcataagttgttttcagcatatttc 29929653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 400 - 465
Target Start/End: Complemental strand, 38001704 - 38001639
Alignment:
Q  400 ttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagctt 465  Q
    |||||||||||||||| | |||||||||||||  || ||||| |||  ||||||||||||||||||    
T  38001704 ttgtgagactgtttgggagaacttatgaaaacagcttatgacctgttcataagttgttttcagctt 38001639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 358 - 469
Target Start/End: Complemental strand, 6659830 - 6659719
Alignment:
Q  358 gtttggattgacttatttaaacatatctactgacaattgtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgtt 457  Q
    |||||||||||||||||| | | ||||||||  ||   | |||||||||||| ||||| ||| ||||||| ||| ||   || |||||| ||||||||||    
T  6659830 gtttggattgacttattttagcttatctactagcataagcacttgtgagactatttgggatagcttatgataacaacatttggcatgtccataagttgtt 6659731  T
Q  458 ttcagcttattt 469  Q
    ||||||| ||||    
T  6659730 ttcagctcattt 6659719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 422 - 469
Target Start/End: Complemental strand, 29635433 - 29635386
Alignment:
Q  422 ttatgaaaaccactaatgacatgtctataagttgttttcagcttattt 469  Q
    |||||||||| | | ||||||||| |||||||||||||||||||||||    
T  29635433 ttatgaaaacaagttatgacatgtttataagttgttttcagcttattt 29635386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 469
Target Start/End: Original strand, 37593644 - 37593715
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttattt 469  Q
    |||||| ||||||||||| | |||| ||||| || ||| |||||||||  ||||| ||||||||||||||||    
T  37593644 acttgttagactgtttgggaaaactaatgaacacaacttatgacatgttcataagctgttttcagcttattt 37593715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 465
Target Start/End: Original strand, 38170650 - 38170717
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagctt 465  Q
    ||||||||||||| |||| | | |||||||||||  || |||||||||  ||||||||||||||||||    
T  38170650 acttgtgagactgcttgggagagcttatgaaaacagcttatgacatgttcataagttgttttcagctt 38170717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 396 - 467
Target Start/End: Original strand, 43954004 - 43954074
Alignment:
Q  396 gtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttat 467  Q
    |||||||||| ||||||||  ||| |||||| |||||||| ||||  |||| ||||||||||||||||||||    
T  43954004 gtacttgtgaaactgtttgagatagcttatggaaaccacttatgatttgtc-ataagttgttttcagcttat 43954074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 356 - 431
Target Start/End: Original strand, 50644173 - 50644247
Alignment:
Q  356 ttgtttggattgacttatttaaacatatctactgacaattgtacttgtgagactgtttggaataacttatgaaaac 431  Q
    |||||||||||||||||||| | | |||||||| |||  |||  |||||||||||||||| | |||||||||||||    
T  50644173 ttgtttggattgacttatttgagcttatctactaacatatgtt-ttgtgagactgtttgggagaacttatgaaaac 50644247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 428 - 470
Target Start/End: Complemental strand, 3223747 - 3223705
Alignment:
Q  428 aaaccactaatgacatgtctataagttgttttcagcttatttc 470  Q
    |||| ||| ||||||||| ||||||||||||||||||||||||    
T  3223747 aaacaacttatgacatgtttataagttgttttcagcttatttc 3223705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 12477286 - 12477320
Alignment:
Q  437 atgacatgtctataagttgttttcagcttatttcc 471  Q
    |||||||||| ||||||||||||||||||||||||    
T  12477286 atgacatgtccataagttgttttcagcttatttcc 12477320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 471
Target Start/End: Complemental strand, 15579585 - 15579519
Alignment:
Q  405 agactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    ||||||||||| | | ||| || |||| ||| |||||||||| |||||||||| |||||||||||||    
T  15579585 agactgtttgggagagcttgtggaaacaacttatgacatgtccataagttgttctcagcttatttcc 15579519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 359 - 465
Target Start/End: Original strand, 18327067 - 18327173
Alignment:
Q  359 tttggattgacttatttaaacatatctactgacaattgtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttt 458  Q
    ||||||||| ||||||| | | ||||||||| ||   | |||| ||| ||| ||||||| ||||||||||||| ||| ||||||||  |||||||  |||    
T  18327067 tttggattggcttatttgagcttatctactgtcataagcacttttgacactatttggaagaacttatgaaaacaacttatgacatggttataagtaattt 18327166  T
Q  459 tcagctt 465  Q
    |||||||    
T  18327167 tcagctt 18327173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 397 - 471
Target Start/End: Original strand, 33108581 - 33108655
Alignment:
Q  397 tacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    ||||| |||||| || | ||| ||||||||||||| ||| ||| |||| | |||||||||||||| |||||||||    
T  33108581 tacttatgagaccgtatagaagaacttatgaaaacaactcatgccatgaccataagttgttttcaacttatttcc 33108655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 33722400 - 33722434
Alignment:
Q  437 atgacatgtctataagttgttttcagcttatttcc 471  Q
    ||||||| |||||||||||||||||||||||||||    
T  33722400 atgacatatctataagttgttttcagcttatttcc 33722434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 494 - 560
Target Start/End: Original strand, 33723458 - 33723524
Alignment:
Q  494 tatgaaaacagtttaactttattttattgtttgttatggaaataccttataaacacttaattaagtt 560  Q
    |||||||||| ||| ||||||| |||||| || |||| |||||| |||||||||  |||||||||||    
T  33723458 tatgaaaacaatttgactttatgttattgattcttatagaaatagcttataaacgtttaattaagtt 33723524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 491 - 544
Target Start/End: Complemental strand, 6976945 - 6976892
Alignment:
Q  491 gcttatgaaaacagtttaactttattttattgtttgttatggaaataccttata 544  Q
    ||||||||||| ||||||||||||| ||||  |||||||| |||||| ||||||    
T  6976945 gcttatgaaaatagtttaactttatcttatcttttgttatagaaatatcttata 6976892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 398 - 467
Target Start/End: Original strand, 32515401 - 32515470
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttat 467  Q
    |||||||||||||||||| | | |||||| ||||  |  |||||||||| |||||||||||||| |||||    
T  32515401 acttgtgagactgtttgggagagcttatggaaacagcgtatgacatgtcaataagttgttttcaacttat 32515470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 382 - 471
Target Start/End: Complemental strand, 27702 - 27613
Alignment:
Q  382 atctactgacaattgtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    |||||||||||  ||||||| ||||||||||||| | | |||||| |||   || |||||||| ||||||||||||||||||||||||||    
T  27702 atctactgacatatgtacttctgagactgtttgggagagcttatggaaatagcttatgacatggctataagttgttttcagcttatttcc 27613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 400 - 469
Target Start/End: Complemental strand, 7674756 - 7674687
Alignment:
Q  400 ttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttattt 469  Q
    ||||||||||| |||||| |||||||| |||| ||| ||||||||| |||||| ||||||||||||||||    
T  7674756 ttgtgagactgcttggaagaacttatggaaacaacttatgacatgtttataaggtgttttcagcttattt 7674687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 398 - 471
Target Start/End: Complemental strand, 10907488 - 10907415
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    |||||||||||||||||||| | ||||||||||| ||| ||| |||||| ||||| ||||||| ||||||||||    
T  10907488 acttgtgagactgtttggaagagcttatgaaaacaacttatgtcatgtcaataagctgttttcggcttatttcc 10907415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 357 - 471
Target Start/End: Original strand, 499650 - 499764
Alignment:
Q  357 tgtttggattgacttatttaaacatatctactgacaattgtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgt 456  Q
    ||||||||||||||||||| | | || |||||||||   | || ||| || |||||||| | |||||||||||||  || |||||||||  | |||||||    
T  499650 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatgaaaacagcttatgacatgttaacaagttgt 499749  T
Q  457 tttcagcttatttcc 471  Q
    |||||||||||||||    
T  499750 tttcagcttatttcc 499764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 357 - 469
Target Start/End: Original strand, 12459920 - 12460032
Alignment:
Q  357 tgtttggattgacttatttaaacatatctactgacaattgtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgt 456  Q
    |||||||||||||||||||   | ||||| ||||||   | || ||||||||||||||| | ||| ||||||||| ||| |||||||||  ||| |||||    
T  12459920 tgtttggattgacttatttcggcttatctgctgacataagcacctgtgagactgtttgggagaacctatgaaaacaacttatgacatgttcatatgttgt 12460019  T
Q  457 tttcagcttattt 469  Q
    |||  ||||||||    
T  12460020 ttttggcttattt 12460032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 398 - 470
Target Start/End: Original strand, 16457573 - 16457645
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttc 470  Q
    |||||||||||||||||||| | | |||| |||| | |  ||||||||  |||||||||||||||||||||||    
T  16457573 acttgtgagactgtttggaagagcatatggaaacaaattgtgacatgttcataagttgttttcagcttatttc 16457645  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 421 - 465
Target Start/End: Complemental strand, 18700471 - 18700427
Alignment:
Q  421 cttatgaaaaccactaatgacatgtctataagttgttttcagctt 465  Q
    |||||| |||| ||| |||||||||||||||||||||||||||||    
T  18700471 cttatggaaacaacttatgacatgtctataagttgttttcagctt 18700427  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 440 - 471
Target Start/End: Original strand, 18704038 - 18704069
Alignment:
Q  440 acatgtctataagttgttttcagcttatttcc 471  Q
    ||||||||||||||||||||||||||||||||    
T  18704038 acatgtctataagttgttttcagcttatttcc 18704069  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 437 - 471
Target Start/End: Complemental strand, 35963312 - 35963278
Alignment:
Q  437 atgacatgtctataagttgttttcagcttatttcc 471  Q
    |||||||||| ||||||||||||||||||||||||    
T  35963312 atgacatgtccataagttgttttcagcttatttcc 35963278  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 496 - 537
Target Start/End: Complemental strand, 985625 - 985584
Alignment:
Q  496 tgaaaacagtttaactttattttattgtttgttatggaaata 537  Q
    |||||||||||| ||||||||||||  |||||||||||||||    
T  985625 tgaaaacagtttgactttattttatcttttgttatggaaata 985584  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 357 - 390
Target Start/End: Original strand, 3280655 - 3280688
Alignment:
Q  357 tgtttggattgacttatttaaacatatctactga 390  Q
    ||||||||||||||||||||||| ||||||||||    
T  3280655 tgtttggattgacttatttaaacttatctactga 3280688  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 398 - 466
Target Start/End: Complemental strand, 7907992 - 7907923
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccac-taatgacatgtctataagttgttttcagctta 466  Q
    |||| ||||||||||||||| ||||||||||||| || || ||| || |  |||||||||||||||||||    
T  7907992 acttatgagactgtttggaagaacttatgaaaacaacgtactgaaatattcataagttgttttcagctta 7907923  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 364 - 469
Target Start/End: Original strand, 10125644 - 10125749
Alignment:
Q  364 attgacttatttaaacatatctactgacaattgtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagc 463  Q
    |||| ||||||||| | ||||||||||||   | |||||||| | ||| ||  | |||||||| |||| ||| |||||||||  ||||| ||||||||||    
T  10125644 attggcttatttaagcttatctactgacatgagcacttgtgacattgtctgagagaacttatgtaaacaacttatgacatgttgataaggtgttttcagc 10125743  T
Q  464 ttattt 469  Q
    ||||||    
T  10125744 ttattt 10125749  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 428 - 469
Target Start/End: Original strand, 10272421 - 10272462
Alignment:
Q  428 aaaccactaatgacatgtctataagttgttttcagcttattt 469  Q
    |||| ||| ||||||||||| |||||||||||||||||||||    
T  10272421 aaacaacttatgacatgtctgtaagttgttttcagcttattt 10272462  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 398 - 471
Target Start/End: Complemental strand, 10391452 - 10391379
Alignment:
Q  398 acttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttatttcc 471  Q
    |||||||||| ||||||||| |  |||| |||||   | ||||||||||||| ||||||||||| |||||||||    
T  10391452 acttgtgagattgtttggaagagtttataaaaacactttatgacatgtctattagttgttttcaacttatttcc 10391379  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 437 - 470
Target Start/End: Original strand, 17369438 - 17369471
Alignment:
Q  437 atgacatgtctataagttgttttcagcttatttc 470  Q
    |||||||||||||||||||||||||| |||||||    
T  17369438 atgacatgtctataagttgttttcagattatttc 17369471  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 499 - 573
Target Start/End: Original strand, 21782650 - 21782728
Alignment:
Q  499 aaacagtttaactttattttattgtttgttatggaaatacctta----taaacacttaattaagttatttatccaaaca 573  Q
    ||||| ||| |||||||||||   |||||||| |||||| ||||    |||||||||||||||||| ||||||||||||    
T  21782650 aaacaatttgactttattttagcttttgttatagaaatagcttaaacataaacacttaattaagttgtttatccaaaca 21782728  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 370 - 471
Target Start/End: Original strand, 37611147 - 37611248
Alignment:
Q  370 ttatttaaacatatctactgacaattgtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttattt 469  Q
    |||||| ||| ||||||||| ||   |||||||||||| ||||||  | | ||||||||||| |||  ||||||||  ||||| ||||||||| ||||||    
T  37611147 ttatttgaacttatctactggcacaagtacttgtgagattgtttgagagagcttatgaaaacaacttgtgacatgttcataagctgttttcaggttattt 37611246  T
Q  470 cc 471  Q
    ||    
T  37611247 cc 37611248  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 370 - 471
Target Start/End: Original strand, 37787877 - 37787978
Alignment:
Q  370 ttatttaaacatatctactgacaattgtacttgtgagactgtttggaataacttatgaaaaccactaatgacatgtctataagttgttttcagcttattt 469  Q
    |||||| ||| ||||||||| ||   |||||||||||| ||||||  | | ||||||||||| |||  ||||||||  ||||| ||||||||| ||||||    
T  37787877 ttatttgaacttatctactggcacaagtacttgtgagattgtttgagagagcttatgaaaacaacttgtgacatgttcataagctgttttcaggttattt 37787976  T
Q  470 cc 471  Q
    ||    
T  37787977 cc 37787978  T

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Target: scaffold0153 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 6493 - 6527
Alignment:
Q  437 atgacatgtctataagttgttttcagcttatttcc 471  Q
    |||||||||||||||||||||||||| ||||||||    
T  6493 atgacatgtctataagttgttttcagtttatttcc 6527  T

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Target: scaffold0153; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 13513 - 13547
Alignment:
Q  437 atgacatgtctataagttgttttcagcttatttcc 471  Q
    |||||||||||||||||||||||||| ||||||||    
T  13513 atgacatgtctataagttgttttcagtttatttcc 13547  T

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Target: scaffold0147 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 466
Target Start/End: Original strand, 12687 - 12732
Alignment:
Q  421 cttatgaaaaccactaatgacatgtctataagttgttttcagctta 466  Q
    |||||| |||| ||| |||||||||| |||||||||||||||||||    
T  12687 cttatggaaacaacttatgacatgtccataagttgttttcagctta 12732  T

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