View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5458-Insertion-3 (Length: 666)

Name: NF5458-Insertion-3
Description: NF5458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5458-Insertion-3
NF5458-Insertion-3
[»] chr6 (13 HSPs)
chr6 (7-666)||(897031-897690)
chr6 (7-500)||(1236751-1237254)
chr6 (7-500)||(1182508-1183004)
chr6 (7-394)||(1193545-1193937)
chr6 (592-666)||(1237479-1237553)
chr6 (500-574)||(1182389-1182464)
chr6 (514-572)||(896558-896617)
chr6 (591-665)||(1182253-1182330)
chr6 (593-659)||(1193209-1193275)
chr6 (591-666)||(793878-793954)
chr6 (444-500)||(1193486-1193542)
chr6 (430-470)||(1183393-1183433)
chr6 (530-575)||(1237368-1237414)
[»] scaffold0302 (2 HSPs)
scaffold0302 (7-397)||(19797-20183)
scaffold0302 (444-500)||(19741-19797)
[»] chr7 (2 HSPs)
chr7 (102-394)||(20256914-20257186)
chr7 (457-500)||(20257183-20257226)
[»] chr4 (5 HSPs)
chr4 (444-500)||(12857204-12857260)
chr4 (295-397)||(12857260-12857361)
chr4 (593-659)||(10203797-10203863)
chr4 (424-459)||(10203960-10203995)
chr4 (424-477)||(12857475-12857529)


Alignment Details
Target: chr6 (Bit Score: 648; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 648; E-Value: 0
Query Start/End: Original strand, 7 - 666
Target Start/End: Complemental strand, 897690 - 897031
Alignment:
Q  7 acctttcaaccaatattttctgttgaaaggaaaactaaactgcaaaaacaattgtcttaaactcagatttatttgagtcttttaaaccaaagctacatct 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  897690 acctttcaaccaatattttctgttgaaaggaaaactaaactgcaaaaacaattgtcttaaactcagatttatttgagtcttttaaaccaaagctacatct 897591  T
Q  107 ctcacaatgaattcctcagcacaccacctatacgtgcagctcccggctttcctttcgatgatccatccacattccatttccaaacattttggggaggggg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  897590 ctcacaatgaattcctcagcacaccacctatacgtgcagctcccggcttccctttcgatgatctatccacattccatttccaaacattttggggaggggg 897491  T
Q  207 acaccgtactactgacaatctactgccaaacaatctctttccatgttttaatcacttgaattttatacaaatggaccacgtgatacacacacatgttcta 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  897490 acaccgtactactgacaatctactgccaaacaatctctttccatgttttaatcacttgaattttatacaaatggaccacgtgatacacacacatgttcta 897391  T
Q  307 cgaagggtttgagacttgagaaaccaaaccacccaatccccaacaccacatcacattggtaacaagctgccatgacaacttctgataaatcctattccct 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  897390 cgaagggtttgagacttgagaaaccaaaccacccaatccccaacaccacatcacattggtaacaagctgccatgacaacttctgataaatcctattcccc 897291  T
Q  407 cctcttacgaaaacgctccaaacaattgaaagaaaaacactcatcacctaataacacaccagagcactaccaataacaaatcttaggcctaaaatcaagg 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  897290 cctcttacgaaaacgctccaaacaattgaaagaaaaacactcatcacctaataacacaccagagcactaccaataacaaatcttaggcctaaaatcaagg 897191  T
Q  507 actccagcatctcatccaaaaccccatttgtactcaatatgcaataacatatcctaagtattcaatatgctcactagagagcacttatcacattttctta 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  897190 actccagcatctcatccaaaaccccatttgtactcaatatgcaataacatatcctaagtattcaatatgctcactagagagcacttatcacattttctta 897091  T
Q  607 accacatactcattagagagcaagtaaaaaatttctaagaaaccatatacatccacaatg 666  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  897090 accacatactcattagagagcaagtaaaaaatttctaagaaaccatatacatccacaatg 897031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 7 - 500
Target Start/End: Original strand, 1236751 - 1237254
Alignment:
Q  7 acctttcaaccaatattttctgttgaaaggaaaactaaactgcaaaaacaattgtcttaaactcagatttatttgagtcttttaaaccaaa--------- 97  Q
    |||||||||||||||||||||| |||||||| ||||| |||||||||||||||| |||||||||||||| ||||||| ||||||||||||              
T  1236751 acctttcaaccaatattttctgctgaaaggacaactagactgcaaaaacaattgccttaaactcagattcatttgagccttttaaaccaattgatgttgc 1236850  T
Q  98 --------gctacatctctcacaatgaattcctcagcacaccacctatacgtgcagctcccggctttcctttcgatgatccatccacattccatttccaa 189  Q
            ||| |||||| ||||||||||||||||||| |||||||||||| |||||||||||||| ||||| || |||||| ||||||||||||| |||    
T  1236851 aaacatcggcttcatctcacacaatgaattcctcagcagaccacctatacgcgcagctcccggcttcccttttgacgatccaaccacattccattttcaa 1236950  T
Q  190 acattttggggagggggacaccgtactactgacaatctactgccaaacaatctctttccatgttttaatcacttgaattttatacaaatggaccacgtga 289  Q
    |||||||| |||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  1236951 acattttgtggagggggacaccgtactgctgacaatctactacc-aacaatctctttccatgttttaatctcttgaattttatacaaatggaccgcgtga 1237049  T
Q  290 t--acacacacatgttctacgaagggtttgagacttgagaaaccaaaccacccaatccccaacaccacatcacattggtaacaagctgccatgacaactt 387  Q
    |  |||||||||  ||||| |||||||| || |||||||     | |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1237050 tacacacacacacattctatgaagggttggacacttgag-----agaccacccaatccccaacaccacatcacattggtaacaagc-gccatgacaactt 1237143  T
Q  388 ctgataaatcctattccctcctcttacgaaaacgctccaaacaattgaaagaaaaacactcatcacctaataacacaccagagcactaccaataacaaat 487  Q
    ||||||||||||||  || ||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1237144 ctgataaatcctat--ccccctcttacgaaaacgctccaaaagattgaaagaaaaacactcatcacctaataaaacaccagagcactaccaataacaaat 1237241  T
Q  488 cttaggcctaaaa 500  Q
    ||||||| |||||    
T  1237242 cttaggcataaaa 1237254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 7 - 500
Target Start/End: Complemental strand, 1183004 - 1182508
Alignment:
Q  7 acctttcaaccaatattttctgttgaaaggaaaactaaactgcaaaaacaattgtcttaaactcagatttatttgagtcttttaaaccaaa--------- 97  Q
    ||||||||||||||||||||| |||||||||   ||| |||||||||| ||||| ||||||||||||||  |||||||||||||||||||              
T  1183004 acctttcaaccaatattttcttttgaaaggaccgctagactgcaaaaagaattgccttaaactcagattcgtttgagtcttttaaaccaattgatgttac 1182905  T
Q  98 --------gctacatctctcacaatgaattcctcagcacacca--------cctatacgtgcagctcccggctttcctttcgatgatccatccacattcc 181  Q
            ||| |||||||||||||||||||||||||||||          |||||||| |||||||||||||| |||||||| |||| |||||||||||    
T  1182904 aaacatcggcttcatctctcacaatgaattcctcagcacacatataaaattcctatacgcgcagctcccggcttccctttcgacgatctatccacattcc 1182805  T
Q  182 atttccaaacattttggggagggggacaccgtactactgacaatctactgccaaacaatctctttccatgttttaatcacttgaattttatacaaat--- 278  Q
    ||||| |||||||||| ||||||||||||| ||||              ||||| |||| | |||||||||||||||| ||||||||||||||||||       
T  1182804 atttcaaaacattttgtggagggggacaccatact--------------gccaa-caatatttttccatgttttaatctcttgaattttatacaaatata 1182720  T
Q  279 --ggaccacgtgatacacacacatgttctacgaagggtttgagacttgagaaaccaaaccacccaatccccaacaccacatcacattggtaacaagctgc 376  Q
      ||||| |||||||||||||||| ||||| |||||||||||||||||||| ||||  | ||| |||  |||||||||||||||||||| ||            
T  1182719 ttggaccgcgtgatacacacacatattctatgaagggtttgagacttgagagaccac-ctacctaatttccaacaccacatcacattggcaa-------- 1182629  T
Q  377 catgacaacttctgataaatcctattccctcctcttacgaaaacgctccaaacaattgaaagaaaaacactcatcacctaataacacaccagagcactac 476  Q
      ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||     
T  1182628 --tgacaacttctgataaatcctattccc-cctcttacgaaaacgctccaaacaattgaaagaaaaacactcattacctaataacacaccagaacactaa 1182532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 7 - 394
Target Start/End: Complemental strand, 1193937 - 1193545
Alignment:
Q  7 acctttcaaccaatattttctgttgaaaggaaaactaaactgcaaaaacaattgtcttaaactcagatttatttgagtcttttaaaccaaa--------- 97  Q
    ||||||||||||||||||||||||||| ||| || ||||||||||||||||| | |||||| | ||||| |||| |||||||||| ||||              
T  1193937 acctttcaaccaatattttctgttgaatggacaattaaactgcaaaaacaatagccttaaattaagattcattttagtcttttaacccaattgatgttgc 1193838  T
Q  98 --------gctacatctctcacaatgaattcctcagcacaccacctatacgtgcagctcccggctttcctttcgatgatccatccacattccatttccaa 189  Q
            ||| |||||| ||||| |||||||||||||||| ||| ||||  ||| ||||| |||| ||||| || ||||||||||||||||||||| ||    
T  1193837 aaacatcggcttcatctcacacaaagaattcctcagcacacaaccaatacacgcaactcccagcttcccttttgacgatccatccacattccatttcaaa 1193738  T
Q  190 acattttggggagggggacaccgtactactgacaatctactgccaaacaatctctttccatgttttaatcacttgaattttatacaaa---tggaccacg 286  Q
    |||||||| |||||||||||||               ||||||| |||||||| |||||||||||||||| |||||||||||||||||   |||||| ||    
T  1193737 acattttgtggagggggacacc--------------atactgcc-aacaatctttttccatgttttaatctcttgaattttatacaaatattggaccgcg 1193653  T
Q  287 tgatacacacacat----gttctacgaagggtttgagacttgagaaaccaaaccacccaatccccaacaccacatcacattggtaacaagctgccatgac 382  Q
    ||||||||||||||     ||| | |||||||||||||||  ||| ||| | | ||| ||||||||||||||||||||||||| |||||   ||||||||    
T  1193652 tgatacacacacatattcattcaatgaagggtttgagactctagagacc-acctacctaatccccaacaccacatcacattggaaacaa---gccatgac 1193557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 592 - 666
Target Start/End: Original strand, 1237479 - 1237553
Alignment:
Q  592 tatcacattttcttaaccacatactcattagagagcaagtaaaaaatttctaagaaaccatatacatccacaatg 666  Q
    ||||||||||||||||||||||||||||||||| |||||||||| | |||| |||||||||||||||||||||||    
T  1237479 tatcacattttcttaaccacatactcattagagtgcaagtaaaataattcttagaaaccatatacatccacaatg 1237553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 500 - 574
Target Start/End: Complemental strand, 1182464 - 1182389
Alignment:
Q  500 atcaaggactccagcatctcatccaaaaccccatttgtactcaatatgcaataac-atatcctaagtattcaatat 574  Q
    |||||||||||||  |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1182464 atcaaggactccattatctgatccaaaaccccatttgtactcaatatgcaataacaatatcctaagtattcaatat 1182389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 514 - 572
Target Start/End: Complemental strand, 896617 - 896558
Alignment:
Q  514 catctcatccaaaaccccatttgtactcaatatgcaataac-atatcctaagtattcaat 572  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  896617 catctcatccaaaaccccatttgtactcaatatgcaataacaatatcctaagtattcaat 896558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 591 - 665
Target Start/End: Complemental strand, 1182330 - 1182253
Alignment:
Q  591 ttatcacattttcttaaccacatactcattag---agagcaagtaaaaaatttctaagaaaccatatacatccacaat 665  Q
    |||||||||||||||||||||||| |||||||   ||||||||||||||| |||| ||||||||||||||||||||||    
T  1182330 ttatcacattttcttaaccacatattcattagtagagagcaagtaaaaaaattcttagaaaccatatacatccacaat 1182253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 593 - 659
Target Start/End: Complemental strand, 1193275 - 1193209
Alignment:
Q  593 atcacattttcttaaccacatactcattagagagcaagtaaaaaatttctaagaaaccatatacatc 659  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| ||||    
T  1193275 atcacattttcttaaccacatactcattagagagcaagtaaaaaaattcttagaaatcatattcatc 1193209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 591 - 666
Target Start/End: Original strand, 793878 - 793954
Alignment:
Q  591 ttatcacattttcttaaccacatactcattagagagcaagtaaaaaa-tttctaagaaaccatatacatccacaatg 666  Q
    |||||||||||||||||||||||| |||||| | |||||||||||||  |||| |||||||||||||| ||||||||    
T  793878 ttatcacattttcttaaccacatattcattaaaaagcaagtaaaaaagattcttagaaaccatatacaaccacaatg 793954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 444 - 500
Target Start/End: Complemental strand, 1193542 - 1193486
Alignment:
Q  444 cactcatcacctaataacacaccagagcactaccaataacaaatcttaggcctaaaa 500  Q
    ||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||    
T  1193542 cactcatcacctaataacacaccagaatactacctataacaaatcttaggcctaaaa 1193486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 430 - 470
Target Start/End: Complemental strand, 1183433 - 1183393
Alignment:
Q  430 aattgaaagaaaaacactcatcacctaataacacaccagag 470  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  1183433 aattgaaagaaaaacacttatcacctaataacacaccagag 1183393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 530 - 575
Target Start/End: Original strand, 1237368 - 1237414
Alignment:
Q  530 ccatttgtactcaatatgcaataac-atatcctaagtattcaatatg 575  Q
    ||||||| ||||||||||||||||| |||||||||||| ||||||||    
T  1237368 ccatttgaactcaatatgcaataacaatatcctaagtactcaatatg 1237414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 7 - 397
Target Start/End: Complemental strand, 20183 - 19797
Alignment:
Q  7 acctttcaaccaatattttctgttgaaaggaaaactaaactgcaaaaacaattgtcttaaactcagatttatttgagtcttttaaaccaa---------- 96  Q
    ||||||||||||||||||  | ||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||              
T  20183 acctttcaaccaatatttatt-ttgaaaggaaaactagactgcaaaaacaattgccttaaactcagattcatttgagtcttttaaaccaattgatgtcac 20085  T
Q  97 -------agctacatctctcacaatgaattcctcagcacaccacctatacgtgcagctcccggctttcctttcgatgatccatccacattccatttccaa 189  Q
           |||| |||||||||||||||| |||||| |||||||||||||| |||||||||| |||| |||||| | ||||||||||||||||||| ||||    
T  20084 aaacatcagcttcatctctcacaatgaaatcctcaacacaccacctatacctgcagctcccagcttccctttcaacgatccatccacattccattaccaa 19985  T
Q  190 acattttggggagggggacaccgtactactgacaatctactgccaaacaatctctttccatgttttaatcacttgaattttatacaaatggaccacgtga 289  Q
    |||||||| ||||||||||| |||| | ||||||||||               ||||||||||||||||| ||||| |||||||||||||||||||||||    
T  19984 acattttgtggagggggacaacgtattgctgacaatct---------------ctttccatgttttaatctcttgagttttatacaaatggaccacgtga 19900  T
Q  290 tacacacacatgttctacgaagggtttgagacttgagaaaccaaaccacccaatccccaacaccacatcacattggtaacaagctgccatgacaacttct 389  Q
    ||    ||||| ||||| |||||||||||||||||||| ||| | | ||| |||||||| |||||||||||||||| | ||||||||||||||||| |||    
T  19899 ta----cacatattctatgaagggtttgagacttgagagacc-acctacctaatccccagcaccacatcacattggcatcaagctgccatgacaacctct 19805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 444 - 500
Target Start/End: Complemental strand, 19797 - 19741
Alignment:
Q  444 cactcatcacctaataacacaccagagcactaccaataacaaatcttaggcctaaaa 500  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||    
T  19797 cactcatcacctaataacacaccagaacactacctataacaaatcttaggtctaaaa 19741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 2e-57; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 102 - 394
Target Start/End: Original strand, 20256914 - 20257186
Alignment:
Q  102 catctctcacaatgaattcctcagcacaccacctatacgtgcagctcccggctttcctttcgatgatccatccacattccatttccaaacattttgggga 201  Q
    ||||||| |||||||| |||| | ||||| |||||||  ||||||||||||||| |||||| | ||||||||||||||||||| |||||||||||| |||    
T  20256914 catctctaacaatgaaatccttaacacacaacctatatctgcagctcccggcttccctttcaacgatccatccacattccattaccaaacattttgtgga 20257013  T
Q  202 gggggacaccgtactactgacaatctactgccaaacaatctctttccatgttttaatcacttgaattttatacaaatggaccacgtgatacacacacatg 301  Q
    |||||||||| || | |||||||||||               |||||||||||||||| ||||||||||||||||||||||||||||||    ||||||     
T  20257014 gggggacaccatattgctgacaatcta---------------tttccatgttttaatctcttgaattttatacaaatggaccacgtgat----acacata 20257094  T
Q  302 ttctacgaagggtttgagacttgagaaaccaaaccacccaatccccaacaccacatcacattggtaacaagctgccatgacaacttctgataa 394  Q
    ||||| ||| |||||||||||||||| ||| | | ||| |||||||||||| |||||||||||||| || |||||||||||||||||||||||    
T  20257095 ttctatgaaaggtttgagacttgagagacc-acctacctaatccccaacacgacatcacattggtatcaggctgccatgacaacttctgataa 20257186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 457 - 500
Target Start/End: Original strand, 20257183 - 20257226
Alignment:
Q  457 ataacacaccagagcactaccaataacaaatcttaggcctaaaa 500  Q
    ||||||||| ||| ||||||| ||||||||||||||||||||||    
T  20257183 ataacacactagaacactacctataacaaatcttaggcctaaaa 20257226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 444 - 500
Target Start/End: Complemental strand, 12857260 - 12857204
Alignment:
Q  444 cactcatcacctaataacacaccagagcactaccaataacaaatcttaggcctaaaa 500  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  12857260 cactcatcacctaataacacaccagaacactacctataacaaatcttaggcctaaaa 12857204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 295 - 397
Target Start/End: Complemental strand, 12857361 - 12857260
Alignment:
Q  295 acacatgttctacgaagggtttgagacttgagaaaccaaaccacccaatccccaacaccacatcacattggtaacaagctgccatgacaacttctgataa 394  Q
    |||||| ||||| |||||||||||||||||||| ||||  | ||| |||||||| ||| |||||||||| | | ||||||||||||||||| ||||||||    
T  12857361 acacatattctatgaagggtttgagacttgagagaccac-ctacctaatccccagcactacatcacatttgcatcaagctgccatgacaacctctgataa 12857263  T
Q  395 atc 397  Q
    |||    
T  12857262 atc 12857260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 593 - 659
Target Start/End: Complemental strand, 10203863 - 10203797
Alignment:
Q  593 atcacattttcttaaccacatactcattagagagcaagtaaaaaatttctaagaaaccatatacatc 659  Q
    |||||||||| ||||||||||||||||||||||||||||||| || |||| ||||| ||||| ||||    
T  10203863 atcacatttttttaaccacatactcattagagagcaagtaaacaaattcttagaaatcatattcatc 10203797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 424 - 459
Target Start/End: Complemental strand, 10203995 - 10203960
Alignment:
Q  424 ccaaacaattgaaagaaaaacactcatcacctaata 459  Q
    ||||||||||||||||||||||||| ||||||||||    
T  10203995 ccaaacaattgaaagaaaaacactcttcacctaata 10203960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 424 - 477
Target Start/End: Complemental strand, 12857529 - 12857475
Alignment:
Q  424 ccaaacaattgaaagaaaa-acactcatcacctaataacacaccagagcactacc 477  Q
    ||||||||||||||||||| |||||||| |||||| ||||||| ||| |||||||    
T  12857529 ccaaacaattgaaagaaaagacactcataacctaagaacacacaagatcactacc 12857475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University