View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5458-Insertion-4 (Length: 640)

Name: NF5458-Insertion-4
Description: NF5458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5458-Insertion-4
NF5458-Insertion-4
[»] chr8 (17 HSPs)
chr8 (8-639)||(39785387-39786020)
chr8 (418-637)||(39791392-39791613)
chr8 (406-639)||(39795806-39796041)
chr8 (430-639)||(39777329-39777540)
chr8 (9-201)||(39795327-39795522)
chr8 (8-139)||(39791136-39791267)
chr8 (209-379)||(6863034-6863205)
chr8 (8-149)||(39777103-39777244)
chr8 (209-339)||(34018199-34018329)
chr8 (211-354)||(4472242-4472384)
chr8 (212-310)||(5654688-5654786)
chr8 (211-376)||(34856393-34856551)
chr8 (246-378)||(41957463-41957597)
chr8 (216-290)||(38825797-38825871)
chr8 (245-347)||(11109571-11109673)
chr8 (245-347)||(11595554-11595658)
chr8 (223-288)||(33474227-33474292)
[»] chr5 (5 HSPs)
chr5 (209-377)||(33155525-33155693)
chr5 (209-379)||(3769800-3769965)
chr5 (231-354)||(2818964-2819087)
chr5 (214-277)||(19386806-19386869)
chr5 (216-271)||(25928067-25928122)
[»] chr3 (11 HSPs)
chr3 (209-379)||(40386291-40386460)
chr3 (209-378)||(49596626-49596796)
chr3 (215-378)||(42347312-42347474)
chr3 (235-378)||(20753206-20753349)
chr3 (209-374)||(35052468-35052626)
chr3 (207-320)||(2585899-2586012)
chr3 (209-290)||(49995011-49995092)
chr3 (219-285)||(48184550-48184616)
chr3 (226-284)||(4221643-4221701)
chr3 (277-334)||(7882811-7882868)
chr3 (249-289)||(17105986-17106026)
[»] chr7 (8 HSPs)
chr7 (214-374)||(46981316-46981474)
chr7 (207-308)||(23940529-23940630)
chr7 (209-374)||(6856902-6857071)
chr7 (209-270)||(39611732-39611793)
chr7 (210-305)||(37105485-37105580)
chr7 (264-317)||(11457626-11457679)
chr7 (212-288)||(5989672-5989748)
chr7 (209-367)||(26853088-26853246)
[»] chr4 (10 HSPs)
chr4 (217-354)||(34113633-34113770)
chr4 (238-360)||(8482358-8482480)
chr4 (307-379)||(43405221-43405293)
chr4 (209-354)||(43613635-43613779)
chr4 (209-303)||(6365186-6365280)
chr4 (207-317)||(15835339-15835449)
chr4 (217-301)||(26688736-26688819)
chr4 (209-265)||(56127371-56127427)
chr4 (221-308)||(36158935-36159023)
chr4 (209-281)||(51079059-51079131)
[»] chr6 (4 HSPs)
chr6 (218-374)||(2188700-2188856)
chr6 (212-339)||(2572263-2572391)
chr6 (226-290)||(13587603-13587667)
chr6 (211-329)||(957180-957297)
[»] chr1 (9 HSPs)
chr1 (207-315)||(39742516-39742624)
chr1 (207-297)||(46014498-46014588)
chr1 (219-303)||(7890383-7890467)
chr1 (208-271)||(8041396-8041459)
chr1 (211-317)||(27925348-27925454)
chr1 (223-283)||(6586876-6586936)
chr1 (219-287)||(7890265-7890333)
chr1 (239-298)||(49920309-49920368)
chr1 (232-268)||(7817340-7817376)
[»] chr2 (4 HSPs)
chr2 (212-286)||(37609341-37609415)
chr2 (209-361)||(4522266-4522418)
chr2 (209-292)||(38318054-38318137)
chr2 (226-316)||(17104575-17104665)


Alignment Details
Target: chr8 (Bit Score: 591; Significance: 0; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 8 - 639
Target Start/End: Original strand, 39785387 - 39786020
Alignment:
Q  8 aatgggcccctgtacttggcgagatacatcttggttcttaccggaagcatcaagtgaacatctggctacgttttagtatcctgggtcctaagctttacat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  39785387 aatgggcccctgtacttggcgagatacatcttggttcttaccggaagcatcaagtgaacacctggctacgttttagtatcttgggtcctaagctttacat 39785486  T
Q  108 aaatacaactccagtaagttttccatcttgtatttttaatgtttattgagttagtgtttcccatgctttcaatctgctggtacactgtgaggcttggaag 207  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39785487 aaatacaactccagtaagttttccatcttggatttttaatgtttattgagttagtgtttcccatgctttcaatctgctggtacactgtgaggcttggaag 39785586  T
Q  208 atgcacaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39785587 atgcacaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttt 39785686  T
Q  308 tgaactaatggtgcaaaggacacttgtgcatgatgcaagaccattttccttgtgtatgttggacaaagcctactttgagttcctctaatattttctgcaa 407  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  39785687 tgaactaatggcgcaaaggacacttgtgcatgatgcaagaccattttccttgtgtatgttggacaaagcctactttgagttcctctaatattttctacaa 39785786  T
Q  408 ttgcattggctccttattttcttgatggcaggtagatgtaggtaatagaccagtaactggccttagattacaattggaagggagtagaagcaaccggttg 507  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39785787 ttgcattgggtccttattttcttgatggcaggtagatgtaggtaatagaccagtaactggccttagattacaattggaagggagtagaagcaaccggttg 39785886  T
Q  508 gccattcatctgcagcatctagcttccctacccaagtccttaccacttgcagacaatgcaaatgcatatttatc--gtgactcatacagctgtaccttcc 605  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  39785887 gccattcatctgcagcatctagcttccttacccaagtccttaccacttgcagacaatgcaaatgcatatttatcttgtgactcatacagctgtaccttcc 39785986  T
Q  606 ataagaaagtgaaacggaattgcttttcatatgt 639  Q
    ||||||||||||||||||| ||||||||||||||    
T  39785987 ataagaaagtgaaacggaactgcttttcatatgt 39786020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 418 - 637
Target Start/End: Original strand, 39791392 - 39791613
Alignment:
Q  418 tccttattttcttgatggcaggtagatgtaggtaatagaccagtaactggccttagattacaattggaagggagtagaagcaaccggttggccattcatc 517  Q
    ||||| ||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39791392 tcctttttttcttaatggtaggtagatgtaggtaaaagaccagtaactggccttagattacaattggaagggagtagaagcaaccggttggccattcatc 39791491  T
Q  518 tgcagcatctagcttccctacccaagtccttaccacttgcagacaatgcaaatgcatatttatc--gtgactcatacagctgtaccttccataagaaagt 615  Q
    |||||||||| |||||||||||||||||||||||||| || ||||||| |||| | ||||||||  || |||| |||||||||| |||||||||||||||    
T  39791492 tgcagcatctggcttccctacccaagtccttaccactcgcggacaatgaaaatacttatttatcttgtaactcgtacagctgtaacttccataagaaagt 39791591  T
Q  616 gaaacggaattgcttttcatat 637  Q
    |||| |||| ||||||||||||    
T  39791592 gaaatggaactgcttttcatat 39791613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 406 - 639
Target Start/End: Original strand, 39795806 - 39796041
Alignment:
Q  406 aattgcattggctccttattttcttgatggcaggtagatgtaggtaatagaccagtaactggccttagattacaattggaagggagtagaagcaaccggt 505  Q
    ||||||||| ||| ||| ||||||||||| |||||||||||||| | ||| ||||||||||||||||||||||||||||||||||  |||||||||||||    
T  39795806 aattgcattagcttctttttttcttgatgacaggtagatgtaggcattaggccagtaactggccttagattacaattggaagggaaaagaagcaaccggt 39795905  T
Q  506 tggccattcatctgcagcatctagcttccctacccaagtccttaccacttgcagacaatgcaaatgcatatt--tatcgtgactcatacagctgtacctt 603  Q
    |||||||| ||||||||||||| | ||| |||||||||||||||||||| ||||||||||||  ||| ||||  | | ||||||| || ||||| |  |     
T  39795906 tggccattaatctgcagcatctggtttctctacccaagtccttaccactagcagacaatgcacctgcttattcgtcttgtgactcgtatagctgcaagta 39796005  T
Q  604 ccataagaaagtgaaacggaattgcttttcatatgt 639  Q
    ||| |||||| ||||| |||| ||||||||||||||    
T  39796006 ccacaagaaactgaaatggaactgcttttcatatgt 39796041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 430 - 639
Target Start/End: Original strand, 39777329 - 39777540
Alignment:
Q  430 tgatggcaggtagatgtaggtaatagaccagtaactggccttagattacaattggaagggagtagaagcaaccggttggccattcatctgcagcatctag 529  Q
    |||||| |||||||||| |||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||| || ||||||||      
T  39777329 tgatggaaggtagatgttggtaatagaccagtaattggcctgagattacaattggaagggagaagaagcaaccggttggccattcaccttcagcatctga 39777428  T
Q  530 cttccctacccaagtccttaccacttgcagacaatgcaaatgcatatttatc--gtgactcatacagctgtaccttccataagaaagtgaaacggaattg 627  Q
    ||||  |||| |||||||||||||| |||||||| |||||||| ||||| ||  ||||||| || ||||| |  |||||||||||||||||| |||  ||    
T  39777429 cttctttaccaaagtccttaccactcgcagacaacgcaaatgcctatttgtcttgtgactcctatagctgcaatttccataagaaagtgaaatggagctg 39777528  T
Q  628 cttttcatatgt 639  Q
    ||||||||||||    
T  39777529 cttttcatatgt 39777540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 9 - 201
Target Start/End: Original strand, 39795327 - 39795522
Alignment:
Q  9 atgggcccctgtacttggcgagatacatcttggttcttaccggaagcatcaagtgaacat---ctggctacgttttagtatcctgggtcctaagctttac 105  Q
    |||||||||| ||| |||| |||||||||||| || | || |||||||||||||||||     || |||||| ||||||||| |||||||||||||||||    
T  39795327 atgggcccctatacatggcaagatacatcttgattataactggaagcatcaagtgaaccagtcctcgctacgatttagtatcttgggtcctaagctttac 39795426  T
Q  106 ataaatacaactccagtaagttttccatcttgtatttttaatgtttattgagttagtgtttcccatgctttcaatctgctggtacactgtgaggct 201  Q
    |||||||||| || ||||||||||||| ||||||||| | |||||| ||||||| |||||||||||||||||||| |||||||| |||||||||||    
T  39795427 ataaatacaaatctagtaagttttccagcttgtatttcttatgttttttgagttggtgtttcccatgctttcaatgtgctggtaaactgtgaggct 39795522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 39791136 - 39791267
Alignment:
Q  8 aatgggcccctgtacttggcgagatacatcttggttcttaccggaagcatcaagtgaacatctggctacgttttagtatcctgggtcctaagctttacat 107  Q
    |||||||||||||| |||||||||||||||||| ||| ||| |||||||||||||||||| |||| |||| ||||||||  |||||||||||||||||||    
T  39791136 aatgggcccctgtaattggcgagatacatcttgattcctactggaagcatcaagtgaacacctggttacgatttagtatattgggtcctaagctttacat 39791235  T
Q  108 aaatacaactccagtaagttttccatcttgta 139  Q
    ||||||||||||||||||||||||||||||||    
T  39791236 aaatacaactccagtaagttttccatcttgta 39791267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 209 - 379
Target Start/End: Original strand, 6863034 - 6863205
Alignment:
Q  209 tgcacaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgac-tttt 307  Q
    |||| ||||||||||||||||||||||| || |||||||||| |||||||||||||||||||| ||| |||||||||||||| | ||||| |||| ||||    
T  6863034 tgcataagtgagacaagtcttgcatcatacacaagctagtttccaccattggatcaataaatctcaccattaaattaaatgaaatatgatgtgacttttt 6863133  T
Q  308 tgaactaatggtgcaaaggacacttgtgcatgatgcaagaccattttccttgtgtatgttggacaaagccta 379  Q
    | | ||||||||| ||| | |||||||||||| |||||||||||||| |||||| ||||| |||||||||||    
T  6863134 ttatctaatggtggaaaaggcacttgtgcatggtgcaagaccattttgcttgtgcatgttagacaaagccta 6863205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 8 - 149
Target Start/End: Original strand, 39777103 - 39777244
Alignment:
Q  8 aatgggcccctgtacttggcgagatacatcttggttcttaccggaagcatcaagtgaacatctggctacgttttagtatcctgggtcctaagctttacat 107  Q
    ||||||||||| ||||| | ||||||| ||||||||||||| ||||||||||| |||| | ||||||| | ||||||||| |||||||||||||||||||    
T  39777103 aatgggcccctatacttagtgagatacgtcttggttcttactggaagcatcaaatgaatacctggctaaggtttagtatcttgggtcctaagctttacat 39777202  T
Q  108 aaatacaactccagtaagttttccatcttgtatttttaatgt 149  Q
    |||||||| |||||||||| |||| ||||| |||||||||||    
T  39777203 aaatacaattccagtaagtcttccctcttgcatttttaatgt 39777244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 209 - 339
Target Start/End: Complemental strand, 34018329 - 34018199
Alignment:
Q  209 tgcacaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgacttttt 308  Q
    |||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||| |||||||||    
T  34018329 tgcataagtgagacaagtcttgcatcatgcacaagctagtttttaccattggatcaataaattccaccattaaattaaatgagaaatgatttgacttttt 34018230  T
Q  309 gaactaatggtgcaaaggacacttgtgcatg 339  Q
    || |  |||||| ||| |  |||||||||||    
T  34018229 gatccgatggtgaaaaagttacttgtgcatg 34018199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 211 - 354
Target Start/End: Complemental strand, 4472384 - 4472242
Alignment:
Q  211 cacaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttga 310  Q
    ||||||| |||||| |||||||| | ||||||  ||||||| |||||| ||||||||||||  ||| ||||||||||||||| |||||||||||| ||||    
T  4472384 cacaagttagacaaatcttgcattacgcataaattagtttt-accattagatcaataaatcttacatttaaattaaatgagatatgatatgacttattga 4472286  T
Q  311 actaatggtgcaaaggacacttgtgcatgatgcaagaccatttt 354  Q
     | | | ||| ||| |||||||||||||||||||||||||||||    
T  4472285 tccattagtgaaaaagacacttgtgcatgatgcaagaccatttt 4472242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 212 - 310
Target Start/End: Complemental strand, 5654786 - 5654688
Alignment:
Q  212 acaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttga 310  Q
    |||| |||||||||||||| ||||| || || | | ||||||||| | ||| ||||||| |||| |||||||||||||||| |||||||||||| ||||    
T  5654786 acaaatgagacaagtcttgtatcatacagaaacaaattttcaccacttgataaataaattccactattaaattaaatgagatatgatatgacttattga 5654688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 376
Target Start/End: Original strand, 34856393 - 34856551
Alignment:
Q  211 cacaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttga 310  Q
    |||||||||||| ||||||||||||||| ||||||||||| ||||||| || |||       ||| ||||||||||| || | |||||  | ||| || |    
T  34856393 cacaagtgagacgagtcttgcatcatgcttaagctagtttccaccatttgaccaa-------caccattaaattaaaagaaatatgatgcggcttcttta 34856485  T
Q  311 actaatggtgcaaaggacacttgtgcatgatgcaagaccattttccttgtgtatgttggacaaagc 376  Q
     | |||  || ||| |||||||||||||| |||||||| ||||| |||||| ||||| ||||||||    
T  34856486 tccaattatgaaaaagacacttgtgcatggtgcaagactattttgcttgtgcatgttagacaaagc 34856551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 378
Target Start/End: Complemental strand, 41957597 - 41957463
Alignment:
Q  246 agttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaatggtgcaaa--ggacacttgtgcatgatgc 343  Q
    ||||| |||||||| ||||||||||  ||| |||||||||||| | | ||||||||||||||| | | ||||  | |||   |||| ||||||||| |||    
T  41957597 agtttccaccattgaatcaataaatttcacgattaaattaaataaaatatgatatgactttttaatccaatgacggaaattagacatttgtgcatggtgc 41957498  T
Q  344 aagaccattttccttgtgtatgttggacaaagcct 378  Q
    ||||||||||| |||||| ||||| ||||| ||||    
T  41957497 aagaccattttacttgtgcatgttagacaaggcct 41957463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 216 - 290
Target Start/End: Original strand, 38825797 - 38825871
Alignment:
Q  216 gtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatga 290  Q
    ||||||||||||||||||||||||||| ||| ||||| |||||| || |||||||| ||| | |||| |||||||    
T  38825797 gtgagacaagtcttgcatcatgcataaactatttttctccattgcattaataaatctcaccaataaactaaatga 38825871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 245 - 347
Target Start/End: Complemental strand, 11109673 - 11109571
Alignment:
Q  245 tagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaatggtgcaaaggacacttgtgcatgatgca 344  Q
    ||||||||| | | |||||||||||| | || ||||||||||||| || ||||||||| |  |||| | ||| ||  |||||| | ||||||||||||||    
T  11109673 tagttttcatcgtaggatcaataaattctactattaaattaaatgggatatgatatgattgattgatcaaatagtaaaaaggatatttgtgcatgatgca 11109574  T
Q  345 aga 347  Q
    |||    
T  11109573 aga 11109571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 347
Target Start/End: Complemental strand, 11595658 - 11595554
Alignment:
Q  245 tagttttcaccattggatcaataaatcc--cacaattaaattaaatgagaaatgatatgactttttgaactaatggtgcaaaggacacttgtgcatgatg 342  Q
    ||||||||| |||||||||||||||| |  |||  |||||||||||| || ||||||||| |  |||| | ||| ||  |||||| | ||||||||||||    
T  11595658 tagttttcatcattggatcaataaattctacacttttaaattaaatgggatatgatatgaatgattgatcaaatagtaaaaaggatatttgtgcatgatg 11595559  T
Q  343 caaga 347  Q
    |||||    
T  11595558 caaga 11595554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 33474227 - 33474292
Alignment:
Q  223 aagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaat 288  Q
    ||||||||||||||| | ||| | |||||||||||| ||||||||| |  ||| ||||||||||||    
T  33474227 aagtcttgcatcatgtacaaggttgttttcaccatttgatcaataagtttcaccattaaattaaat 33474292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 2e-54; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 209 - 377
Target Start/End: Complemental strand, 33155693 - 33155525
Alignment:
Q  209 tgcacaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgacttttt 308  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  33155693 tgcacaagtgagacaagtcttgcatcatgcacaagctagttttcaccattggatcaataaatcccaccattaaattaaatgagaaatgatttgacttttt 33155594  T
Q  309 gaactaatggtgcaaaggacacttgtgcatgatgcaagaccattttccttgtgtatgttggacaaagcc 377  Q
    || |  |||||| ||| | |||||||||||| |||| ||||||||| |||||| |||||  ||||||||    
T  33155593 gatccgatggtgaaaaagtcacttgtgcatggtgcaggaccattttgcttgtgcatgttaaacaaagcc 33155525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 209 - 379
Target Start/End: Complemental strand, 3769965 - 3769800
Alignment:
Q  209 tgcacaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgacttttt 308  Q
    ||||||||||| ||||||||||||||||||| ||| ||||||||||||||||| |    |||||||| |||| || |||||||| |||||||||||| ||    
T  3769965 tgcacaagtgaaacaagtcttgcatcatgcacaagttagttttcaccattggacc----aatcccaccattagatcaaatgagatatgatatgacttgtt 3769870  T
Q  309 gaactaatggtgcaaaggacacttgtgcatgatgcaagaccattttccttgtgtatgttggacaaagccta 379  Q
    || | ||||||| |||| ||||||||||||| ||||||| |||||| |||||||||||  |||||||||||    
T  3769869 gatccaatggtgaaaagaacacttgtgcatggtgcaaga-cattttacttgtgtatgtgagacaaagccta 3769800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 231 - 354
Target Start/End: Original strand, 2818964 - 2819087
Alignment:
Q  231 catcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaatggtgcaaaggacac 330  Q
    |||||| || ||| ||||||||| ||||||||||||||||| ||| |||| ||||||||| | |||||   |||| |||| | ||| ||  ||| |||      
T  2818964 catcatacacaagttagttttcatcattggatcaataaatctcaccattagattaaatgaaatatgatgcaacttattgatccaatagtaaaaaagacgt 2819063  T
Q  331 ttgtgcatgatgcaagaccatttt 354  Q
    ||||||||| ||||||||||||||    
T  2819064 ttgtgcatggtgcaagaccatttt 2819087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 214 - 277
Target Start/End: Original strand, 19386806 - 19386869
Alignment:
Q  214 aagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaa 277  Q
    ||||||||||| ||| |||||||||| |||||| |||| ||||||| ||||||||||| |||||    
T  19386806 aagtgagacaaatctcgcatcatgcacaagctaatttttaccattgcatcaataaatctcacaa 19386869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 25928122 - 25928067
Alignment:
Q  216 gtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatc 271  Q
    |||||| || |||||||||||||| || ||| ||||||||||| ||||||||||||    
T  25928122 gtgagataaatcttgcatcatgcacaaactaattttcaccattagatcaataaatc 25928067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 8e-32; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 209 - 379
Target Start/End: Original strand, 40386291 - 40386460
Alignment:
Q  209 tgcacaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgacttttt 308  Q
    ||||||||||  |||||| |||||||||||| |||| ||||| |||||||||||||||||||| ||| ||||||||||||||  ||| || |||| ||||    
T  40386291 tgcacaagtgtaacaagttttgcatcatgcacaagccagtttccaccattggatcaataaatctcactattaaattaaatgaataattatgtgac-tttt 40386389  T
Q  309 gaactaatggtgcaaaggacacttgtgcatgatgcaagaccattttccttgtgtatgttggacaaagccta 379  Q
    || | ||||||||||| |||||||||||||| ||||| ||| ||||  || || ||||| |||||||||||    
T  40386390 gatccaatggtgcaaaagacacttgtgcatggtgcaaaacctttttgtttttgcatgttagacaaagccta 40386460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 209 - 378
Target Start/End: Complemental strand, 49596796 - 49596626
Alignment:
Q  209 tgcacaagtgagac-aagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttt 307  Q
    ||||||| |||||| |||||||| ||||||| ||||||| ||| |||||||| | ||||||||| ||| ||||||||||| || | ||||| ||||||||    
T  49596796 tgcacaaatgagaccaagtcttgtatcatgcgtaagctaatttccaccattgaaccaataaatctcactattaaattaaacgaaatatgatgtgactttt 49596697  T
Q  308 tgaactaatggtgcaaaggacacttgtgcatgatgcaagaccattttccttgtgtatgttggacaaagcct 378  Q
    | | |||||| || ||| ||||| ||||||||||| ||||| ||||| |||||  ||||| ||||||||||    
T  49596696 taatctaatgatggaaatgacacgtgtgcatgatgtaagactattttgcttgtccatgttagacaaagcct 49596626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 215 - 378
Target Start/End: Original strand, 42347312 - 42347474
Alignment:
Q  215 agtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttgaacta 314  Q
    ||||| ||||||||||||| ||||| ||||||||||| |  |||||||||||||||| ||  ||||||||| |||||| |||||  ||||| || | | |    
T  42347312 agtgaaacaagtcttgcat-atgcacaagctagtttttattattggatcaataaatctcatcattaaattatatgagatatgatgcgacttattaatcca 42347410  T
Q  315 atggtgcaaaggacacttgtgcatgatgcaagaccattttccttgtgtatgttggacaaagcct 378  Q
    |||||| ||||||||||| | |||| |||||||||||||| |||||| |  || ||||||||||    
T  42347411 atggtgaaaaggacacttattcatggtgcaagaccattttgcttgtgcaatttagacaaagcct 42347474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 235 - 378
Target Start/End: Original strand, 20753206 - 20753349
Alignment:
Q  235 atgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaatggtgcaaaggacacttgt 334  Q
    |||||||||||||||| || ||| ||||||||||||| ||   |||||| |||||| | || || ||||||||||||| ||||||| ||| |||| ||||    
T  20753206 atgcataagctagtttccatcatcggatcaataaatctcatcgttaaatgaaatgaaatataatgtgactttttgaaccaatggtggaaaagacatttgt 20753305  T
Q  335 gcatgatgcaagaccattttccttgtgtatgttggacaaagcct 378  Q
     || | || ||||||||||| |||||| ||||  ||||||||||    
T  20753306 acacggtggaagaccattttacttgtgcatgtaagacaaagcct 20753349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 209 - 374
Target Start/End: Original strand, 35052468 - 35052626
Alignment:
Q  209 tgcacaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgacttttt 308  Q
    |||||||||||||||| | ||||||||||||  ||||| |||  ||||||||||| ||   ||| |    |||| ||||| | | ||||| |||||||||    
T  35052468 tgcacaagtgagacaaattttgcatcatgcacgagctaatttctaccattggatcgat---tccaa----taaaataaattaaatatgatgtgacttttt 35052560  T
Q  309 gaactaatggtgcaaaggacacttgtgcatgatgcaagaccattttccttgtgtatgttggacaaa 374  Q
    || | ||||||| ||| |||||||||||||||||||| | |||||| |||||| ||||| ||||||    
T  35052561 gatccaatggtggaaaagacacttgtgcatgatgcaatatcattttgcttgtgcatgttagacaaa 35052626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 207 - 320
Target Start/End: Complemental strand, 2586012 - 2585899
Alignment:
Q  207 gatgcacaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgacttt 306  Q
    ||||||||| ||||| ||||||||||||||  |||| |||||||| |||||| ||| |||||||  ||   ||||||||||||||| || |||||||||     
T  2586012 gatgcacaaatgagataagtcttgcatcatctataaactagttttaaccattagataaataaatttcattgttaaattaaatgagatataatatgactta 2585913  T
Q  307 ttgaactaatggtg 320  Q
    |||| |||| ||||    
T  2585912 ttgatctaacggtg 2585899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 209 - 290
Target Start/End: Complemental strand, 49995092 - 49995011
Alignment:
Q  209 tgcacaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatga 290  Q
    ||||||||||||||||||||||||||||||| ||  |||||||   ||||  ||| |||||| |||| ||||||||||||||    
T  49995092 tgcacaagtgagacaagtcttgcatcatgcacaaattagtttttgacattacatcgataaattccaccattaaattaaatga 49995011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 285
Target Start/End: Complemental strand, 48184616 - 48184550
Alignment:
Q  219 agacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaatta 285  Q
    ||||||||||||||||||||| || ||||||||  |||||| ||||||||||| ||| |||| ||||    
T  48184616 agacaagtcttgcatcatgcacaacctagtttttgccattgaatcaataaatctcaccattagatta 48184550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 226 - 284
Target Start/End: Original strand, 4221643 - 4221701
Alignment:
Q  226 tcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaatt 284  Q
    |||||||||| ||| || ||| ||||||| |||||||||||||||| ||| ||||||||    
T  4221643 tcttgcatcacgcacaaactaattttcactattggatcaataaatctcaccattaaatt 4221701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 334
Target Start/End: Complemental strand, 7882868 - 7882811
Alignment:
Q  277 attaaattaaatgagaaatgatatgactttttgaactaatggtgcaaaggacacttgt 334  Q
    |||||||||||||||||||||||| |||||| || ||||| ||  ||| |||||||||    
T  7882868 attaaattaaatgagaaatgatataacttttggatctaatagtaaaaacgacacttgt 7882811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 17105986 - 17106026
Alignment:
Q  249 tttcaccattggatcaataaatcccacaattaaattaaatg 289  Q
    |||||||||||||| |||||| ||||| |||||||||||||    
T  17105986 tttcaccattggattaataaaacccaccattaaattaaatg 17106026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 7e-29; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 214 - 374
Target Start/End: Complemental strand, 46981474 - 46981316
Alignment:
Q  214 aagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttgaact 313  Q
    |||| ||| ||||||||||||| | | |||||| ||||||||||||||||||||| |  ||| |||||||||| ||||||||  ||||||||||||| |     
T  46981474 aagtaagataagtcttgcatcaagtacaagctaattttcaccattggatcaataatttacaccattaaattaattgagaaat--tatgactttttgatcc 46981377  T
Q  314 aatggtgcaaaggacacttgtgcatgatgcaagaccattttccttgtgtatgttggacaaa 374  Q
    ||||||| ||| | |||||||||||| |||||||||||||  |||||| ||||| ||||||    
T  46981376 aatggtgaaaacggcacttgtgcatggtgcaagaccatttagcttgtgcatgttagacaaa 46981316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 207 - 308
Target Start/End: Original strand, 23940529 - 23940630
Alignment:
Q  207 gatgcacaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgacttt 306  Q
    ||||||||||||||| | ||||||||||||||| |||||| |||||| | || |||||||||||| ||| |||||||||||||| | || ||| ||||||    
T  23940529 gatgcacaagtgagatatgtcttgcatcatgcacaagctacttttcatcgttagatcaataaatctcaccattaaattaaatgaaatataatacgacttt 23940628  T
Q  307 tt 308  Q
    ||    
T  23940629 tt 23940630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 209 - 374
Target Start/End: Original strand, 6856902 - 6857071
Alignment:
Q  209 tgcacaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatc----aataaatcccacaattaaattaaatgagaaatgatatgact 304  Q
    |||||||||||||| |||||||||||||||||| |||||||| || |||||||||    | |||||| ||  || ||||||||||| |  |||| | |||    
T  6856902 tgcacaagtgagacgagtcttgcatcatgcataggctagtttccatcattggatcagtaagtaaatctcaacatcaaattaaatgaaatttgatgttact 6857001  T
Q  305 ttttgaactaatggtgcaaaggacacttgtgcatgatgcaagaccattttccttgtgtatgttggacaaa 374  Q
    |||| | ||||||||| ||| || ||||||||||| |||||| | ||||| |||||  ||||| ||||||    
T  6857002 tttttatctaatggtggaaaagaaacttgtgcatggtgcaaggctattttgcttgtacatgttagacaaa 6857071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 39611793 - 39611732
Alignment:
Q  209 tgcacaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaat 270  Q
    |||||||||||| |||||||||||| ||| |||| ||| ||| |||||||||||||||||||    
T  39611793 tgcacaagtgaggcaagtcttgcataatgaataaactattttgcaccattggatcaataaat 39611732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 210 - 305
Target Start/End: Complemental strand, 37105580 - 37105485
Alignment:
Q  210 gcacaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactt 305  Q
    |||||||||||||| || |||  | ||||| |||||||||||||| |  ||| |||||||| |||| |||||||||||||||| || || ||||||    
T  37105580 gcacaagtgagacatgttttgtttaatgcacaagctagttttcactaccggagcaataaattccactattaaattaaatgagatataatgtgactt 37105485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 264 - 317
Target Start/End: Original strand, 11457626 - 11457679
Alignment:
Q  264 aataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaatg 317  Q
    ||||||| |||| ||||||||||||||||| |||| ||||||||||| ||||||    
T  11457626 aataaattccaccattaaattaaatgagaagtgatgtgactttttgatctaatg 11457679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 212 - 288
Target Start/End: Original strand, 5989672 - 5989748
Alignment:
Q  212 acaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaat 288  Q
    |||||| ||||||||||| ||||| ||||||  || ||||||||| |||||||||||||  ||  ||||||||||||    
T  5989672 acaagtaagacaagtcttacatcacgcataatataattttcaccaatggatcaataaatgtcaacattaaattaaat 5989748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 209 - 367
Target Start/End: Complemental strand, 26853246 - 26853088
Alignment:
Q  209 tgcacaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgacttttt 308  Q
    |||| ||||||||| ||||||  |||||||| ||| ||||||| |  ||| ||| ||||||||  || |||||| ||||||| | | ||| | |||| ||    
T  26853246 tgcataagtgagacgagtcttttatcatgcacaagttagtttttattattagattaataaatcttaccattaaactaaatgatataagatgttacttatt 26853147  T
Q  309 gaactaatggtgcaaaggacacttgtgcatgatgcaagaccattttccttgtgtatgtt 367  Q
     | | || |||| ||| |||| || | ||||||||||||||||||| |||||| |||||    
T  26853146 aatccaacggtgaaaaagacattttttcatgatgcaagaccattttacttgtgcatgtt 26853088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 217 - 354
Target Start/End: Original strand, 34113633 - 34113770
Alignment:
Q  217 tgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaat 316  Q
    |||||||||| |||||||||| ||||| ||||||| | ||||| ||||||||||| ||| |||||||||||||| | ||||| |||||| |||| | |||    
T  34113633 tgagacaagtgttgcatcatgtataagttagtttttatcattgaatcaataaatctcactattaaattaaatgatatatgatgtgacttattgatcaaat 34113732  T
Q  317 ggtgcaaaggacacttgtgcatgatgcaagaccatttt 354  Q
    | |  ||| || |||||||||||||||||||| |||||    
T  34113733 gatataaatgatacttgtgcatgatgcaagacaatttt 34113770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 238 - 360
Target Start/End: Original strand, 8482358 - 8482480
Alignment:
Q  238 cataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaatggtgcaaaggacacttgtgca 337  Q
    ||||| ||||||||||||||||| |||||||||  ||| |||||||||||||| | |||| |||||||||||| ||||||||| |   ||| ||||||||    
T  8482358 cataaactagttttcaccattggttcaataaatttcaccattaaattaaatgaaatatgacatgactttttgatctaatggtggatcagacgcttgtgca 8482457  T
Q  338 tgatgcaagaccattttccttgt 360  Q
    |  |||||||||||||| |||||    
T  8482458 tagtgcaagaccatttttcttgt 8482480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 307 - 379
Target Start/End: Original strand, 43405221 - 43405293
Alignment:
Q  307 ttgaactaatggtgcaaaggacacttgtgcatgatgcaagaccattttccttgtgtatgttggacaaagccta 379  Q
    |||| ||||||||| |||||| ||||||||||||||||||| |||||| |||||||||||| |||||| ||||    
T  43405221 ttgatctaatggtgaaaaggatacttgtgcatgatgcaagatcattttacttgtgtatgttagacaaaaccta 43405293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 209 - 354
Target Start/End: Original strand, 43613635 - 43613779
Alignment:
Q  209 tgcacaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgacttttt 308  Q
    |||||||||||||||||||||||||||  || || |||||||||||  ||| |||||||||| | || ||| ||||||||||||  ||||||||||| ||    
T  43613635 tgcacaagtgagacaagtcttgcatcaaacacaaactagttttcactgttg-atcaataaattcaaccatttaattaaatgagacgtgatatgacttatt 43613733  T
Q  309 gaactaatggtgcaaaggacacttgtgcatgatgcaagaccatttt 354  Q
    || || ||| |  ||| || |||| | |||| || |||||||||||    
T  43613734 gatctgatgataaaaaagatacttatacatggtgtaagaccatttt 43613779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 209 - 303
Target Start/End: Original strand, 6365186 - 6365280
Alignment:
Q  209 tgcacaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgac 303  Q
    |||| |||||| ||| ||||||||||||||||| | || |||| | ||||||||||||||||  ||| |||||||||||| ||| || |||||||    
T  6365186 tgcataagtgaaacacgtcttgcatcatgcatatgttaatttttatcattggatcaataaatttcactattaaattaaataagatataatatgac 6365280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 207 - 317
Target Start/End: Complemental strand, 15835449 - 15835339
Alignment:
Q  207 gatgcacaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgacttt 306  Q
    |||| ||||||| ||||||||||| |||||||| ||||||| |||| | |||||||||||||||  ||| ||||| | |||| | | |||||  ||||||    
T  15835449 gatgaacaagtgtgacaagtcttgtatcatgcagaagctaggtttcgcaattggatcaataaatttcacgattaagtgaaataaaatatgatgcgacttt 15835350  T
Q  307 ttgaactaatg 317  Q
    |||| ||||||    
T  15835349 ttgatctaatg 15835339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 217 - 301
Target Start/End: Complemental strand, 26688819 - 26688736
Alignment:
Q  217 tgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatg 301  Q
    |||||||| ||||||||||||| |||  ||||||||| |||| ||||||||| | |||| |||||||||||||||| || |||||    
T  26688819 tgagacaaatcttgcatcatgcctaaattagttttcatcatttgatcaataact-ccaccattaaattaaatgagatatcatatg 26688736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 56127371 - 56127427
Alignment:
Q  209 tgcacaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaa 265  Q
    |||||||||||||||||||||||| |||||| || || |||||||||||||| ||||    
T  56127371 tgcacaagtgagacaagtcttgcaccatgcacaaacttgttttcaccattggttcaa 56127427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 221 - 308
Target Start/End: Complemental strand, 36159023 - 36158935
Alignment:
Q  221 acaagtcttgcatcatgcataagctagttttcaccattggatcaataa-atcccacaattaaattaaatgagaaatgatatgacttttt 308  Q
    |||||| ||| |||||||| || |||||||| ||||||  ||||| || || |||| ||||||||||||||| ||||| || |||||||    
T  36159023 acaagttttgtatcatgcacaaactagtttttaccattaaatcaacaatattccaccattaaattaaatgaggaatgacataacttttt 36158935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 209 - 281
Target Start/End: Original strand, 51079059 - 51079131
Alignment:
Q  209 tgcacaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaa 281  Q
    ||||||||  ||| |||||||||| |||||| ||| | |||| ||| ||||||||||||||| |||| |||||    
T  51079059 tgcacaagcaagataagtcttgcaccatgcacaaggttgtttccactattggatcaataaattccactattaa 51079131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 218 - 374
Target Start/End: Original strand, 2188700 - 2188856
Alignment:
Q  218 gagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaatg 317  Q
    ||||||| |||||||||||| | ||||||||||  ||| |||||||||||||||  ||||||||||||||||| | ||||||||| ||||| |   |||     
T  2188700 gagacaaatcttgcatcatgtagaagctagtttctacctttggatcaataaatcttacaattaaattaaatgaaatatgatatgattttttaattcaatt 2188799  T
Q  318 gtgcaaaggacacttgtgcatgatgcaagaccattttccttgtgtatgttggacaaa 374  Q
     || |||  ||| |||| ||||| | |||| |||||||||| |||||||| ||||||    
T  2188800 ttggaaaaaacatttgtccatgaagtaagatcattttccttatgtatgttagacaaa 2188856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 212 - 339
Target Start/End: Original strand, 2572263 - 2572391
Alignment:
Q  212 acaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatg-agaaatgatatgactttttga 310  Q
    |||||| |||||| |||||||||||||| ||  ||||||| | ||||||| ||||||||| ||| ||||||||| ||| |||  |||| |||||| ||||    
T  2572263 acaagtaagacaaatcttgcatcatgcaaaatttagttttaaacattggaccaataaatctcacgattaaattatatgaagatgtgatgtgacttattga 2572362  T
Q  311 actaatggtgcaaaggacacttgtgcatg 339  Q
     ||||||||  |||  |||||||||||||    
T  2572363 tctaatggtaaaaaaaacacttgtgcatg 2572391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 13587603 - 13587667
Alignment:
Q  226 tcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatga 290  Q
    ||||||| |||||||||| | ||||  ||||||||||||||||||| ||| |||||||| |||||    
T  13587603 tcttgcaccatgcataaggttgtttctaccattggatcaataaatctcactattaaattgaatga 13587667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 211 - 329
Target Start/End: Complemental strand, 957297 - 957180
Alignment:
Q  211 cacaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttga 310  Q
    |||||||||||||| |||||||| ||| ||||| ||||||| || ||| |||||| ||| | ||| |||||||| ||||||| || || | |||| ||||    
T  957297 cacaagtgagacaaatcttgcattatgtataagttagtttttacaattagatcaa-aaacctcaccattaaatttaatgagatataatgtcacttattga 957199  T
Q  311 actaatggtgcaaaggaca 329  Q
      |||||||  ||||||||    
T  957198 cttaatggtaaaaaggaca 957180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 207 - 315
Target Start/End: Original strand, 39742516 - 39742624
Alignment:
Q  207 gatgcacaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgacttt 306  Q
    ||||| ||||||||||||  | ||||||||| | || |||||||| ||| || |||||||||||||||| |||||||||||||| | |||| |||||||     
T  39742516 gatgcccaagtgagacaaaccctgcatcatgtacaaactagtttttacccttagatcaataaatcccaccattaaattaaatgaaatatgacatgactta 39742615  T
Q  307 ttgaactaa 315  Q
    |||| ||||    
T  39742616 ttgatctaa 39742624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 207 - 297
Target Start/End: Original strand, 46014498 - 46014588
Alignment:
Q  207 gatgcacaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatga 297  Q
    ||||||||||||||| | |||||| |||||| | ||||||||||||| |||| ||||||| ||||| || |||||||| ||||||| ||||    
T  46014498 gatgcacaagtgagatatgtcttgtatcatgtacaagctagttttcatcattagatcaatgaatccaactattaaatttaatgagatatga 46014588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 7890383 - 7890467
Alignment:
Q  219 agacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgac 303  Q
    |||||||| |||||||||||| ||  |||||||||| |||||||||||||||  ||| |||||||||||||| | ||||| ||||    
T  7890383 agacaagtattgcatcatgcacaaagtagttttcactattggatcaataaatttcaccattaaattaaatgaaatatgatgtgac 7890467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 208 - 271
Target Start/End: Original strand, 8041396 - 8041459
Alignment:
Q  208 atgcacaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatc 271  Q
    |||||||| ||| |||||| ||||||||| |||||||||||||||| ||||  |||||||||||    
T  8041396 atgcacaattgaaacaagttttgcatcatacataagctagttttcaacattaaatcaataaatc 8041459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 317
Target Start/End: Complemental strand, 27925454 - 27925348
Alignment:
Q  211 cacaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttga 310  Q
    |||||| ||||||| | ||  ||| |||||||| |||||| |||||||||||||||||||  ||  ||||||| |||||||| ||||| ||| || ||||    
T  27925454 cacaagcgagacaaattttatatcttgcataagttagtttccaccattggatcaataaatttcatgattaaataaaatgagatatgatgtgatttattga 27925355  T
Q  311 actaatg 317  Q
     ||||||    
T  27925354 tctaatg 27925348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 6586876 - 6586936
Alignment:
Q  223 aagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaat 283  Q
    |||| ||| |||||||| || ||| ||||||| ||||||||||||||| ||||||||||||    
T  6586876 aagttttgtatcatgcacaatctaattttcactattggatcaataaataccacaattaaat 6586936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 7890265 - 7890333
Alignment:
Q  219 agacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaa 287  Q
    ||||||||||||||||||||| || ||| |||||||| ||| ||||||||||  ||| | |||||||||    
T  7890265 agacaagtcttgcatcatgcacaaactaattttcacccttgaatcaataaatttcaccactaaattaaa 7890333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 298
Target Start/End: Original strand, 49920309 - 49920368
Alignment:
Q  239 ataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgat 298  Q
    ||||| |||||| ||| |||||||||||||||| ||| ||||||| |||||||| |||||    
T  49920309 ataagttagtttccacaattggatcaataaatcacaccattaaatcaaatgagatatgat 49920368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 7817340 - 7817376
Alignment:
Q  232 atcatgcataagctagttttcaccattggatcaataa 268  Q
    |||||||| |||||||||||||| |||||||||||||    
T  7817340 atcatgcacaagctagttttcacaattggatcaataa 7817376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 212 - 286
Target Start/End: Complemental strand, 37609415 - 37609341
Alignment:
Q  212 acaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaa 286  Q
    ||||||| |||||||||||||||||||||  | | |||| ||||||| ||||| |||||| ||||||||||||||    
T  37609415 acaagtgggacaagtcttgcatcatgcatccgttggtttccaccattagatcattaaatctcacaattaaattaa 37609341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 361
Target Start/End: Complemental strand, 4522418 - 4522266
Alignment:
Q  209 tgcacaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgacttttt 308  Q
    |||| |||| ||| ||||||||||||||||| ||  |||||| || || |||||||||||  | ||| | || || |||||||| |||||  ||||| ||    
T  4522418 tgcaaaagtaagataagtcttgcatcatgcacaaattagtttccatcactggatcaataagcctcaccagtagatcaaatgagatatgatgggacttatt 4522319  T
Q  309 gaactaatggtgcaaaggacacttgtgcatgatgcaagaccattttccttgtg 361  Q
    ||   ||||||| || | ||||||||| |||||||||||| ||||| ||||||    
T  4522318 gattcaatggtgaaaggcacacttgtgaatgatgcaagactattttacttgtg 4522266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 292
Target Start/End: Original strand, 38318054 - 38318137
Alignment:
Q  209 tgcacaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgaga 292  Q
    ||||||| ||| ||||||||||||||||  ||||  ||| |||||| ||| |||||||||||   || ||||||||||||||||    
T  38318054 tgcacaaatgaaacaagtcttgcatcatatataaattagctttcactatttgatcaataaattttaccattaaattaaatgaga 38318137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 226 - 316
Target Start/End: Original strand, 17104575 - 17104665
Alignment:
Q  226 tcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaat 316  Q
    |||||||||||| |||| ||| |||| |  ||| |||||||||||||||  ||| |||||||||| | | ||| ||||||||||| |||||    
T  17104575 tcttgcatcatgtataaactaatttttattatttgatcaataaatcccatcattcaattaaatgaaataagatgtgactttttgatctaat 17104665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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