View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5458-Insertion-5 (Length: 400)
Name: NF5458-Insertion-5
Description: NF5458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5458-Insertion-5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 6 - 400
Target Start/End: Complemental strand, 45380058 - 45379664
Alignment:
| Q |
6 |
caaaatcaacttcactcacactctcaacaggagtgccaattacaggagtttctgcagtcaaattacctgaaaggtcttgactcttccaaagatcctggct |
105 |
Q |
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| T |
45380058 |
caaaatcaacttcactcacactctcaacaggagtgccaattacaggagtttctgcagtcaaattacctgaaaggtcttgactcttccaaagatcctggct |
45379959 |
T |
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| Q |
106 |
cttccccaaatcctggctaaacaagtcaattccaaattcaccctccaccttaatccttgacaaaccaaagtccgagatcttcccgcgaagctcagcatca |
205 |
Q |
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| T |
45379958 |
cttccccaaatcctggctaaacaagtcaactccaaattcaccctccaccttaatccttgacaaaccaaagtccgagatcttcccgcgaaactcagcatca |
45379859 |
T |
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| Q |
206 |
agcaacacattacttggcttaatatcaccatgaatcacaggtggatcacatccaaggtgcaaaaactccaatgctctagcaacatccataattatacaaa |
305 |
Q |
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| T |
45379858 |
agcaacacattacttggcttaatatcaccatgaatcacaggtggatcacatccaaggtgcaaaaactccaatgctctagcaacatccataattatacaaa |
45379759 |
T |
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| Q |
306 |
atcttctctcccaactcaaaccaaaacactcatcaccaaaaagtgactcttgcaagcttgtattaggcatatactcataaaccaaaaccctctta |
400 |
Q |
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| T |
45379758 |
accttctctcccaactcaaaccaaaacactcatcaccaaaaagtgactcttgcaagcttgtattaggcatatactcataaaccaaaaccctctta |
45379664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 12953772 - 12953816
Alignment:
| Q |
212 |
acattacttggcttaatatcaccatgaatcacaggtggatcacat |
256 |
Q |
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| T |
12953772 |
acattactaggtttaatatcaccatgaatcacaggaggattacat |
12953816 |
T |
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