View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5458-Insertion-6 (Length: 340)
Name: NF5458-Insertion-6
Description: NF5458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5458-Insertion-6 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 8 - 340
Target Start/End: Original strand, 7092814 - 7093146
Alignment:
| Q |
8 |
tctgcaataaaatcattagagaaattagtcagctagtattagagcctacaattgttacggtgtaaaagtgttacatatgattttcaagagtaagggagat |
107 |
Q |
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| T |
7092814 |
tctgcaataaaatcattagagaaattagccagctagtattagagcctacaattgctacggtgtaaaagtgttacatatgattttcaagagtaagggagat |
7092913 |
T |
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| Q |
108 |
ttaaagtaaattttgatatatgaggcctttttattggcatatgaggtcttttttgttcgtaggccttaagcgagggctttagtggctttacctttcaacc |
207 |
Q |
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| T |
7092914 |
ttaaagtaaattttgatatatgaggcctttttatcggcatataaggtcttttttgtttgtaggccttaaacgagggttttagtggctttacctttgaacc |
7093013 |
T |
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| Q |
208 |
ggctctgcgtatgatcggttagaccttgtgttagggattactacaaaacttgaacaaatagaagaagataacaatgattgattgtgcataaattttaaaa |
307 |
Q |
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| T |
7093014 |
ggccctgcgtatgatcggttagaacttgtgttagggattactacaaaacttgaacaaatagaagaagataataatgattgattgtgcataaattttaaaa |
7093113 |
T |
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| Q |
308 |
cgtatgtgaatacattgattcgtctccattagt |
340 |
Q |
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| T |
7093114 |
cgtatgtgaacacattgattcatctccattagt |
7093146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 30484177 - 30484230
Alignment:
| Q |
109 |
taaagtaaattttgatatatgaggcc-tttttattggcatatgaggtctttttt |
161 |
Q |
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| T |
30484177 |
taaagcaaattttgatatatgagtccttttttatcggcatatgaggtctttttt |
30484230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 19839470 - 19839427
Alignment:
| Q |
156 |
ttttttgttcgtaggccttaagcgagggctttagtggctttacc |
199 |
Q |
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| T |
19839470 |
ttttttattggtaggcctaaagcgagggctttagtggctttacc |
19839427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 35963965 - 35964005
Alignment:
| Q |
155 |
cttttttgttcgtaggccttaagcgagggctttagtggctt |
195 |
Q |
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| T |
35963965 |
cttttttgttggtaagcctaaagcgagggctttagtggctt |
35964005 |
T |
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