View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5458_high_2 (Length: 543)
Name: NF5458_high_2
Description: NF5458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5458_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 501; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 9 - 529
Target Start/End: Complemental strand, 9788977 - 9788457
Alignment:
| Q |
9 |
aaaatattactaaacttatgccaaacctgaatacaattatttccaagcatgaagtcattaaccatagaaccatagatatagcttgcttgccacttgcaaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9788977 |
aaaatattactaaacttatgccaaacctgaatacaattctttccaagcatgaagtcattaaccatagaaccatagatatagcttgcttgccacttgcaaa |
9788878 |
T |
|
| Q |
109 |
gaaagagctttttagagtaaagtaaggatttcttaacattagcattttcctatatacaatagtaccaacatcaaaattgccaagagatttttcttcagag |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
9788877 |
gaaagagctttttagagtaaagtaaggatttcttaacattagcattttcctatatacaatagtaccaacatcaaaattgccaagagatttttcgtcagag |
9788778 |
T |
|
| Q |
209 |
aaaaaatggttttaaagaaataaaaagcttattcttccctatgtgtgtatatatatacattaacatgtttgctatatgcatagttgtggctctcatctgg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9788777 |
aaaaaatggttttaaagaaataaaaagcttattcttccctatgtgtgtatatatatacattaacatgtttgctatatgcatagttgtggctctcatttgg |
9788678 |
T |
|
| Q |
309 |
atagaattttggttggaatttgtctcctggtttgtggttagagacttgactttgctttctgcgtatggtagttgtagcagtgtctgagttatcctaaggg |
408 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9788677 |
acagaattttggttggaatttgtctcctggtttgtggttagagacttgactttgctttctgcgtatggtagttgtagcagtgtctgagttatcctaaggg |
9788578 |
T |
|
| Q |
409 |
atttagttagcttgcaggactgtcattgtgtttgttttggcttagcctctgtttgggttcttttagcctctctttttgtttcattgggttaaggctttga |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9788577 |
atttagttagcttgcaggactgtcattgtgtttgttttggcttagcctttgtttgggttcttttagcctctctttttgtttcattgggttaaggctttga |
9788478 |
T |
|
| Q |
509 |
gtccccccaattgttctttgt |
529 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
9788477 |
gtccccccaattgttctttgt |
9788457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 135 - 371
Target Start/End: Original strand, 3587547 - 3587782
Alignment:
| Q |
135 |
gatttcttaacattagcattttcctatatacaatagtaccaacatcaaaattgccaagagatttttcttcagagaaaaaatggttttaaagaaat-aaaa |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||| |||||||||||||||||| |||||||| |||| |
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|
| T |
3587547 |
gatttcttaacattagcattttcctatatacaatagcaccaacatcaaaattgctaagaaatttttcgtcagagaaaaaatggtttcaaagaaataaaaa |
3587646 |
T |
|
| Q |
234 |
agcttattcttccctatgtgtgtatatatatacattaacatgtttgctatatgcatagttgtggctctcatctggatagaattttggttggaatttgtct |
333 |
Q |
| |
|
| ||||||||||| ||||||||| ||||||| ||||| |||||||||||| | ||||||||||||||||| || | ||||||||||||||||||| | | |
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|
| T |
3587647 |
accttattcttccttatgtgtgtgtatatat--attaatatgtttgctatagggatagttgtggctctcatttgaacagaattttggttggaatttattt |
3587744 |
T |
|
| Q |
334 |
cctggtttgtggttagagacttgactttgctttctgcg |
371 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |
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|
| T |
3587745 |
cctggtttatggttagagacttgactttgctttctgcg |
3587782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 387 - 525
Target Start/End: Original strand, 3589193 - 3589330
Alignment:
| Q |
387 |
agtgtctgagttatcctaagggatttagttagcttgcaggactgtcattgtgtttgttttggcttagcctctgtttgggttcttttagcctctctttttg |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
3589193 |
agtgtctgagttatcctaagggatttagttagcttgcaggactgtcattgtgtttgttttggcttagcctttgtttgggttcttttagcctctctttttg |
3589292 |
T |
|
| Q |
487 |
tttcattgggttaaggctttgagtccccccaattgttct |
525 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
3589293 |
tctcattgggttaaggc-ttgagtccccccaattgttct |
3589330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 136 - 525
Target Start/End: Original strand, 44505350 - 44505739
Alignment:
| Q |
136 |
atttcttaacattagcattttcctatatacaatagtaccaacatcaaaattgccaagagatttttcttcagagaaaaaatggttttaaagaaataaaaag |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||| | |||||||||||||||||||||||||||||| |
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|
| T |
44505350 |
atttcttaacattagcattttcctatatacaatagcaccaacatcaaaattgctaagaaatttttcgttagagaaaaaatggttttaaagaaataaaaac |
44505449 |
T |
|
| Q |
236 |
cttattcttccctatgtgtgtatatatatacattaacatgtttgctatatgcatagttgtggctctcatctggatagaattttggttggaatttgtctcc |
335 |
Q |
| |
|
||||||||||| ||||||||| | |||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||| |
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|
| T |
44505450 |
cttattcttccttatgtgtgtgtgtatatatattaacatgtttgctatatggatagttgtggctctcatctggacagaattttggttagaatttgtctcc |
44505549 |
T |
|
| Q |
336 |
tggtttgtggttagagacttgactttgctttctgcgtatggtagttgtagcagtgtctgagttatcctaagggatttagttagcttgcaggactgtcatt |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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|
| T |
44505550 |
tggtttgtggttagagacttgactttgctttctgcgtatggtagttgtagcagtgtctgagttatcctaagggatttagttagcttgcagaactaccatt |
44505649 |
T |
|
| Q |
436 |
gtgtttgttttggcttagcctctgtttgggttcttttagcctctctttttgtttcattgggttaaggctttgagtccccccaattgttct |
525 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||| |
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|
| T |
44505650 |
gtgtttgttttggcttagcctttgtttgggttcttttagccgctctttttgtttcattggcttaaggctttgagtccccccaactgttct |
44505739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 222 - 525
Target Start/End: Complemental strand, 10013631 - 10013329
Alignment:
| Q |
222 |
aaagaaataaaaagcttattcttccctatgtgtgtatatatatacattaacatgtttgctatatgcatagttgtggctctcatctggatagaattttggt |
321 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| ||| |||||||| ||||||||||||||||| | ||| ||||||||||||| |||| ||||||||||| |
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|
| T |
10013631 |
aaagaaataaaaatcttattcttccttatgtatgtgtatatatatattaacatgtttgctattgggataattgtggctctcatttggacagaattttggt |
10013532 |
T |
|
| Q |
322 |
tggaatttgtctcctggtttgtggttagagacttgactttgctttctgcgtatggtagttgtagcagtgtctgagttatcctaagggatttagttagctt |
421 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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|
| T |
10013531 |
tggaatttgtctcctggtttgtagttagagacttgactttgctttctgcgtatggtagttgtagcagtgtctgagttatcctaatggattcagttagctt |
10013432 |
T |
|
| Q |
422 |
gcaggactgtcattgtgtttgttttggcttagcctctgtttgggttcttttagcctctctttttgtttcattgggttaaggctttgagtccccccaattg |
521 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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|
| T |
10013431 |
gcaggactgtcattgtgtttgttttggcttagcctttgtttgggttcttttagcctctctttttgtctcattgggttaaggc-ttgagtccccccaattg |
10013333 |
T |
|
| Q |
522 |
ttct |
525 |
Q |
| |
|
|||| |
|
|
| T |
10013332 |
ttct |
10013329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 222 - 525
Target Start/End: Complemental strand, 10020772 - 10020470
Alignment:
| Q |
222 |
aaagaaataaaaagcttattcttccctatgtgtgtatatatatacattaacatgtttgctatatgcatagttgtggctctcatctggatagaattttggt |
321 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| ||| |||||||| ||||||||||||||||| | ||| ||||||||||||| |||| ||||||||||| |
|
|
| T |
10020772 |
aaagaaataaaaatcttattcttccttatgtatgtgtatatatatattaacatgtttgctattgggataattgtggctctcatttggacagaattttggt |
10020673 |
T |
|
| Q |
322 |
tggaatttgtctcctggtttgtggttagagacttgactttgctttctgcgtatggtagttgtagcagtgtctgagttatcctaagggatttagttagctt |
421 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
10020672 |
tggaatttgtctcctggtttgtagttagagacttgactttgctttctgcgtatggtagttgtagcagtgtctgagttatcctaatggattcagttagctt |
10020573 |
T |
|
| Q |
422 |
gcaggactgtcattgtgtttgttttggcttagcctctgtttgggttcttttagcctctctttttgtttcattgggttaaggctttgagtccccccaattg |
521 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
10020572 |
gcaggactgtcattgtgtttgttttggcttagcctttgtttgggttcttttagcctctctttttgtctcattgggttaaggc-ttgagtccccccaattg |
10020474 |
T |
|
| Q |
522 |
ttct |
525 |
Q |
| |
|
|||| |
|
|
| T |
10020473 |
ttct |
10020470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 135 - 234
Target Start/End: Complemental strand, 10013746 - 10013647
Alignment:
| Q |
135 |
gatttcttaacattagcattttcctatatacaatagtaccaacatcaaaattgccaagagatttttcttcagagaaaaaatggttttaaagaaataaaaa |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10013746 |
gatttcttaacattagcattttcctatatacaatagcaccaacatcaaaattgctaagaaatttttcgtcagagaaaaaatggttttaaagaaataaaaa |
10013647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 135 - 234
Target Start/End: Complemental strand, 10020887 - 10020788
Alignment:
| Q |
135 |
gatttcttaacattagcattttcctatatacaatagtaccaacatcaaaattgccaagagatttttcttcagagaaaaaatggttttaaagaaataaaaa |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10020887 |
gatttcttaacattagcattttcctatatacaatagcaccaacatcaaaattgctaagaaatttttcgtcagagaaaaaatggttttaaagaaataaaaa |
10020788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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