View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5458_high_4 (Length: 356)
Name: NF5458_high_4
Description: NF5458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5458_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 341
Target Start/End: Complemental strand, 38399137 - 38398825
Alignment:
| Q |
17 |
atgaattggttccacactaaaggaaatatcaattgataatacttccccttttccatttgtgtataccttcttcatagaaaaggtcaaatctaggataaac |
116 |
Q |
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| T |
38399137 |
atgaatcggttccacactaaaggaaatatcaattgataatacttcccctttgtcatttgtgtataccttcttcatagaaaaggtcaaatctaggataaac |
38399038 |
T |
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| Q |
117 |
taagacaaaatgtcaagttaggagaaataaggtgactttgtgttttaatcttgattatgcatgcatgtgttgttggtagaaaagagactattaattcaac |
216 |
Q |
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| T |
38399037 |
taagacaaaatgtcaagttaggagaaataaggtgactttgtgttttaatcttgattatgcatgcatgtgttgttggtagaaaagagactat--------- |
38398947 |
T |
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| Q |
217 |
tacttgttatattttctgataatttatcactttctatttgatcccattggaacgattaattttgtttttcatgccttgtaggttatgttggcattaaatt |
316 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38398946 |
tacttgtcatattttctg---atttatcactttctatttgatcccattggaatgattaattttgtttttcatgccttgtagattatgttggcattaaatt |
38398850 |
T |
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| Q |
317 |
tgaggaccaatgtgttaatatttct |
341 |
Q |
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| T |
38398849 |
tgaggaccaatgtgttaatatttct |
38398825 |
T |
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