View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5458_low_1 (Length: 647)
Name: NF5458_low_1
Description: NF5458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5458_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 606; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 18 - 631
Target Start/End: Complemental strand, 5401495 - 5400882
Alignment:
| Q |
18 |
attgatttcaagggaacatcaatgccggaaaccaggagttataatttcacaaaaacgaaattatagtaaaatttgctaattttgggcttggtatgaaatc |
117 |
Q |
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| T |
5401495 |
attgatttcaagggaacatcaatgccggaaaccaggagttataatttcacagaaacgaaattatagtaaaatttgctaattttgggcttggtatgaaatc |
5401396 |
T |
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| Q |
118 |
gtgagttaaattattggggtagtgtctgtttgaaattatatgatatgatatgattgattaagcattgtactgcaacttagattccaattaaaagtggtac |
217 |
Q |
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| T |
5401395 |
gtgagttaaattattggggtagtgtctgtttgaaattatatgatatgatatgattgattaagcattgtactgcaacttagattccaattaaaagtggtac |
5401296 |
T |
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| Q |
218 |
atgtcctaccaaacatgctttttatgaatcaactgaacctagggaaaatatcacactaacaatagaagacactactagtactctctaactataactagca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5401295 |
atgtcctaccaaacatgctttttatgaatcaactgaacctagggaaaatatcacactaacaatagaagacactactagtactctctaactataactagca |
5401196 |
T |
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| Q |
318 |
gtaggtcctaataattttggaatgcaggtgttagtactcaacaacctcatgtcctttgtggaaccaaatttgacacgaggagctggtttcttaagctgtt |
417 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5401195 |
gtaggtcctaataattttggcatgcaggtgttagtactcaacaacctcatgtcctttgtggaaccaaatttgacacgaggagctggtttcttaagctgtt |
5401096 |
T |
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| Q |
418 |
cttagaattgaataaggacactacttgtacagttatgcacacacgatcacaaacatcttttacggtgaaaaaagcttaacttctcctcgattaggataac |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5401095 |
cttagaattgaataaggacactacttgtacagttatgcacacacgatcacaaacatcttttacggtgaaaaaagcttaacttctcctcgattaggataac |
5400996 |
T |
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| Q |
518 |
tcaaaacccagattccccagcttaaagaaaacaactagaaccccactatatatagtaactttttggtttttgttaaaaaatgcactatcttactagaatc |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5400995 |
tcaaaacccagattccccagcttaaagaaaacaactagaaccccactatatatagtaactttttggtttttgttaaaaaatgcactatcttactagaatc |
5400896 |
T |
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| Q |
618 |
aatgctaggttcat |
631 |
Q |
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| T |
5400895 |
aatgctaggttcat |
5400882 |
T |
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