View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5458_low_6 (Length: 350)
Name: NF5458_low_6
Description: NF5458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5458_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 24 - 332
Target Start/End: Complemental strand, 45380360 - 45380052
Alignment:
| Q |
24 |
atcttctccccattgtttcccattttccttctcttcatcaaccaaacaagcatccttactataatcagtgctacagaactcatcatcataaggaacaaac |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45380360 |
atcttctccccattgtttcccattttccttctcttcatcaaccaaataagcatccttactataatcagtgctacagaactcatcatcataaggaacaaac |
45380261 |
T |
|
| Q |
124 |
ttattagtattccaacaatcatcccctcctccacctcctcctgtatccaaacttgaaatttccttaccctttgcatttacattcctactttcactttcac |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45380260 |
ttattagtattccaacaatcatcccctcctccacctcctcctgtatccaaacttgaaatttccttaccctttgcatttacattcctactttcactttcac |
45380161 |
T |
|
| Q |
224 |
caacaatatttgcattataattcaaagagttcaagttcaaagctttaacatttaaacaactcctactatttttggatgaagtagaagcttgcaaagcaag |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45380160 |
caacaatatttgcattataattcaaagagttcaagttcaatgctttaacatttaaacaactcctactatttttggatgaagtagaagcttgcaaagcaag |
45380061 |
T |
|
| Q |
324 |
agcaaaatc |
332 |
Q |
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||||||||| |
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| T |
45380060 |
agcaaaatc |
45380052 |
T |
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