View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5459-Insertion-1 (Length: 972)

Name: NF5459-Insertion-1
Description: NF5459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5459-Insertion-1
NF5459-Insertion-1
[»] chr2 (4 HSPs)
chr2 (8-225)||(4985034-4985252)
chr2 (414-602)||(4984628-4984816)
chr2 (639-920)||(4984302-4984591)
chr2 (290-340)||(4984925-4984975)
[»] chr1 (2 HSPs)
chr1 (639-674)||(4280190-4280225)
chr1 (642-675)||(24964164-24964197)
[»] chr8 (1 HSPs)
chr8 (642-676)||(10705505-10705539)
[»] chr6 (1 HSPs)
chr6 (642-676)||(21771023-21771057)
[»] chr5 (1 HSPs)
chr5 (642-676)||(14609798-14609832)
[»] chr4 (1 HSPs)
chr4 (642-675)||(50426914-50426947)


Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 4985252 - 4985034
Alignment:
Q  8 gttaattcgttaatctgttgagagaaatatatttaaggtaactgataactaaaacaagacccaaaatagatgtaatgtataaaaatagtgaaaacaaaga 107  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4985252 gttaattcgttaatctgttgagagagatatatttaaggtaactgataactaaaacaagacccaaaatagatgtaatgtataaaaatagtgaaaataaaga 4985153  T
Q  108 tatgaatatggggaatgcattgatgtgtggatttatgagatcagatattatagttgttatgtttaact--gcctaagttaagcaaataaatggatggatt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||    
T  4985152 tatgaatatggggaatgcattgatgtgtggatttatgagatcagatattatagttgttatgtttaactgcgcctaagttaagcaaataaaaggatggatt 4985053  T
Q  206 ggctataatttgtgtttatt 225  Q
    |||||||| |||||||||||    
T  4985052 ggctataa-ttgtgtttatt 4985034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 177; E-Value: 7e-95
Query Start/End: Original strand, 414 - 602
Target Start/End: Complemental strand, 4984816 - 4984628
Alignment:
Q  414 aaaccatctgatacatctgatgagtactagctgaatcatacaaggcacacaacaccgtttgatacaatcatatacattaatagcgagtacacgaaataag 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4984816 aaaccatctgatacatctgatgagtactagctgaatcatacaaggcacacgacaccgtttgatacaatcatatacattaatagcgagtacacgaaataag 4984717  T
Q  514 attgtaacaaagtacatagtacataatatctagcagcaaaatgctaaaatctgacgacgcgcataatcatcatgtctcaccccaatccc 602  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4984716 attgtaacaaagtacatagtacataatatctaacagcaaaatgctaaaatctgacgacgcgcataatcatcacgtctcaccccaatccc 4984628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 639 - 920
Target Start/End: Complemental strand, 4984591 - 4984302
Alignment:
Q  639 gaaccttaattgattaatgatcaaattaagtaataaaaatannnnnnn-aattggacaattaattaaatgtttaattaattcatagc---------tgag 728  Q
    ||||||||||||||||| ||| |||||||||||||||||||        |||||||||||||||||||||||||||||||||||| |         ||||    
T  4984591 gaaccttaattgattaacgattaaattaagtaataaaaatattttttttaattggacaattaattaaatgtttaattaattcatatcagatcaacatgag 4984492  T
Q  729 tgtatgtctgaattatccattttcgaataatgagatcctacttggccatcatacatcaatataagccgaaggattttcagttgatttggcgat-aaaact 827  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4984491 tgtatgtctgaattatccattttcgaataatgggaccctacttggccatcatacatcaatataagccgaaggattttcagttgatttggcgataaaaact 4984392  T
Q  828 attcaatttagccttatttataagagacatttacgtcaataaaatttcttaagtcttc-aagagtatg-aaaatgagtatccctaaaatttcttt 920  Q
    | ||||||||| ||||||||||||||||    |||| ||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||    
T  4984391 actcaatttagtcttatttataagagac----acgttaataaaatttcttaagtcttcaaagagtatgaaaaatgagtatccc-aaaatttcttt 4984302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 290 - 340
Target Start/End: Complemental strand, 4984975 - 4984925
Alignment:
Q  290 ttttcaatgccaaatgtaacacccatactaaattgattataatatttagac 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4984975 ttttcaatgccaaatgtaacacccatactaaattgattataatatttagac 4984925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 639 - 674
Target Start/End: Complemental strand, 4280225 - 4280190
Alignment:
Q  639 gaaccttaattgattaatgatcaaattaagtaataa 674  Q
    |||||||||||||||| |||||||||||||||||||    
T  4280225 gaaccttaattgattagtgatcaaattaagtaataa 4280190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 642 - 675
Target Start/End: Complemental strand, 24964197 - 24964164
Alignment:
Q  642 ccttaattgattaatgatcaaattaagtaataaa 675  Q
    ||||||||||||| ||||||||||||||||||||    
T  24964197 ccttaattgattagtgatcaaattaagtaataaa 24964164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 642 - 676
Target Start/End: Original strand, 10705505 - 10705539
Alignment:
Q  642 ccttaattgattaatgatcaaattaagtaataaaa 676  Q
    ||||||||||||| |||||||||||||||||||||    
T  10705505 ccttaattgattagtgatcaaattaagtaataaaa 10705539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 642 - 676
Target Start/End: Complemental strand, 21771057 - 21771023
Alignment:
Q  642 ccttaattgattaatgatcaaattaagtaataaaa 676  Q
    ||||||||||||| |||||||||||||||||||||    
T  21771057 ccttaattgattagtgatcaaattaagtaataaaa 21771023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 642 - 676
Target Start/End: Original strand, 14609798 - 14609832
Alignment:
Q  642 ccttaattgattaatgatcaaattaagtaataaaa 676  Q
    ||||||||||||| |||||||||||||||||||||    
T  14609798 ccttaattgattagtgatcaaattaagtaataaaa 14609832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 642 - 675
Target Start/End: Original strand, 50426914 - 50426947
Alignment:
Q  642 ccttaattgattaatgatcaaattaagtaataaa 675  Q
    ||||||||||||| ||||||||||||||||||||    
T  50426914 ccttaattgattagtgatcaaattaagtaataaa 50426947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University