View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5459-Insertion-2 (Length: 963)
Name: NF5459-Insertion-2
Description: NF5459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5459-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 233
Target Start/End: Original strand, 56276207 - 56276429
Alignment:
| Q |
8 |
tttcttacatatacaactaataaaatcacaccacatagatattttaggaactaaccaataaaaatattgtcactattgtgtgatttggttggatatgtaa |
107 |
Q |
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| T |
56276207 |
tttcttacatatacaactaataaaatcacaccacacagatattttaggaactaaccaataaaaat---gtcactattgtgtgatttggttggatatgtaa |
56276303 |
T |
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| Q |
108 |
aaacattacattgttaatgcacaaaaattgatctcggtattaattgtcgttttagcttaaaattttgtagtaatattttgataaaaacctcaaaatgcac |
207 |
Q |
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| T |
56276304 |
aaacattacattgttaatgcacaaaaattgatctcggtattaattgtcgttttagcttaaaattttgtagtaatatttttataaaaacctcaaaatgcac |
56276403 |
T |
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| Q |
208 |
ttaacattattttcatttattgatgg |
233 |
Q |
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| T |
56276404 |
ttaacattattttcatttattgatgg |
56276429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 326 - 529
Target Start/End: Original strand, 56276608 - 56276805
Alignment:
| Q |
326 |
agtattctgcaagccaaacctttccattttgtagtaatggagtagtggctaggtagg-taggtagctaagagaaacacagtttgctgacctaaacgacaa |
424 |
Q |
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| T |
56276608 |
agtattctgcaagccaaatctttccattttgtagtaatggagtagtggctaggcggactaggtagctaagagaaacacagtttgctgacctaaacgacaa |
56276707 |
T |
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| Q |
425 |
aactatcgcattcctcttctattgcttgtactcttattacttcttcattaagttttactacnnnnnnnnnnnnnatttatggactaatattttctactaa |
524 |
Q |
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| T |
56276708 |
aactatcgcattcctcttctattgcttgtactcttattacttcttcattaagttttactactttttt-------atttatggactaatattttctactaa |
56276800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 613 - 682
Target Start/End: Original strand, 56276875 - 56276943
Alignment:
| Q |
613 |
attttgtaacttgtataaatcacaacaaattaaaatttttaaaaatgaaactagacaaggagtgattggt |
682 |
Q |
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| T |
56276875 |
attttgtaacttgtataaatcacaacaaatt-aaattttttaaaatcaaactagacaaggagtgattggt |
56276943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 890 - 963
Target Start/End: Original strand, 56277231 - 56277304
Alignment:
| Q |
890 |
gaagaagttgcttaaggttgagaatgatgagattgaggaggggtctctgaacagagacgtaatctctcatattc |
963 |
Q |
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| T |
56277231 |
gaagaagattcttaaggttgatagtgatgagagtgaggagggttctctcaacagagacgtcatctctcatattc |
56277304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 770 - 804
Target Start/End: Original strand, 56277045 - 56277079
Alignment:
| Q |
770 |
cacacacaacgcactgtgtatgagtttgttacata |
804 |
Q |
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| T |
56277045 |
cacacacaacgcaccgtgtatgagtttgttacata |
56277079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 56276470 - 56276503
Alignment:
| Q |
232 |
ggatatatacgcgtttgttattttgctttgaaat |
265 |
Q |
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| T |
56276470 |
ggatatatacgcgtttgttattttgttttgaaat |
56276503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 742 - 771
Target Start/End: Original strand, 56276995 - 56277024
Alignment:
| Q |
742 |
gtatttgtttctagttatgccaaaacggca |
771 |
Q |
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| T |
56276995 |
gtatttgtttctagttatgccaaaacggca |
56277024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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