View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5459-Insertion-3 (Length: 905)
Name: NF5459-Insertion-3
Description: NF5459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5459-Insertion-3 |
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Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 449 - 901
Target Start/End: Complemental strand, 34859414 - 34858974
Alignment:
| Q |
449 |
tttttacaaaaggattgaaattgaattgtactcttttattgaccatgcacacctttatcgaatgtgggaaattgaaaattaaacctttgtttggtaagta |
548 |
Q |
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| T |
34859414 |
tttttacaaaaggattgaaattgaattgtactcttttattgaccatgcacacctttatcgaatgtgggaaattgaaaattaaacctttgtttggtaagta |
34859315 |
T |
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| Q |
549 |
agtaaactaaaaatgtgagcatgtgaagacttatcatgtcaacgaggttggtctcaactctgagaaatccaattaatattgagcccagctagttcctatt |
648 |
Q |
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| T |
34859314 |
agtaaactaaaaatgtgagcatgtgaagacttatcatgtcaacgaggttggtctcaactctgagaaatccaattaatattgagcccagctagttcctatt |
34859215 |
T |
|
| Q |
649 |
tttgttttattcaaaaatcaacatcagcaaaaagagcttattgaaaatatcacatcttaaaatggtccacattttttcaatgaattatttgtactatata |
748 |
Q |
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| T |
34859214 |
tttgttttattcaaaaatcaacatcagcaaaaagagcttattgaaaatatcacatcttaaaatggtccacattttttcaatga---atttg---tatata |
34859121 |
T |
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| Q |
749 |
atgtggatgtggatatatggctagccaacataatcaatgaatgccacccatttgtgtgatttctgtctgtca-ttcaacttggcattggcattggcattg |
847 |
Q |
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| T |
34859120 |
atgtggatgtggatatatggctagccaacataatcaatgaatgccacccatttgtgtgatttctgtctgtcatttcaacttggcattggcattggc---- |
34859025 |
T |
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| Q |
848 |
gcattggcccctcaaa--ctaaatctctttcatattctcttttt-cacacactttca |
901 |
Q |
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| T |
34859024 |
------ccccctcaaaacctaaatctctttcatattctctttttccacacactttca |
34858974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 34860030 - 34859815
Alignment:
| Q |
8 |
gtaggtgcatatctgaaactcaccagatgtgtgttactccaacggagttcatacgtaggaagctagatgtttttgaagatccttattgctcgtcttctgt |
107 |
Q |
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| T |
34860030 |
gtaggtgcatatctgaaactcaccagatgtgtgttactccaacggagttcatacgtaggaagctagatgtttttgaagatccttattgctcgtcttctgt |
34859931 |
T |
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| Q |
108 |
gtttcttctttaatttacaaagtcctggaaaagtagaagatggaagccacttcaataacacaaatgttgaagggtttttgtgatactatctatctatgca |
207 |
Q |
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| T |
34859930 |
gtttcttctttaatttacaaagtcctggaaaagtagaagatggaagccacttcaataacacaaatgttgaagggtttttgtgatactatctatctatgca |
34859831 |
T |
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| Q |
208 |
atggttatcagtatgt |
223 |
Q |
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| T |
34859830 |
atggttatcaatatgt |
34859815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 34859559 - 34859449
Alignment:
| Q |
345 |
atcagtgagatttaatgatattctgggaagaaatttgttttatattctaaattgggtttgaaccggattcaacctgaattaaaatcaattctacaaataa |
444 |
Q |
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| T |
34859559 |
atcagtgagatttaatgatattctgggaagaaatttgttttatattctaaattgggtttgaaccggattcaacctgaattaaaatcaattctacaaataa |
34859460 |
T |
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| Q |
445 |
ttcgtttttac |
455 |
Q |
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| T |
34859459 |
ttcgtttttac |
34859449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 34859795 - 34859723
Alignment:
| Q |
200 |
tctatgcaatggttatcagtatgttaagacgagttgaagattaaagccaatccaatgacacaattgttgaagg |
272 |
Q |
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| T |
34859795 |
tctatgaaatggttatcagtatgttaagacgagttgaagattaaagccaatccaatgacacaattgttgaagg |
34859723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 270 - 326
Target Start/End: Complemental strand, 34859640 - 34859584
Alignment:
| Q |
270 |
aggatagttatatgattgtctttctatgaatttcgttacaaatattctatgacaaca |
326 |
Q |
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| T |
34859640 |
aggatagttatatgattgtctttctatgaatttcgttacaaatattctatgacaaca |
34859584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 23133073 - 23132979
Alignment:
| Q |
105 |
tgtgtttcttctttaatttac---aaagtcctggaaaagtagaagatggaagccacttcaataacacaaatgttgaagggtttttgtgatactat |
196 |
Q |
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| T |
23133073 |
tgtgtttcttgtttattttaccgaaaagtcgtgcaaaagtagaagatggaagctacttcaattacacaattgttgaagggcttttgtgatactat |
23132979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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