View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5459-Insertion-5 (Length: 895)

Name: NF5459-Insertion-5
Description: NF5459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5459-Insertion-5
NF5459-Insertion-5
[»] chr1 (5 HSPs)
chr1 (220-895)||(5229149-5229811)
chr1 (100-172)||(5229022-5229094)
chr1 (8-84)||(5228949-5229025)
chr1 (104-172)||(34596110-34596180)
chr1 (605-687)||(7344394-7344476)
[»] chr2 (4 HSPs)
chr2 (573-703)||(17124351-17124482)
chr2 (804-895)||(17124567-17124658)
chr2 (120-172)||(11364684-11364738)
chr2 (104-172)||(34356552-34356621)
[»] chr6 (2 HSPs)
chr6 (243-316)||(29204219-29204293)
chr6 (103-156)||(31702729-31702784)
[»] chr8 (2 HSPs)
chr8 (610-680)||(5450752-5450822)
chr8 (109-172)||(6270364-6270429)
[»] chr5 (2 HSPs)
chr5 (613-687)||(8142410-8142484)
chr5 (254-319)||(37510257-37510322)
[»] chr3 (1 HSPs)
chr3 (263-315)||(39450848-39450901)


Alignment Details
Target: chr1 (Bit Score: 495; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 220 - 895
Target Start/End: Original strand, 5229149 - 5229811
Alignment:
Q  220 aaagagtgctccggaagcacttgttaaaataagacatatcatcatattttagataaaatattttatggaaaaccaaaattgttaaattttaaaataagga 319  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||              ||||||||||||||||| |||||||||||||||||    
T  5229149 aaagagtgctccgggagcactcgttaaaataagacatatcatcatatttta--------------tggaaaaccaaaattgtcaaattttaaaataagga 5229234  T
Q  320 gattattgactagatgagatgtttaggtttcgaaccccaacatctctcaataacatgcaatggacagctttctttattttcta-ttatatgaaaataaat 418  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5229235 gattattgactaaatgagatgtctaggtttcgaaccccaacatctctgaataacatgcaatggacagctttctttattttctaattatatgaaaataaat 5229334  T
Q  419 attagcatatagtagtagtatagcaccttaatttttttaagnnnnnnnnnnn---ctgtatcccatatctgtatctatacaacatagatttatcttatgc 515  Q
    |||||||||||||||||   ||| |||||||||||||||||              |||||||||||||||||||||||||||||||||||||||||||||    
T  5229335 attagcatatagtagta---tagtaccttaatttttttaagaaataaaaaaaaaactgtatcccatatctgtatctatacaacatagatttatcttatgc 5229431  T
Q  516 aatgtcttggatttgagtcttgtgtacataagttttcccgctaaaaattcatcaaatatgtttcttaatgcagatgtggccagacttatttcaaaaggct 615  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5229432 aatgtcttggatttgagtcttgtgtacataatttttcccgctaaaaattcatcaaatatgtttcttaatgcagatgtggccagacttatttcaaaaggct 5229531  T
Q  616 aaagatggaggccttgatgttattcaaacatatgtattttggaatggacatgagccttctcctggaaatgtaatgaagatatttatttccatgaatggtg 715  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5229532 aaagatggaggccttgatgttattcaaacatatgtattttggaatggacatgagccttctcctggaaatgtaatgaagatatttatttccatgaattgtg 5229631  T
Q  716 cttcaattcaatttctatataaatagaccttttagttgnnnnnnnattaatgttttttactcattcaagtttcatacaatgttgaaaattttcagtatta 815  Q
    ||||||||||||||||||||||||||||| ||| ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5229632 cttcaattcaatttctatataaatagaccctttggttgtttttttattaatgttttttactcattcaagtttcatacaatgttgaaaattttcagtatta 5229731  T
Q  816 cttcgaagatagatttgacttggtaaagtttgtcaagctagcacagcaagctggtctttatgttcacttgcgtattggtc 895  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5229732 cttcgaagatagatttgacttggtaaagtttgtcaagctagcacaacaagctggtctttatgttcacttgcgtattggtc 5229811  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 5229022 - 5229094
Alignment:
Q  100 cgaggacactctttaagatttttaaatggtaactttttataaaaatgtgtaatcaataaattgaaaatcgaaa 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  5229022 cgaggacactctttaagatttttaaatggtaactttttataaaaatgtgtaattaatacattgaaaatcgaaa 5229094  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 5228949 - 5229025
Alignment:
Q  8 acatgatctgatgataagnnnnnnnntcaacttgtaagaaaccttcccttaaaaacttcatcgaaaatattaacgag 84  Q
    ||||||||||||||||||        ||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  5228949 acatgatctgatgataagaaaaaaaatcaacttgtaagaaagcttcccttaaaaacttgatcgaaaatattaacgag 5229025  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 34596110 - 34596180
Alignment:
Q  104 gacactctttaagatttttaaatggtaactttttataaaa--atgtgtaatcaataaattgaaaatcgaaa 172  Q
    ||||||||||||||  |||||||| ||||||||||| |||  |||||||||||||  ||||||||||||||    
T  34596110 gacactctttaagacctttaaatgataactttttatgaaattatgtgtaatcaatgcattgaaaatcgaaa 34596180  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 605 - 687
Target Start/End: Original strand, 7344394 - 7344476
Alignment:
Q  605 ttcaaaaggctaaagatggaggccttgatgttattcaaacatatgtattttggaatggacatgagccttctcctggaaatgta 687  Q
    ||||||| || |||||||||||  | ||||||||| | || ||||| ||||||||||  ||||| ||||||||||| ||||||    
T  7344394 ttcaaaaagcaaaagatggagggttagatgttattgatacttatgtgttttggaatgttcatgaaccttctcctggcaatgta 7344476  T

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Target: chr2 (Bit Score: 64; Significance: 2e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 573 - 703
Target Start/End: Original strand, 17124351 - 17124482
Alignment:
Q  573 atgtttcttaatgcagatgtggccagacttatttcaaaaggctaaagatggaggccttgatgttattcaaacatatgtattttggaatggacatgagcct 672  Q
    |||||| || ||||||||||||||||| ||| | ||||||||||||||||||||  ||||||| ||| |||| ||||||||||||||||||||||| |||    
T  17124351 atgtttgttgatgcagatgtggccagatttaatacaaaaggctaaagatggaggtgttgatgtgattgaaacctatgtattttggaatggacatgaacct 17124450  T
Q  673 tctcctggaaatgtaatgaa-gatatttattt 703  Q
    ||||  ||||| ||||| || |||||||||||    
T  17124451 tctcaaggaaaagtaataaatgatatttattt 17124482  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 804 - 895
Target Start/End: Original strand, 17124567 - 17124658
Alignment:
Q  804 ttttcagtattacttcgaagatagatttgacttggtaaagtttgtcaagctagcacagcaagctggtctttatgttcacttgcgtattggtc 895  Q
    ||||||||||||||| |||||||||||||||||||| |||||  ||||  | |  || |||||||| ||||||||||| |||||||||||||    
T  17124567 ttttcagtattactttgaagatagatttgacttggttaagttcatcaaagtggttcaacaagctggactttatgttcatttgcgtattggtc 17124658  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 11364738 - 11364684
Alignment:
Q  120 tttaaatggtaactttttataaaaa--tgtgtaatcaataaattgaaaatcgaaa 172  Q
    |||||||||||||||||||||||||  ||| ||||||||||||| ||||| ||||    
T  11364738 tttaaatggtaactttttataaaaatttgtataatcaataaattaaaaattgaaa 11364684  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 34356552 - 34356621
Alignment:
Q  104 gacactctttaagatttttaaatggtaactttttataaaa--atgtgtaatcaataaattgaaaatcgaaa 172  Q
    |||||||||||||||||||||||  ||| |||||||||||  |||| ||||||||| ||||||||| ||||    
T  34356552 gacactctttaagatttttaaataataa-tttttataaaaacatgtataatcaatacattgaaaattgaaa 34356621  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 243 - 316
Target Start/End: Complemental strand, 29204293 - 29204219
Alignment:
Q  243 ttaaaataagacatatcatcatattttagataaaatattttatgga-aaaccaaaattgttaaattttaaaataa 316  Q
    |||||||| | ||||||| |||||||||||| |||||||| || || |||  |||||||||||||||||||||||    
T  29204293 ttaaaatatgtcatatcaacatattttagattaaatatttaatagataaattaaaattgttaaattttaaaataa 29204219  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 31702729 - 31702784
Alignment:
Q  103 ggacactctttaagatttttaaatggtaactttttataaaa--atgtgtaatcaat 156  Q
    ||||||||||||||||  |||||| ||||||||||||||||  |||||||||||||    
T  31702729 ggacactctttaagatccttaaatagtaactttttataaaaatatgtgtaatcaat 31702784  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 610 - 680
Target Start/End: Original strand, 5450752 - 5450822
Alignment:
Q  610 aaggctaaagatggaggccttgatgttattcaaacatatgtattttggaatggacatgagccttctcctgg 680  Q
    ||||||||||| |||||  | ||||| |||||||| ||||| || |||||||||||||| ||||| |||||    
T  5450752 aaggctaaagaaggaggattggatgtgattcaaacctatgttttctggaatggacatgaaccttcacctgg 5450822  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 172
Target Start/End: Complemental strand, 6270429 - 6270364
Alignment:
Q  109 tctttaagatttttaaatggtaactttttataaaaa--tgtgtaatcaataaattgaaaatcgaaa 172  Q
    |||||||||| |||||||||||  ||||||||||||  |||||||| |||| ||||||||| ||||    
T  6270429 tctttaagatatttaaatggtatttttttataaaaatttgtgtaattaatatattgaaaattgaaa 6270364  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 613 - 687
Target Start/End: Complemental strand, 8142484 - 8142410
Alignment:
Q  613 gctaaagatggaggccttgatgttattcaaacatatgtattttggaatggacatgagccttctcctggaaatgta 687  Q
    |||||||| |||||  | ||||| ||| |||| ||||| ||||||||||  ||||| ||||||||||||||||||    
T  8142484 gctaaagaaggaggtttggatgtaattgaaacctatgtgttttggaatgttcatgaaccttctcctggaaatgta 8142410  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 254 - 319
Target Start/End: Complemental strand, 37510322 - 37510257
Alignment:
Q  254 catatcatcatattttagataaaatattttatggaaaaccaaaattgttaaattttaaaataagga 319  Q
    |||||||||||||||||||   ||||||| || | ||| ||||| ||| |||||||||||||||||    
T  37510322 catatcatcatattttagacctaatatttgataggaaatcaaaactgtcaaattttaaaataagga 37510257  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 315
Target Start/End: Original strand, 39450848 - 39450901
Alignment:
Q  263 atattttagataaaatattttatggaaa-accaaaattgttaaattttaaaata 315  Q
    |||||||||| ||||||||| || || | |||||||||||||||||||||||||    
T  39450848 atattttagacaaaatatttgatagagagaccaaaattgttaaattttaaaata 39450901  T

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