View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5459-Insertion-7 (Length: 429)

Name: NF5459-Insertion-7
Description: NF5459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5459-Insertion-7
NF5459-Insertion-7
[»] chr6 (3 HSPs)
chr6 (194-429)||(9392965-9393200)
chr6 (6-163)||(9393219-9393375)
chr6 (337-379)||(32983472-32983514)
[»] chr4 (1 HSPs)
chr4 (221-307)||(32671288-32671375)
[»] chr5 (3 HSPs)
chr5 (281-383)||(34234455-34234555)
chr5 (258-306)||(17460862-17460910)
chr5 (318-379)||(18924591-18924652)
[»] chr3 (1 HSPs)
chr3 (209-290)||(2874088-2874170)
[»] chr8 (1 HSPs)
chr8 (264-296)||(25115325-25115357)


Alignment Details
Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 194 - 429
Target Start/End: Complemental strand, 9393200 - 9392965
Alignment:
Q  194 agagatagttatataatataactattaaaagcaataaataaaagataacgacatacttaccaatattcaaactatataatttaaaagtcttcatcttcat 293  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9393200 agagatggttatataatataactattaaaagcaataaatcaaagataaagacatacttaccaatattcaaacaatataatttaaaagtcttcatcttcat 9393101  T
Q  294 cttgtgcctccataga-nnnnnnnncttttgtgatatgtattttttattatcaaaattcagtcaagtctaagaaaggaatcttcttcgcaaacttgatat 392  Q
    ||||||||||||||||         |||||||||||||||||| ||||||| |||||||| ||||||||||||||| |||||||||| |||||||||||     
T  9393100 cttgtgcctccatagatttttttttcttttgtgatatgtatttgttattat-aaaattcattcaagtctaagaaagaaatcttcttcacaaacttgatag 9393002  T
Q  393 caaaaatattttgatatacctaaattcgtcggttaaa 429  Q
    ||||| |||||||||||||||||||||||||||||||    
T  9393001 caaaactattttgatatacctaaattcgtcggttaaa 9392965  T

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Target: chr6; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 6 - 163
Target Start/End: Complemental strand, 9393375 - 9393219
Alignment:
Q  6 caattataacaccatggtaatcgttatccgtgtctggtaattgattactgcaccttaaaaataagtttttcaaacttttcggagcttgcttaatatggac 105  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||    
T  9393375 caattattacaccatggtaatcgttatccatgtctggtaattgattactgcaccataaaaataagtttttcaaacttttcggagcttgcttcacatggac 9393276  T
Q  106 tcctattttaaactttaaaaaatgatttgtagtgaattcaaatgggtttatgagcatt 163  Q
    || |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  9393275 tcttattttaaac-ttaaaaaataatttgtagtgaattcaaatgggtttatgagcatt 9393219  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 379
Target Start/End: Complemental strand, 32983514 - 32983472
Alignment:
Q  337 ttattatcaaaattcagtcaagtctaagaaaggaatcttcttc 379  Q
    |||| ||||||||||||||||||||||||| | ||||||||||    
T  32983514 ttatcatcaaaattcagtcaagtctaagaaggaaatcttcttc 32983472  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 307
Target Start/End: Complemental strand, 32671375 - 32671288
Alignment:
Q  221 aaagcaataaataaaagataacga-catacttaccaatattcaaactatataatttaaaagtcttcatcttcatcttgtgcctccata 307  Q
    |||| ||||||| |||||||| || ||||||||| |  | ||| |||  ||||| |||||||||||||||||||||||||||||||||    
T  32671375 aaagtaataaatcaaagataaagatcatacttacaatgactcacacttaataatctaaaagtcttcatcttcatcttgtgcctccata 32671288  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 383
Target Start/End: Complemental strand, 34234555 - 34234455
Alignment:
Q  281 tcttcatcttcatcttgtgcctccatagannnnnnnncttttgtgatatgtattttttattatcaaaattcagtcaagtctaagaaaggaatcttcttcg 380  Q
    |||| |||||||||||||||||||||||         |||||||||| ||  ||| |||| ||||||| |||| |||||||||||||| |||||||||||    
T  34234555 tcttaatcttcatcttgtgcctccatag--ttttcttcttttgtgatgtgagtttgttatcatcaaaactcagccaagtctaagaaagaaatcttcttcg 34234458  T
Q  381 caa 383  Q
    |||    
T  34234457 caa 34234455  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 17460862 - 17460910
Alignment:
Q  258 attcaaactatataatttaaaagtcttcatcttcatcttgtgcctccat 306  Q
    ||||| |||||| ||| |||||||||| |||||||||||||||||||||    
T  17460862 attcacactatacaatctaaaagtctttatcttcatcttgtgcctccat 17460910  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 379
Target Start/End: Complemental strand, 18924652 - 18924591
Alignment:
Q  318 cttttgtgatatgtattttttattatcaaaattcagtcaagtctaagaaaggaatcttcttc 379  Q
    |||||||||| ||  ||| |||| |||||||||||||||||||||||||   ||||||||||    
T  18924652 cttttgtgatgtgagtttgttatcatcaaaattcagtcaagtctaagaagaaaatcttcttc 18924591  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 290
Target Start/End: Original strand, 2874088 - 2874170
Alignment:
Q  209 atataactattaaaagcaataaataaaagataacgac-atacttaccaatattcaaactatataatttaaaagtcttcatctt 290  Q
    ||||||||||| ||||| |||||  |||||||| ||| ||| |||  |||||||| | |||||||| ||||||||||||||||    
T  2874088 atataactattgaaagcgataaagcaaagataaagaccataattagaaatattcacattatataatctaaaagtcttcatctt 2874170  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 296
Target Start/End: Original strand, 25115325 - 25115357
Alignment:
Q  264 actatataatttaaaagtcttcatcttcatctt 296  Q
    |||||||||| ||||||||||||||||||||||    
T  25115325 actatataatctaaaagtcttcatcttcatctt 25115357  T

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