View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5459_low_2 (Length: 307)
Name: NF5459_low_2
Description: NF5459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5459_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 170 - 291
Target Start/End: Original strand, 8053938 - 8054059
Alignment:
| Q |
170 |
gctcgttgctgactttaagttttgttcattgctgccattgggaattaattcagtttaattcatttgtaaattacactcaatttttcatattaattcaact |
269 |
Q |
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| T |
8053938 |
gctcgttgctgactttaagttttgctcattgctgccattgggaattaattcagtttaattcatttgtaaattacactcaatttttcatattaattcaact |
8054037 |
T |
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| Q |
270 |
ttccatttcactccatgttcat |
291 |
Q |
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| T |
8054038 |
ttccatttcactccatgttcat |
8054059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 8053786 - 8053891
Alignment:
| Q |
18 |
aaaaacgtgctccaccacaacttcatctctttctttagttctttcgtgaaacaaaaactcagtatctttttccacctgctagccaccttcacaaccccat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
8053786 |
aaaaacgtgctccaccacaacttcatctctttctttggttctttcgtgaaacaaaaactccgtatctttttccacctgctagccatcttcacaaccccat |
8053885 |
T |
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| Q |
118 |
tgggag |
123 |
Q |
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|||||| |
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| T |
8053886 |
tgggag |
8053891 |
T |
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