View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5459_low_3 (Length: 282)
Name: NF5459_low_3
Description: NF5459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5459_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 4985359 - 4985628
Alignment:
| Q |
1 |
aatgcatttgaattcatatcactctctccaggaattgatctttctcgtttgcttgagaaaggtatgagtaaaagacatcatgcaagattttctacaaata |
100 |
Q |
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| T |
4985359 |
aatgcatttgaattcatatcactctctccaggaattgatctttctcgtttgtttgagaaaggtatgagtaaaagacatcatgcaagattttctacaaaaa |
4985458 |
T |
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| Q |
101 |
gaccgccttcaactgttgtgtcaaaacttgaagaaatagcacaaatagatggtagatttaaggttatgaagcaaaatgggattgttagattggagggaat |
200 |
Q |
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| T |
4985459 |
gaccaccttcaaatgttgtgtcaaaacttgaagaaatagcacaaatagatggtagatttaaggttatgaagcaaaatgggattgttagattggagggaat |
4985558 |
T |
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| Q |
201 |
tgagacaaggatagatgaacaactcagtatagatatagaaatttttgaagttacattttcattttatatt |
270 |
Q |
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| T |
4985559 |
tgagacaaggatagttgaacaactcagtatagatatagaaatttttgaagttacatcttcattttatatt |
4985628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 4982970 - 4983239
Alignment:
| Q |
1 |
aatgcatttgaattcatatcactctctccaggaattgatctttctcgtttgcttgagaaaggtatgagtaaaagacatcatgcaagattttctacaaata |
100 |
Q |
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||||||||||| |||||||||||||| | ||| |||||||||| ||||| |||| |||| || |||| || |||| |||||||||||| ||||||||| |
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| T |
4982970 |
aatgcatttgatatcatatcactctcttcgggacttgatctttcgggtttgtttgaaaaagatacgagtgaaggacaacatgcaagatttgctacaaata |
4983069 |
T |
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| Q |
101 |
gaccgccttcaactgttgtgtcaaaacttgaagaaatagcacaaatagatggtagatttaaggttatgaagcaaaatgggattgttagattggagggaat |
200 |
Q |
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|||| |||||||| ||||||||||||||||||| | ||||||| ||| ||||||||||||||| |||||||||||||||||||||||| |||||||| | |
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| T |
4983070 |
gaccaccttcaacaattgtgtcaaaacttgaagagacagcacaattagttggtagatttaaggtgatgaagcaaaatgggattgttagagtggagggatt |
4983169 |
T |
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| Q |
201 |
tgagacaaggatagatgaacaactcagtatagatatagaaatttttgaagttacattttcattttatatt |
270 |
Q |
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||||||| | || ||||||||||| || |||| |||||||||||||||| ||| ||||||||||||| |
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| T |
4983170 |
tgagacaggagtaagtgaacaactcaccattgatacagaaatttttgaagttgcatcttcattttatatt |
4983239 |
T |
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