View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5459_low_6 (Length: 243)
Name: NF5459_low_6
Description: NF5459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5459_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 563787 - 564001
Alignment:
| Q |
16 |
caaatccacctatagctttgtgactaagaatctcaacttgtggtgcccaatttgaaaccaaaaatccttgcttatttgttctttctaagaacccttttgg |
115 |
Q |
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| T |
563787 |
caaatccacctatagctttgtgactaagaatctcaacttgtggtgcccaatttgaaaccaaaaatccttgcttatttgttctttctaagaacccttttgg |
563886 |
T |
|
| Q |
116 |
taaaaaactcaaagggtcttttttagaattagaaacatcaaaataaatagcactagctatatcatttggttctctcataacccaaagaaacttttgacta |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
563887 |
taaaaaactcaaagggtcttttttagaattagaaacatcaaaataaatagcactagctatatcatttggttctctcacaacccaaagaaacttttgacta |
563986 |
T |
|
| Q |
216 |
ctcaattctaaccct |
230 |
Q |
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||||||||||||||| |
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| T |
563987 |
ctcaattctaaccct |
564001 |
T |
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