View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5459_low_7 (Length: 231)
Name: NF5459_low_7
Description: NF5459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5459_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 5228953 - 5228758
Alignment:
| Q |
18 |
catgtatagtattacgtcattaaaacatgttacattactgactttttagttcaaaaataccaggaagggaccaaaaattttagattttaaaataggatga |
117 |
Q |
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| T |
5228953 |
catgtatagtattacgtcattaaaacatgttacattactgactttttagttcaaaaataccaggaagggaccaaaaattttagattttaaaataggatga |
5228854 |
T |
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| Q |
118 |
tcaaatccacaaaatggtgaaaaaacgggaccacgattaagtaaaataaatgacataatttaatgttgttgccaaataacaacaaacatatacata |
213 |
Q |
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| T |
5228853 |
tcaaatccacaaaatggtgaaaaaacgggaccacgattaagtaaaataaatgacataatttaatgttgttgccaaataacaacaaacatatacata |
5228758 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 6898784 - 6898822
Alignment:
| Q |
102 |
ttttaaaataggatgatcaaatccacaaaatggtgaaaa |
140 |
Q |
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| T |
6898784 |
ttttaaaataggaagatcaaattcacaaaatggtgaaaa |
6898822 |
T |
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