View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5460-Insertion-12 (Length: 172)
Name: NF5460-Insertion-12
Description: NF5460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5460-Insertion-12 |
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Alignment Details
Target: chr4 (Bit Score: 104; Significance: 4e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 4e-52
Query Start/End: Original strand, 8 - 167
Target Start/End: Original strand, 7894403 - 7894562
Alignment:
| Q |
8 |
catagaatactgttcttcttgctatggttttttgtattcgattgataatcgctattgatttcccttaattaagagttcaacttggatctaattaataaat |
107 |
Q |
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| T |
7894403 |
catagaatattgtttttctcactatgatttttcgtattcgactgataatcgctattgatttcccttaattaagagttcaactttgatttaattaattaat |
7894502 |
T |
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| Q |
108 |
tcacaatttcgttttcaattttgtccaacaaacattcattgtaatttatcttcttcaatt |
167 |
Q |
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| T |
7894503 |
tcacaatttcgttttcaatttcatccaacaaacatttattgtaatttatcctcttcaatt |
7894562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 65 - 168
Target Start/End: Original strand, 35718107 - 35718214
Alignment:
| Q |
65 |
atttcccttaattaagagttcaacttggatctaattaataaattca----caatttcgttttcaattttgtccaacaaacattcattgtaatttatcttc |
160 |
Q |
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| T |
35718107 |
atttcccttacttaagatttcaacttgaatttaattaattaattaatttacaatgtcgttttcaactttgtccaacaaacattctttgtaatttgtcctc |
35718206 |
T |
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| Q |
161 |
ttcaattt |
168 |
Q |
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| T |
35718207 |
ttcaattt |
35718214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 3e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 47 - 168
Target Start/End: Complemental strand, 37147801 - 37147680
Alignment:
| Q |
47 |
gattgataatcgctattgatttcccttaattaagagttcaacttggatctaattaataaattcacaatttcgttttcaattttgtccaacaaacattcat |
146 |
Q |
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| T |
37147801 |
gattgataatcgctattaatttctcttaattaagagttcaacattgatttaattaattaattcacaattttgttttcaacttcgtccaacaaacatccct |
37147702 |
T |
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| Q |
147 |
tgtaatttatcttcttcaattt |
168 |
Q |
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| T |
37147701 |
tgtaatttatcctcttcaattt |
37147680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 7e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 87 - 168
Target Start/End: Complemental strand, 35411169 - 35411088
Alignment:
| Q |
87 |
acttggatctaattaataaattcacaatttcgttttcaattttgtccaacaaacattcattgtaatttatcttcttcaattt |
168 |
Q |
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| T |
35411169 |
acttgaatttaattaattaattcacaatttcgttttgaatttcgtccaacaaacattcattgaaatttatcctctttaattt |
35411088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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