View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5460-Insertion-2 (Length: 855)
Name: NF5460-Insertion-2
Description: NF5460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5460-Insertion-2 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 445; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 175 - 855
Target Start/End: Original strand, 41485100 - 41485775
Alignment:
| Q |
175 |
tttctagaacaaactt-acagcagatgtcatctacttttcatgacattggtcacatgttttcgtactctagaatggtttctttattggcaaagttgtgaa |
273 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| || ||||||| ||||||||||| ||||||||||||||||||||| |||| | | ||||| |
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|
| T |
41485100 |
tttctagaacaaactttacagcagatgtcatctacttttcttgtcattggtgacatgttttcgcactctagaatggtttctttatgggcagaatagtgaa |
41485199 |
T |
|
| Q |
274 |
gccacacctcgtagtcacatgttttgcagtaaccacaatattcacaactagtactattttgtgcttgttgcttgggatgatttcagaattatgtataata |
373 |
Q |
| |
|
|||||||||| || ||||||||||||| | |||||||| |||| |||||||||||||| |||||||||||| ||||| ||||||| |||||||||||| |
|
|
| T |
41485200 |
gccacacctcatattcacatgttttgctggaaccacaagattcgcaactagtactattccgtgcttgttgctagggataatttcagttttatgtataata |
41485299 |
T |
|
| Q |
374 |
tagctaatgtggtttgttggtggaaagattcactagctgtttcttaccaagaagttagagaagaataga--caaaaaatacataggaaaaaagtgctaaa |
471 |
Q |
| |
|
||||| || |||||||||| |||||| ||||||||| ||||||||||||||||||||||| |||||| |||||||||||||| |||| || ||||| |
|
|
| T |
41485300 |
tagcttatttggtttgttgatggaaaaattcactag---tttcttaccaagaagttagagaaaaatagagacaaaaaatacatagaaaaagtgtactaaa |
41485396 |
T |
|
| Q |
472 |
tgttaacctgtgcatctctcaggga--atttctacttgctatgtttattgtggtgaagtgtgggaaacaacaattaacgatttaacagtagattgacaat |
569 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41485397 |
tgtgaacctgtgcatctctcaggggggatttctacttgctatgtttattatggtgaagtgttggaaacaacaattaacgatttaacagtagattgacaat |
41485496 |
T |
|
| Q |
570 |
atttattacatattagagaaccaagttgatttaatcccaagaacatcaaccatggaggctatatagatactgcaatacgatggaaagttattgaaggcaa |
669 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41485497 |
atttattacatattagagaaccaagttgatttaatcccaagaacatcaaccatggaggctatatagatactgcaatacgatggaaagttattgaaggcaa |
41485596 |
T |
|
| Q |
670 |
caatagtaataccttcgtgaatatagaaaaagaagggttatacaagaaaccttgtgaaaatgtgctaatgtacaaaattctgtcattatgtatgtctaca |
769 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41485597 |
caatagtaataccttcgtgaatatagaaaaagaagggttatacaagaaaccctgtgaaaatgtgctaatgtacaaaattctgtcattatgtatgtctaca |
41485696 |
T |
|
| Q |
770 |
gaannnnnnncatccactttcttgcttaggatatttctcttcttaatattattgtgtatttggttttgataaattagtcactaaca |
855 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
41485697 |
gaa-ttttttcatccactttcttgcttaggatatttctcttaataatagt------tatttggttttgataaattagtcactaaca |
41485775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 157 - 597
Target Start/End: Original strand, 41481816 - 41482258
Alignment:
| Q |
157 |
agaatactctccatcctttttctagaacaaacttacagcagatgtcatctacttttcatgacattggtcacatgttttcgtactctagaatggtttcttt |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41481816 |
agaatactctccatcctttttctagaacaaacttacagcagatgtcatctacttttcttgacattggtcacatgttttcgtactctagaatggtttcttt |
41481915 |
T |
|
| Q |
257 |
attggcaaagttgtgaagccacacctcgtagtcacatgttttgcagtaaccacaatattcacaactagtactattttgtgcttgttgcttgggatgattt |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41481916 |
attggcaaagttgtgaagccacacctcgtaatcacatgttttgcagtaaccacaatattcacaactagtactattttgtgcttgttgcttgggatgattt |
41482015 |
T |
|
| Q |
357 |
cagaattatgtataatatagctaatgtggtttgttggtggaaagattcactagctgtttcttaccaagaagttagagaagaatagacaaaaaatacatag |
456 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41482016 |
cagaattatttataatatagcttatgtggtttgttggtggaaagattcactagctgtttcttaccaagaagttagagaaaaatagacaaaaaatacatag |
41482115 |
T |
|
| Q |
457 |
gaaaaaagtgctaaatgttaacctgtgcatctctca--gggaatttctacttgctatgtttattgtggtgaagtgtgggaaacaacaattaacgatttaa |
554 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41482116 |
gaaaaaagtgctaaatgtgaacctgtgcatctctcaggggggatttctacttgctatgtttattgtggtgaagtgtgggaaacaacaattaacgatttaa |
41482215 |
T |
|
| Q |
555 |
cagtagattgacaatatttattacatattagagaaccaagttg |
597 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
41482216 |
cagtagattgacaatatctattacatattagagaactaagttg |
41482258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 41481034 - 41481187
Alignment:
| Q |
8 |
cttttggacagttgaagactgctttctgttcacggtcaggagactattactttatttcaacgataaccaatcaaggaactcttgtaactgattggattat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41481034 |
cttttggacagttgaagactgctttctgttcacggtcaggagactattactttatttcaacgataaccaatcaaggaactcttgtaactgattggattat |
41481133 |
T |
|
| Q |
108 |
gttcaactacataacactaaaatctccctttttctctaaaatcagtatcagaat |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41481134 |
gttcaactacataacactaaaatctccctttttctctaaaatcagtattagaat |
41481187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 625 - 855
Target Start/End: Original strand, 41482263 - 41482494
Alignment:
| Q |
625 |
aggctatatagatactgcaatacgatggaaagttattgaaggcaacaa-tagtaata------ccttcgtgaatatagaaaaagaagggttatacaagaa |
717 |
Q |
| |
|
|||||||||| ||||||| || ||||||||||||||||||| ||| | |||||||| ||||| | |||||||||| ||||||||||||||||| |
|
|
| T |
41482263 |
aggctatatacctactgcagtaggatggaaagttattgaaggaaaccagtagtaatagtatggccttcattgatatagaaaaggaagggttatacaagaa |
41482362 |
T |
|
| Q |
718 |
accttgtgaaaatgtgctaatgtacaaaattctgtcattatgtatgtctacagaannnnnnncatccactttcttgcttaggatatttctcttcttaata |
817 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41482363 |
accctgtgaatatgtgctaatgtacaaaattctgtcattatgtatgtctacagaatttttttcatccactttcttgcttaggatatttctcttaataata |
41482462 |
T |
|
| Q |
818 |
ttattgtgtatttggttttgataaattagtcactaaca |
855 |
Q |
| |
|
| |||||||||||||||||||||||| ||||| |
|
|
| T |
41482463 |
gt------tatttggttttgataaattagtcagtaaca |
41482494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 2e-63; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 364 - 634
Target Start/End: Complemental strand, 45385830 - 45385559
Alignment:
| Q |
364 |
atgtataatatagctaatgtggtttgttggtggaaagattcactagctgtttcttaccaagaagttagaga-agaat--agacaaaaaatacataggaaa |
460 |
Q |
| |
|
|||||||||||| || ||| || ||||||||||||| ||||||||| ||||| ||||| ||||||||| || | ||| ||||||||||| |||| |||| |
|
|
| T |
45385830 |
atgtataatataacttatgcggattgttggtggaaaaattcactaggtgtttattacctagaagttagtgataaaatagagacaaaaaattcata-gaaa |
45385732 |
T |
|
| Q |
461 |
aaagt-gctaaatgttaacctgtgcatctctcagggaatttctacttgctatgtttattgtggtgaagtgtgggaaacaacaattaacgatttaacagta |
559 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||||||| || ||||| ||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
45385731 |
aaagtaactaaatgtgaacctgtgcatctctcagggaatttctacttgctttg-ttattctggtgaaatgtgggaaacagcaattaacgatttaacagtg |
45385633 |
T |
|
| Q |
560 |
gattgacaatatttattacatattagagaaccaagttgatttaatcccaagaacatcaaccatggaggctatata |
634 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| || ||| ||||| |||||||||| |||||| |
|
|
| T |
45385632 |
gattgacaatattta-tacatattagagaaccaagttgatttgatgccagagacatcgaccatggaggatatata |
45385559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 296 - 375
Target Start/End: Complemental strand, 45386052 - 45385973
Alignment:
| Q |
296 |
tttgcagtaaccacaatattcacaactagtactattttgtgcttgttgcttgggatgatttcagaattatgtataatata |
375 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
45386052 |
tttgcagtaaccacaagattcacaactagtactattttgtacttgttgcttgggatgatttcagttttatgtataatata |
45385973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 184 - 298
Target Start/End: Complemental strand, 45386193 - 45386079
Alignment:
| Q |
184 |
caaacttacagcagatgtcatctacttttcatgacattggtcacatgttttcgtactctagaatggtttctttattggcaaagttgtgaagccacacctc |
283 |
Q |
| |
|
|||||||| | || || ||||||||||||| || ||||||| |||||||||| ||||||||||||||||||||| |||| |||||||||||||| |||| |
|
|
| T |
45386193 |
caaacttatatcaaatttcatctacttttcttgtcattggtggcatgttttcgcactctagaatggtttctttataggcagagttgtgaagccacgcctc |
45386094 |
T |
|
| Q |
284 |
gtagtcacatgtttt |
298 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
45386093 |
atattcacatgtttt |
45386079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 45386561 - 45386499
Alignment:
| Q |
8 |
cttttggacagttgaagactgctttctgttcacggtcaggagactattactttatttcaacga |
70 |
Q |
| |
|
||||| ||||||| ||||||||||||| ||| ||||||||||||| ||||||| ||||||| |
|
|
| T |
45386561 |
cttttagacagttacagactgctttctgctcatggtcaggagactagcactttatatcaacga |
45386499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 7e-42; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 289 - 545
Target Start/End: Complemental strand, 5697834 - 5697587
Alignment:
| Q |
289 |
cacatgttttgcagtaaccacaatattcacaactagtactattttgtgcttgttgcttgggatgatttcagaattatgtataatatagctaatgtggttt |
388 |
Q |
| |
|
||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||| ||| ||||||| ||||| ||||||| || |||| |||| |
|
|
| T |
5697834 |
cacatgttttgcattaaccccaaaattcacaactagtactattttgtgcttgttgcttgagataatttcagttttatgaataatat--cttatgtagttt |
5697737 |
T |
|
| Q |
389 |
gttggtggaaagattcactagctgtttcttaccaagaagttagagaagaatagacaaaaaatacataggaaaaaagtgctaaatgttaacctgtgcatct |
488 |
Q |
| |
|
||||||||||| |||| |||| ||||||||||||| | |||||| |||| || ||||| ||| | || |||| ||| |||||||| |||| |
|
|
| T |
5697736 |
gttggtggaaaaattccctagttgtttcttaccaattaattagag----------aaaatatccatagaaaatatgtactaattgtgaacctgtgaatct |
5697647 |
T |
|
| Q |
489 |
ctcagggaat---ttctacttgctatgtttattgtggtgaagtgtgggaaacaacaatta |
545 |
Q |
| |
|
|||||||||| |||||||||| ||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
5697646 |
ctcagggaatttcttctacttgccatgttaattgtggtaaagtgtgggaaacaacaatta |
5697587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 288 - 542
Target Start/End: Complemental strand, 5736485 - 5736243
Alignment:
| Q |
288 |
tcacatgttttgcagtaaccacaatattcacaactagtactattttgtgcttgttgcttgggatgatttcagaattatgtataatatagctaatgtggtt |
387 |
Q |
| |
|
|||||||||||||| ||||| || ||||||||||||||||||||| |||||||| |||| ||| ||||||| ||||| ||||||| || |||| || |
|
|
| T |
5736485 |
tcacatgttttgcaataaccctaaaattcacaactagtactattttttgcttgtttcttgagataatttcagttttatgaataatat--cttatgtattt |
5736388 |
T |
|
| Q |
388 |
tgttggtggaaagattcactagctgtttcttaccaagaagttagagaagaatagacaaaaaatacataggaaaaaagtgctaaatgttaacctgtgcatc |
487 |
Q |
| |
|
||||||| |||| |||| ||| ||||||||||||| | |||||||| ||||| |||| ||| | || |||| ||| |||||||||||| |
|
|
| T |
5736387 |
tgttggttgaaaaattcgttagttgtttcttaccaattaattagagaa----------aaaatcgatagaaaatatgtactaattgtgaacctgtgcatc |
5736298 |
T |
|
| Q |
488 |
tctcagggaatttctacttgctatgtttattgtggtgaagtgtgggaaacaacaa |
542 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
5736297 |
tctcagggaatttctacttgccatgttaattgtggtgaagtgtgggaaacaacaa |
5736243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 288 - 542
Target Start/End: Complemental strand, 5773597 - 5773355
Alignment:
| Q |
288 |
tcacatgttttgcagtaaccacaatattcacaactagtactattttgtgcttgttgcttgggatgatttcagaattatgtataatatagctaatgtggtt |
387 |
Q |
| |
|
|||||||||||||| ||||| || ||||||||||||||||||||| |||||||| |||| ||| ||||||| ||||| ||||||| || |||| || |
|
|
| T |
5773597 |
tcacatgttttgcaataaccctaaaattcacaactagtactattttttgcttgtttcttgagataatttcagttttatgaataatat--cttatgtattt |
5773500 |
T |
|
| Q |
388 |
tgttggtggaaagattcactagctgtttcttaccaagaagttagagaagaatagacaaaaaatacataggaaaaaagtgctaaatgttaacctgtgcatc |
487 |
Q |
| |
|
||||||| |||| |||| ||| ||||||||||||| | |||||||| ||||| |||| ||| | || |||| ||| |||||||||||| |
|
|
| T |
5773499 |
tgttggttgaaaaattcgttagttgtttcttaccaattaattagagaa----------aaaatcgatagaaaatatgtactaattgtgaacctgtgcatc |
5773410 |
T |
|
| Q |
488 |
tctcagggaatttctacttgctatgtttattgtggtgaagtgtgggaaacaacaa |
542 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
5773409 |
tctcagggaatttctacttgccatgttaattgtggtgaagtgtgggaaacaacaa |
5773355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 245 - 394
Target Start/End: Complemental strand, 5701301 - 5701153
Alignment:
| Q |
245 |
aatggtttctttattggcaaagttgtgaagccacacctcgtagtcacatgttttgcagtaaccacaatattcacaactagtactattttgtgcttgttgc |
344 |
Q |
| |
|
||||||||||| || || | |||||||||||||||||| || ||||||||||||||| |||||||| |||||| |||||| |||| | |||||||||| |
|
|
| T |
5701301 |
aatggtttcttcatgggaagtgttgtgaagccacacctcatactcacatgttttgcagaaaccacaagattcacgactagttctatctggtgcttgttgt |
5701202 |
T |
|
| Q |
345 |
ttgggatgatttcagaattatgtataatatagctaatgtggtttgttggt |
394 |
Q |
| |
|
||| ||||||||||| |||||||||| |||||| ||| ||||| ||||| |
|
|
| T |
5701201 |
ttgagatgatttcagttttatgtataa-atagcttatgcggtttattggt |
5701153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 271 - 374
Target Start/End: Complemental strand, 5694873 - 5694770
Alignment:
| Q |
271 |
gaagccacacctcgtagtcacatgttttgcagtaaccacaatattcacaactagtactattttgtgcttgttgcttgggatgatttcagaattatgtata |
370 |
Q |
| |
|
|||||||||| || | |||||||||||||| ||||| || ||||||||||||||||||||| ||||||||||||| ||| ||||||| ||||| ||| |
|
|
| T |
5694873 |
gaagccacacttcattttcacatgttttgcaataaccctaaaattcacaactagtactattttttgcttgttgcttgagataatttcagttttatgaata |
5694774 |
T |
|
| Q |
371 |
atat |
374 |
Q |
| |
|
|||| |
|
|
| T |
5694773 |
atat |
5694770 |
T |
|
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Target: chr1 (Bit Score: 53; Significance: 6e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 690 - 766
Target Start/End: Complemental strand, 20434953 - 20434878
Alignment:
| Q |
690 |
atatagaaaaagaagggttatacaagaaaccttgtgaaaatgtgctaatgtacaaaattctgtcattatgtatgtct |
766 |
Q |
| |
|
|||||||||||||||||| ||||||||| || ||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
20434953 |
atatagaaaaagaagggtgatacaagaa-ccatgtgacaatgtgctaatgtacaaaattctgtcattgtgtatgtct |
20434878 |
T |
|
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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 488 - 534
Target Start/End: Complemental strand, 20434541 - 20434495
Alignment:
| Q |
488 |
tctcagggaatttctacttgctatgtttattgtggtgaagtgtggga |
534 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
20434541 |
tctctgggaatttctacttgctatgtttattgtcctgaagtgtggga |
20434495 |
T |
|
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