View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5460-Insertion-3 (Length: 846)

Name: NF5460-Insertion-3
Description: NF5460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5460-Insertion-3
NF5460-Insertion-3
[»] chr3 (6 HSPs)
chr3 (350-846)||(40361945-40362451)
chr3 (8-230)||(40362767-40362988)
chr3 (222-299)||(40362503-40362579)
chr3 (661-776)||(1699932-1700048)
chr3 (414-456)||(36038598-36038640)
chr3 (401-456)||(1590412-1590467)
[»] chr6 (2 HSPs)
chr6 (659-772)||(32549402-32549516)
chr6 (661-722)||(33013021-33013082)
[»] chr2 (6 HSPs)
chr2 (661-776)||(29927764-29927879)
chr2 (661-729)||(35426490-35426558)
chr2 (737-775)||(42013427-42013465)
chr2 (404-455)||(33292973-33293024)
chr2 (679-728)||(32979086-32979135)
chr2 (401-470)||(35792157-35792226)
[»] chr7 (5 HSPs)
chr7 (660-776)||(33487182-33487299)
chr7 (661-727)||(1256801-1256867)
chr7 (401-461)||(26881636-26881696)
chr7 (689-776)||(41639724-41639812)
chr7 (684-776)||(21836000-21836092)
[»] chr4 (6 HSPs)
chr4 (661-732)||(47533818-47533889)
chr4 (689-772)||(19401743-19401827)
chr4 (661-721)||(29010113-29010173)
chr4 (416-459)||(27048789-27048832)
chr4 (679-722)||(40197919-40197962)
chr4 (415-469)||(17629421-17629475)
[»] chr1 (6 HSPs)
chr1 (661-775)||(31507298-31507413)
chr1 (662-729)||(37543859-37543926)
chr1 (661-721)||(33150313-33150373)
chr1 (679-772)||(3360386-3360480)
chr1 (428-462)||(16752776-16752810)
chr1 (661-774)||(28190485-28190599)
[»] chr5 (3 HSPs)
chr5 (660-720)||(39043607-39043667)
chr5 (416-464)||(40438609-40438657)
chr5 (407-470)||(40918950-40919013)
[»] chr8 (1 HSPs)
chr8 (661-728)||(34646288-34646355)


Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 350 - 846
Target Start/End: Complemental strand, 40362451 - 40361945
Alignment:
Q  350 catattgtctaaagctaatgtgttatttttagagattaaacttgtcagtgatatgttagttcgtaaaatatctctaaaaatatctatttgatatgatttg 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  40362451 catattgtctaaagctaatgtgttatttttagagattaaacttgtcagtgatatgttagtttgtaaaatatctttaaaaatatctatttgatatgatttg 40362352  T
Q  450 attgaatgcatgtgttaaaaaacatttacattgtcggtttatgaaaattaatctcttattctatatacatataaagacgggtaggtgttagagagagttt 549  Q
    ||| |||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40362351 attaaatgcatgtgctaaaaaacatttacaccgtcggtttatgaaaattaatctcttattctatatacatataaagacgggtaggtgttagagagagttt 40362252  T
Q  550 taagaataaaatgttcatagcactccctctttggcgattttgaattttgttgtatgacctgtagaaaaaatcttacggatccatcatgtgcttaagcaag 649  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40362251 taagaataaaatgttcatagcactccctctttggcgattttgaattttgttgtatgacctgtggaaaaaatcttacggatccatcatgtgcttaagcaag 40362152  T
Q  650 aaaaatccatagaaaattgcctttcacatttcacacaatgctaagaaacaccagaaaatgaaaaatttaaccctaaatttca-tgatagttaactatcat 748  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||| | |    
T  40362151 aaaaatccatagaaaattgcctttcacatttcatacaatgctaagaaacaccataaaatgaaaaatttaaccccaaatttcattgatagttaactaccgt 40362052  T
Q  749 cggttaaaatctatcgacagttaactgcaac---------ttttgtggtatttcctagcaacttttgatctggaaacagcaattttcaaatccatgttgc 839  Q
    ||||||||||| |||||||||||||||||||         ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40362051 cggttaaaatccatcgacagttaactgcaacttttaataattttgtggtgtttcctagcaacttttgatctggaaacagcaattttcaaatccatgttgc 40361952  T
Q  840 tattggg 846  Q
    |||||||    
T  40361951 tattggg 40361945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 40362988 - 40362767
Alignment:
Q  8 aaaccctcacgcacagcaaactgcacaagccatcagttccaaatgacatgcattcaacgtgatttattcgagcttttgttttcaacaacacaagacgtgt 107  Q
    ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40362988 aaaccctcacgcacagcaaactgcacaagcca---gttccaaatgacatgcattcaacgtgatttattcgagcttttgttttcaacaacacaagacgtgt 40362892  T
Q  108 aagat-----aggtagtggttaattgagaacattcattttggttataagttagatgtgcattttaataatgggacataaatttggattccacaagttttc 202  Q
    |||||     |||||||||||||||||||||||||||||||||||||||||| ||||||||||   ||||||||||||||||||||||||||||||||||    
T  40362891 aagataggttaggtagtggttaattgagaacattcattttggttataagttaaatgtgcattt---taatgggacataaatttggattccacaagttttc 40362795  T
Q  203 tcaccactcatcctatggatttaatgaa 230  Q
    ||||||||||||||||||||||||||||    
T  40362794 tcaccactcatcctatggatttaatgaa 40362767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 40362579 - 40362503
Alignment:
Q  222 tttaatgaatatatagctgggaaggagttaggaattaaacttaggaggaaccaaacttaaatgtgtaatttagcaaag 299  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  40362579 tttaatgaatatatagcagggaaggagttaggaattaaacttaggaggaacc-aacttaaatgtgtaatttagtaaag 40362503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 661 - 776
Target Start/End: Original strand, 1699932 - 1700048
Alignment:
Q  661 gaaaattgcctttcacatttcacacaatgctaagaaacaccagaaaatgaaaaatttaaccctaaatttcat-gatagttaactatcatcggttaaaatc 759  Q
    |||||||| |||||||| ||||||||||||||||||||||||  |||| | ||||||||||  ||||| ||| |   |||||||| | || |||||||||    
T  1699932 gaaaattgtctttcacacttcacacaatgctaagaaacaccatgaaataacaaatttaacctcaaattccatcggccgttaactaccgtcagttaaaatc 1700031  T
Q  760 tatcgacagttaactgc 776  Q
     || |||||||||||||    
T  1700032 cattgacagttaactgc 1700048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 414 - 456
Target Start/End: Complemental strand, 36038640 - 36038598
Alignment:
Q  414 aaaatatctctaaaaatatctatttgatatgatttgattgaat 456  Q
    |||||||||||| |||||||||||||| |||||||||||||||    
T  36038640 aaaatatctctataaatatctatttgacatgatttgattgaat 36038598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 401 - 456
Target Start/End: Original strand, 1590412 - 1590467
Alignment:
Q  401 tatgttagttcgtaaaatatctctaaaaatatctatttgatatgatttgattgaat 456  Q
    ||||||| ||| |||||||||| ||||||||| ||||| |||| ||||||||||||    
T  1590412 tatgttaattcttaaaatatctttaaaaatatttattttatataatttgattgaat 1590467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 659 - 772
Target Start/End: Original strand, 32549402 - 32549516
Alignment:
Q  659 tagaaaattgcctttcacatttcacacaatgctaagaaacaccagaaaatgaaaaatttaaccctaaatttcat-gatagttaactatcatcggttaaaa 757  Q
    ||||||||||  ||||||||||||||||||||||||||||||||  |||||| || |||||||| ||||||||| | |||||||||||| ||||||||||    
T  32549402 tagaaaattgtttttcacatttcacacaatgctaagaaacaccattaaatgacaagtttaaccccaaatttcatcggtagttaactatcgtcggttaaaa 32549501  T
Q  758 tctatcgacagttaa 772  Q
    |  |||| |||||||    
T  32549502 ttcatcggcagttaa 32549516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 661 - 722
Target Start/End: Original strand, 33013021 - 33013082
Alignment:
Q  661 gaaaattgcctttcacatttcacacaatgctaagaaacaccagaaaatgaaaaatttaaccc 722  Q
    ||||||||| |||| || ||||| |||| ||| ||||||||| ||||||| |||||||||||    
T  33013021 gaaaattgcttttcgcacttcacgcaatactatgaaacaccataaaatgataaatttaaccc 33013082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 9e-23; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 661 - 776
Target Start/End: Complemental strand, 29927879 - 29927764
Alignment:
Q  661 gaaaattgcctttcacatttcacacaatgctaagaaacaccagaaaatgaaaaatttaaccctaaatttcatgatagttaactatcatcggttaaaatct 760  Q
    ||||||||||||||||| ||||||||||||||| ||  ||||  |||||| ||||||||||| |||||||||   ||||||||||| ||||||||||||     
T  29927879 gaaaattgcctttcacacttcacacaatgctaaaaattaccatgaaatgataaatttaaccccaaatttcatcggagttaactatcgtcggttaaaatcc 29927780  T
Q  761 atcgacagttaactgc 776  Q
    |||  |||||||||||    
T  29927779 atcagcagttaactgc 29927764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 661 - 729
Target Start/End: Complemental strand, 35426558 - 35426490
Alignment:
Q  661 gaaaattgcctttcacatttcacacaatgctaagaaacaccagaaaatgaaaaatttaaccctaaattt 729  Q
    ||||||||| ||||||| ||||| ||||||||||||||| |||||||||| ||||||||| ||||||||    
T  35426558 gaaaattgcttttcacacttcactcaatgctaagaaacatcagaaaatgacaaatttaactctaaattt 35426490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 737 - 775
Target Start/End: Complemental strand, 42013465 - 42013427
Alignment:
Q  737 gttaactatcatcggttaaaatctatcgacagttaactg 775  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  42013465 gttaactatcatcggttaaaatttatcgacagttaactg 42013427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 404 - 455
Target Start/End: Original strand, 33292973 - 33293024
Alignment:
Q  404 gttagttcgtaaaatatctctaaaaatatctatttgatatgatttgattgaa 455  Q
    |||||||| |||||||||| || |||||||||||| ||| ||||||||||||    
T  33292973 gttagttcataaaatatctttacaaatatctattttatacgatttgattgaa 33293024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 679 - 728
Target Start/End: Complemental strand, 32979135 - 32979086
Alignment:
Q  679 ttcacacaatgctaagaaacaccagaaaatgaaaaatttaaccctaaatt 728  Q
    |||||| |||||||||||||| || ||||||| ||||||||||| |||||    
T  32979135 ttcacaaaatgctaagaaacatcataaaatgataaatttaaccccaaatt 32979086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 401 - 470
Target Start/End: Original strand, 35792157 - 35792226
Alignment:
Q  401 tatgttagttcgtaaaatatctctaaaaatatctatttgatatgatttgattgaatgcatgtgttaaaaa 470  Q
    ||||||||||| |||||||| | ||  |||||||| ||||||| |||| ||||||||||| ||| |||||    
T  35792157 tatgttagttcttaaaatatatgtacgaatatctacttgatattattttattgaatgcatttgtaaaaaa 35792226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 660 - 776
Target Start/End: Original strand, 33487182 - 33487299
Alignment:
Q  660 agaaaattgcctttcacatttcacacaatgctaagaaacaccagaaaatgaaaaatttaaccctaaatttcat-gatagttaactatcatcggttaaaat 758  Q
    |||||||||| ||||||| || || |||||||||||||||||| ||||| | |||||||||   |||||  || | ||||||||||||| ||||||||||    
T  33487182 agaaaattgcttttcacactttactcaatgctaagaaacaccataaaataacaaatttaacttcaaattctatcggtagttaactatcagcggttaaaat 33487281  T
Q  759 ctatcgacagttaactgc 776  Q
      |||| |||||||||||    
T  33487282 tcatcggcagttaactgc 33487299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 661 - 727
Target Start/End: Complemental strand, 1256867 - 1256801
Alignment:
Q  661 gaaaattgcctttcacatttcacacaatgctaagaaacaccagaaaatgaaaaatttaaccctaaat 727  Q
    ||||||||||||||||| | ||||| ||||||| |||||||| ||||||| |||||||||| |||||    
T  1256867 gaaaattgcctttcacactccacacgatgctaataaacaccataaaatgataaatttaaccttaaat 1256801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 401 - 461
Target Start/End: Original strand, 26881636 - 26881696
Alignment:
Q  401 tatgttagttcgtaaaatatctctaaaaatatctatttgatatgatttgattgaatgcatg 461  Q
    |||||||| | |||||||||||| |||||||| ||| |||  |||||||||||||||||||    
T  26881636 tatgttagcttgtaaaatatctcaaaaaatatatatatgacgtgatttgattgaatgcatg 26881696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 689 - 776
Target Start/End: Complemental strand, 41639812 - 41639724
Alignment:
Q  689 gctaagaaacaccagaaaatgaaaaatttaaccctaaatttcat-gatagttaactatcatcggttaaaatctatcgacagttaactgc 776  Q
    ||||| ||| |||| ||||||| ||||||||||| || || ||| || ||||||||| ||||||||||| || |||||| |||||||||    
T  41639812 gctaaaaaagaccataaaatgacaaatttaaccccaatttccatcgacagttaactaccatcggttaaactcgatcgaccgttaactgc 41639724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 684 - 776
Target Start/End: Original strand, 21836000 - 21836092
Alignment:
Q  684 acaatgctaagaaacaccagaaaatgaaaaatttaaccctaaatttcat-gatagttaactatcatcggttaaaatctatcgacagttaactgc 776  Q
    ||||||||||||||||| || |||||| || ||||| ||  |||||||| || |||||||| || |||||||||| | ||| ||||||||||||    
T  21836000 acaatgctaagaaacactagtaaatgacaa-tttaagcccgaatttcatcgacagttaactgtcgtcggttaaaaaccatcaacagttaactgc 21836092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 661 - 732
Target Start/End: Complemental strand, 47533889 - 47533818
Alignment:
Q  661 gaaaattgcctttcacatttcacacaatgctaagaaacaccagaaaatgaaaaatttaaccctaaatttcat 732  Q
    ||||||||||||||||| ||||| |||||||||||||||| |  |||||| ||||||||||  |||||||||    
T  47533889 gaaaattgcctttcacacttcacgcaatgctaagaaacacaattaaatgataaatttaacctcaaatttcat 47533818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 689 - 772
Target Start/End: Complemental strand, 19401827 - 19401743
Alignment:
Q  689 gctaagaaacaccagaaaatgaaaaatttaaccctaaatttcat-gatagttaactatcatcggttaaaatctatcgacagttaa 772  Q
    |||||||||||||| ||||||| ||||||||||| || |||| | |  ||||||||| | ||||||||||||||||| |||||||    
T  19401827 gctaagaaacaccataaaatgataaatttaaccccaattttcttcggcagttaactaccgtcggttaaaatctatcggcagttaa 19401743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 661 - 721
Target Start/End: Complemental strand, 29010173 - 29010113
Alignment:
Q  661 gaaaattgcctttcacatttcacacaatgctaagaaacaccagaaaatgaaaaatttaacc 721  Q
    ||||| ||| ||||||| ||||  |||||||||||||||||| ||||||| ||||||||||    
T  29010173 gaaaaatgcttttcacacttcattcaatgctaagaaacaccataaaatgacaaatttaacc 29010113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 416 - 459
Target Start/End: Complemental strand, 27048832 - 27048789
Alignment:
Q  416 aatatctctaaaaatatctatttgatatgatttgattgaatgca 459  Q
    ||||||||||||| |||||| ||||||||||||||||| |||||    
T  27048832 aatatctctaaaactatctacttgatatgatttgattggatgca 27048789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 679 - 722
Target Start/End: Complemental strand, 40197962 - 40197919
Alignment:
Q  679 ttcacacaatgctaagaaacaccagaaaatgaaaaatttaaccc 722  Q
    |||||||||||||||||||||| | ||||||| |||||||||||    
T  40197962 ttcacacaatgctaagaaacactataaaatgataaatttaaccc 40197919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 415 - 469
Target Start/End: Complemental strand, 17629475 - 17629421
Alignment:
Q  415 aaatatctctaaaaatatctatttgatatgatttgattgaatgcatgtgttaaaa 469  Q
    ||||||||||||||||||||||||  |||||||| |||| | |||||||| ||||    
T  17629475 aaatatctctaaaaatatctattttgtatgatttaattggaagcatgtgtaaaaa 17629421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 661 - 775
Target Start/End: Complemental strand, 31507413 - 31507298
Alignment:
Q  661 gaaaattgcctttcacatttcacacaatgctaagaaacaccagaaaatgaaaaatttaaccctaaatttcat-gatagttaactatcatcggttaaaatc 759  Q
    ||||||||  |||| ||||||||||||  |||||||||||||  |||||| || ||||||| ||||||  || | ||||||||||||||||||||||||     
T  31507413 gaaaattgtttttcccatttcacacaaaactaagaaacaccatgaaatgataagtttaaccttaaattctatcggtagttaactatcatcggttaaaatt 31507314  T
Q  760 tatcgacagttaactg 775  Q
     | || ||||||||||    
T  31507313 caacggcagttaactg 31507298  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 662 - 729
Target Start/End: Complemental strand, 37543926 - 37543859
Alignment:
Q  662 aaaattgcctttcacatttcacacaatgctaagaaacaccagaaaatgaaaaatttaaccctaaattt 729  Q
    |||||||  ||||||| ||||| |||| ||||| ||||| | ||||||||||||||||||||||||||    
T  37543926 aaaattgtttttcacacttcactcaatactaaggaacactataaaatgaaaaatttaaccctaaattt 37543859  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 661 - 721
Target Start/End: Original strand, 33150313 - 33150373
Alignment:
Q  661 gaaaattgcctttcacatttcacacaatgctaagaaacaccagaaaatgaaaaatttaacc 721  Q
    ||||||||| ||||||| || |||| |||||||||||||| | ||||||| ||||||||||    
T  33150313 gaaaattgcatttcacaatttacacgatgctaagaaacactataaaatgacaaatttaacc 33150373  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 679 - 772
Target Start/End: Original strand, 3360386 - 3360480
Alignment:
Q  679 ttcacacaatgctaagaaacaccagaaaatgaaaaatttaaccctaaatttcatga-tagttaactatcatcggttaaaatctatcgacagttaa 772  Q
    ||||||||| | ||||||||||||  |||||| || |||||||| ||||||||  | ||||||||||  |||||||||||| || || |||||||    
T  3360386 ttcacacaaagttaagaaacaccatgaaatgacaagtttaacccaaaatttcaacagtagttaactactatcggttaaaatatagcggcagttaa 3360480  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 428 - 462
Target Start/End: Original strand, 16752776 - 16752810
Alignment:
Q  428 aatatctatttgatatgatttgattgaatgcatgt 462  Q
    ||||||||||| |||||||||||||||||||||||    
T  16752776 aatatctatttaatatgatttgattgaatgcatgt 16752810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 661 - 774
Target Start/End: Original strand, 28190485 - 28190599
Alignment:
Q  661 gaaaattgcctttcacatttcacacaatgctaagaaacaccagaaaatgaaaaatttaaccctaaatttcatga-tagttaactatcatcggttaaaatc 759  Q
    ||||||||| |||| || ||||||||| || |||||||||||  |||||| || |||||||  ||||||||| | |||||||||| |   ||||||||||    
T  28190485 gaaaattgcttttcccacttcacacaaagcaaagaaacaccatgaaatgacaagtttaacctcaaatttcatcagtagttaactaccgctggttaaaatc 28190584  T
Q  760 tatcgacagttaact 774  Q
    || ||  ||||||||    
T  28190585 tagcggtagttaact 28190599  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 660 - 720
Target Start/End: Complemental strand, 39043667 - 39043607
Alignment:
Q  660 agaaaattgcctttcacatttcacacaatgctaagaaacaccagaaaatgaaaaatttaac 720  Q
    |||||||||||||| ||| ||||||||||||||||||||||||  ||| || |||||||||    
T  39043667 agaaaattgccttttacacttcacacaatgctaagaaacaccatgaaaggacaaatttaac 39043607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 416 - 464
Target Start/End: Complemental strand, 40438657 - 40438609
Alignment:
Q  416 aatatctctaaaaatatctatttgatatgatttgattgaatgcatgtgt 464  Q
    ||||| |||| |||||||||||||| |||||||||||| ||||||||||    
T  40438657 aatatttctacaaatatctatttgacatgatttgattggatgcatgtgt 40438609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 470
Target Start/End: Original strand, 40918950 - 40919013
Alignment:
Q  407 agttcgtaaaatatctctaaaaatatctatttgatatgatttgattgaatgcatgtgttaaaaa 470  Q
    ||||| |||||||||||||||| ||| ||||||| || ||||||||| || ||||||| |||||    
T  40918950 agttcctaaaatatctctaaaattatttatttgacataatttgattggatacatgtgtaaaaaa 40919013  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 661 - 728
Target Start/End: Complemental strand, 34646355 - 34646288
Alignment:
Q  661 gaaaattgcctttcacatttcacacaatgctaagaaacaccagaaaatgaaaaatttaaccctaaatt 728  Q
    |||||||| |||| ||| ||||||||||||||| ||||||||  |||||| |||||||| || |||||    
T  34646355 gaaaattgtcttttacacttcacacaatgctaataaacaccatgaaatgacaaatttaatcccaaatt 34646288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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