View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5460-Insertion-4 (Length: 770)
Name: NF5460-Insertion-4
Description: NF5460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5460-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 333 - 686
Target Start/End: Complemental strand, 26162389 - 26162035
Alignment:
| Q |
333 |
atatagcaagttaatttaatattaagactttttt-aaagaataaaacctcaaatatattggagataattaaacatgatgtgatggcccaagaagcgttaa |
431 |
Q |
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| T |
26162389 |
atatagcaagttaatttaatattaagactttttttaaagaataaaacctcaaatatattggagataattaaacatgatatgatggcccaagaagcgttaa |
26162290 |
T |
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| Q |
432 |
taattccctgtcggagaactcattccttgccactatgctagggtttcccttactagggttaccggtggccgcggattgtgtcacttttatctcattatcg |
531 |
Q |
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| T |
26162289 |
taattccctgtcggagaactcattccttgccactatgctagggtttcccatactagggttacccgcggccgcggattgtgtcacttttatctcattatcg |
26162190 |
T |
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| Q |
532 |
gtgctttgtttttcctttgcagtgttttctctaccattgtatcttgttcatgcgattctccgttgattggagactatatattcaacgtcttgtcttctcc |
631 |
Q |
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| T |
26162189 |
gtgctttgtttttcctttgcagtgttttctctaccattgtctcttgttcatgcgattctccgttgattggagactatatattcaacgtcttgtcttcttc |
26162090 |
T |
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| Q |
632 |
gtctacgtcgttgtgtcgtttcctccatccattgcaatatgctttcactctaagg |
686 |
Q |
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| T |
26162089 |
gtctacgtggttgtgtcgtttcctccatccattgcaatttgctttcactctaagg |
26162035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 194 - 317
Target Start/End: Complemental strand, 26162502 - 26162376
Alignment:
| Q |
194 |
gattgaacgtttaatgaatttctttaagatgttagtgcatatagattaatagtcactcataatatatatttagaaaag---aggtccaactctgagccac |
290 |
Q |
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| T |
26162502 |
gattgaacgtttaatgaatttctttaagatgttagtgcatatagattaatagtcactcataatatatatttcgaaaagatcaggtccaactctgagccac |
26162403 |
T |
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| Q |
291 |
tcgcttttgcctaatatagcaagttaa |
317 |
Q |
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| T |
26162402 |
tcgctttttcctaatatagcaagttaa |
26162376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 6 - 118
Target Start/End: Complemental strand, 26162689 - 26162578
Alignment:
| Q |
6 |
caaatataatgtgattacaatattaaatacaatgtaaacaacgtaaaagactatcccaccaatttgaataatgcaatctcaagtatatctctttatgcta |
105 |
Q |
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| T |
26162689 |
caaatataatgtgattacaatattaaatacaatgtaaacaacgtaaaagactatcccaccaattt-aataatgcaatctcaagtatatctctttatgcta |
26162591 |
T |
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| Q |
106 |
tgcatcttacagc |
118 |
Q |
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|| |||||||||| |
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| T |
26162590 |
tgtatcttacagc |
26162578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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