View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5460-Insertion-5 (Length: 641)

Name: NF5460-Insertion-5
Description: NF5460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5460-Insertion-5
NF5460-Insertion-5
[»] chr2 (4 HSPs)
chr2 (308-561)||(18724598-18724850)
chr2 (8-151)||(18724100-18724243)
chr2 (308-529)||(17651339-17651560)
chr2 (309-523)||(41849094-41849306)
[»] chr1 (3 HSPs)
chr1 (413-529)||(16426512-16426629)
chr1 (418-518)||(50127132-50127232)
chr1 (420-529)||(3387735-3387844)
[»] scaffold0012 (1 HSPs)
scaffold0012 (413-529)||(209269-209385)
[»] chr7 (9 HSPs)
chr7 (422-529)||(9729851-9729958)
chr7 (407-486)||(11820489-11820568)
chr7 (413-532)||(27993979-27994101)
chr7 (418-486)||(11815490-11815557)
chr7 (413-464)||(48598453-48598504)
chr7 (408-505)||(11810876-11810973)
chr7 (413-449)||(11812535-11812571)
chr7 (407-486)||(11814358-11814438)
chr7 (308-380)||(11816795-11816867)
[»] chr8 (7 HSPs)
chr8 (407-524)||(13097523-13097640)
chr8 (420-529)||(18393524-18393633)
chr8 (435-529)||(27401903-27401997)
chr8 (407-462)||(2889701-2889756)
chr8 (413-462)||(3159971-3160020)
chr8 (308-389)||(15131819-15131900)
chr8 (308-392)||(13097657-13097741)
[»] scaffold1723 (1 HSPs)
scaffold1723 (413-529)||(304-419)
[»] chr3 (1 HSPs)
chr3 (407-518)||(42718559-42718669)
[»] chr6 (4 HSPs)
chr6 (421-529)||(2602169-2602275)
chr6 (407-486)||(17261717-17261796)
chr6 (414-464)||(6812636-6812686)
chr6 (308-389)||(12844132-12844213)
[»] chr4 (2 HSPs)
chr4 (312-389)||(32594961-32595038)
chr4 (413-529)||(32593906-32594017)


Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 308 - 561
Target Start/End: Original strand, 18724598 - 18724850
Alignment:
Q  308 ctttacttcgacactccttagaccagtgtctgacacgtatatatcacttaaaagaggcgtgtcagacaactcagacaaatatttggannnnnnnnnctac 407  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |         ||||    
T  18724598 ctttacttcgacactccttagaccagtgtctgacacctatatatcacttaaaagaggcgtgtcagacaactcagacaaatatctg-aattttttctctac 18724696  T
Q  408 ttccgcacatagtagattcaagagttaaagatgtgtgagaaatgttgatcaacgaggaattatagacatcaaagttgatgacagcgcatttaaattttcc 507  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18724697 ttccgcacatagtagattcaagagttaaagatgtgtgagaaatgctgatcaacgaggaattatagacatcaaagttgatgacagcgcatttaaattttcc 18724796  T
Q  508 aatagtagatggataaagaaagatctgatgaaataaattactccatttatatgc 561  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  18724797 aatagtagatggataaagaaaggtctgatgaaataaattactccatttgtatgc 18724850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 18724100 - 18724243
Alignment:
Q  8 ttggatgcattcacattttactcgcttggagcttatgtaacagaaacattaagaaaagtgtaaactctcatgctccttcaactgtgaaaaggagaattta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  18724100 ttggatgcattcacattttactcgcttggagcttatgtaacagaaacataaagaaaagtgtaaactctcatgctccttgaactgtgaacaggagaattta 18724199  T
Q  108 caagatatgcagaaaaagaaactgtaaaaatatatatacaacta 151  Q
    || ||||||||||||||| ||||| |||||||||||||||||||    
T  18724200 caggatatgcagaaaaaggaactgaaaaaatatatatacaacta 18724243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 308 - 529
Target Start/End: Complemental strand, 17651560 - 17651339
Alignment:
Q  308 ctttacttcgacactccttagaccagtgtctgacacgtatatatcacttaaaagaggcgtgtcagacaactcagacaaatatttggannnnnnnnnctac 407  Q
    ||||||||||||||||||| |||| ||||| ||||| |||||| |||||| | |||||||||| ||||||| |||||||||| | ||         || |    
T  17651560 ctttacttcgacactcctttgaccggtgtccgacacttatataacacttatatgaggcgtgtcggacaacttagacaaatatctagatttatttttctgc 17651461  T
Q  408 ttccgcacatagtagattcaagagttaaagatgtgtgagaaatgttgatcaacgaggaattatagacatcaaagttgatgacagcgcatttaaattttcc 507  Q
    || | |||| | |||||||||||||||||| ||||||| |||||||||||||||||   |||||||||| ||||||||| ||| || |||||| |||| |    
T  17651460 tttcacacacaatagattcaagagttaaaggtgtgtgaaaaatgttgatcaacgagaggttatagacattaaagttgattacaacgtatttaagtttttc 17651361  T
Q  508 aatagtagatggataaagaaag 529  Q
    ||||||||||||||||| ||||    
T  17651360 aatagtagatggataaataaag 17651339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 309 - 523
Target Start/End: Complemental strand, 41849306 - 41849094
Alignment:
Q  309 tttacttcgacactccttagaccagtgtctgacacgtatatatcacttaaaagaggcgtgtcagacaactcagacaaatatttggannnnnnnnnctact 408  Q
    |||| ||||||||||||| |||  ||||| ||||| |||||| |||||| | |||||||||| ||||||||| |||||| | || |         || ||    
T  41849306 tttatttcgacactccttggactggtgtccgacacctatataacacttatatgaggcgtgtcggacaactcaaacaaatgtctgaatttttttctctgct 41849207  T
Q  409 tccgcacatagtagattcaagagttaaagatgtgtgagaaatgttgatcaacgaggaattatagacatcaaagttgatgacagcgcatttaaattttcca 508  Q
    |||  ||||||||||||||||| |||||||||||||||||| ||||| |||||||| ||| | ||||| ||||||||| |||  |  ||| |||||| ||    
T  41849206 tcc--acatagtagattcaagaattaaagatgtgtgagaaaagttgagcaacgaggcattctggacattaaagttgattacaatgttttttaatttttca 41849109  T
Q  509 atagtagatggataa 523  Q
    ||| || ||||||||    
T  41849108 ataataaatggataa 41849094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 413 - 529
Target Start/End: Complemental strand, 16426629 - 16426512
Alignment:
Q  413 cacatagtagattcaagag-ttaaagatgtgtgagaaatgttgatcaacgaggaattatagacatcaaagttgatgacagcgcatttaaattttccaata 511  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||| ||||||||||||| |||||    
T  16426629 cacatagtagattcaaggggttaaagatgtgtgagaaatgttgatcaacgaggagttatagacattaaagttgattacagtgcatttaaatttttcaata 16426530  T
Q  512 gtagatggataaagaaag 529  Q
     ||||| |||||| ||||    
T  16426529 atagatagataaataaag 16426512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 418 - 518
Target Start/End: Original strand, 50127132 - 50127232
Alignment:
Q  418 agtagattcaagagttaaagatgtgtgagaaatgttgatcaacgaggaattatagacatcaaagttgatgacagcgcatttaaattttccaatagtagat 517  Q
    |||||||||||||||||||||||| |||||||| ||||| |||||||  |||||||||| ||||||||   ||||||||||||||||| | |||||||||    
T  50127132 agtagattcaagagttaaagatgtatgagaaatattgattaacgaggggttatagacattaaagttgaatgcagcgcatttaaatttttcgatagtagat 50127231  T
Q  518 g 518  Q
    |    
T  50127232 g 50127232  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 420 - 529
Target Start/End: Complemental strand, 3387844 - 3387735
Alignment:
Q  420 tagattcaagagttaaagatgtgtgagaaatgttgatcaacgaggaattatagacatcaaagttgatgacagcgcatttaaattttccaatagtagatgg 519  Q
    ||||||||||||||||||||||||||||||||||||||||  | |  |||||||||| ||||||||| ||| ||  |||||||||| | || |||||||     
T  3387844 tagattcaagagttaaagatgtgtgagaaatgttgatcaatcaagggttatagacattaaagttgattacaacgtttttaaatttttcgatggtagatga 3387745  T
Q  520 ataaagaaag 529  Q
    ||||| ||||    
T  3387744 ataaataaag 3387735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 413 - 529
Target Start/End: Complemental strand, 209385 - 209269
Alignment:
Q  413 cacatagtagattcaagagttaaagatgtgtgagaaatgttgatcaacgaggaattatagacatcaaagttgatgacagcgcatttaaattttccaatag 512  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||  |||| ||||| |||||| || ||| ||  |||||||||| | || |    
T  209385 cacatggtagattcaagagttaaagatttgtgagaaatgttgatcaacgaggggttatcgacattaaagtttattacaacgtttttaaatttttcgattg 209286  T
Q  513 tagatggataaagaaag 529  Q
    |||||||||||| ||||    
T  209285 tagatggataaataaag 209269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 422 - 529
Target Start/End: Original strand, 9729851 - 9729958
Alignment:
Q  422 gattcaagagttaaagatgtgtgagaaatgttgatcaacgaggaattatagacatcaaagttgatgacagcgcatttaaattttccaatagtagatggat 521  Q
    |||||||||||||||||||||||||||||||||||||||||    || |  |||| ||||||||| ||| |||||||||||||| | ||||||| |||||    
T  9729851 gattcaagagttaaagatgtgtgagaaatgttgatcaacgaaaggttttttacattaaagttgattacaacgcatttaaatttttcgatagtaggtggat 9729950  T
Q  522 aaagaaag 529  Q
    ||| ||||    
T  9729951 aaataaag 9729958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 407 - 486
Target Start/End: Original strand, 11820489 - 11820568
Alignment:
Q  407 cttccgcacatagtagattcaagagttaaagatgtgtgagaaatgttgatcaacgaggaattatagacatcaaagttgat 486  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||| |||| ||||    
T  11820489 cttccacacacagtagattcaagagttaaagatgtgtgagaaatgttgatcaacgaagggttatagacattaaagatgat 11820568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 413 - 532
Target Start/End: Complemental strand, 27994101 - 27993979
Alignment:
Q  413 cacatagtagattcaagagttaaagatgtgtgagaaatgttgatcaacgaggaattatagacatcaaagttgatgaca---gcgcatttaaattttccaa 509  Q
    |||| ||||||||||||||||||||||||||||||||| || ||||| ||||  |||||||||| |||||| || |||   ||   |||||||||| | |    
T  27994101 cacacagtagattcaagagttaaagatgtgtgagaaatatttatcaaggagggtttatagacattaaagtttattacaaatgcatttttaaatttttcga 27994002  T
Q  510 tagtagatggataaagaaagatc 532  Q
    | ||||||||||||| |||||||    
T  27994001 tggtagatggataaataaagatc 27993979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 418 - 486
Target Start/End: Original strand, 11815490 - 11815557
Alignment:
Q  418 agtagattcaagagttaaagatgtgtgagaaatgttgatcaacgaggaattatagacatcaaagttgat 486  Q
    ||||||||||||||||| |||||| |||||||||||||||||||| || ||||||| || |||||||||    
T  11815490 agtagattcaagagttagagatgtttgagaaatgttgatcaacga-gagttatagatattaaagttgat 11815557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 413 - 464
Target Start/End: Complemental strand, 48598504 - 48598453
Alignment:
Q  413 cacatagtagattcaagagttaaagatgtgtgagaaatgttgatcaacgagg 464  Q
    ||||| || |||||||||||||||||||||||||||||||||||||| ||||    
T  48598504 cacatcgtggattcaagagttaaagatgtgtgagaaatgttgatcaatgagg 48598453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 408 - 505
Target Start/End: Original strand, 11810876 - 11810973
Alignment:
Q  408 ttccgcacatagtagattcaagagttaaagatgtgtgagaaatgttgatcaacgaggaattatagacatcaaagttgatgacagcgcatttaaatttt 505  Q
    |||| |||| ||||||||||||||||||||   |||||||||||||||||| |||||  |||||||||| |||  |||| || |||  ||||||||||    
T  11810876 ttccacacaaagtagattcaagagttaaagccttgtgagaaatgttgatcagcgagggtttatagacataaaaaatgataacggcgtttttaaatttt 11810973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 413 - 449
Target Start/End: Original strand, 11812535 - 11812571
Alignment:
Q  413 cacatagtagattcaagagttaaagatgtgtgagaaa 449  Q
    |||| ||||||||||||||||||||||||||||||||    
T  11812535 cacacagtagattcaagagttaaagatgtgtgagaaa 11812571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 486
Target Start/End: Original strand, 11814358 - 11814438
Alignment:
Q  407 cttccgcacatagtagattcaagagttaaagatgtgtga-gaaatgttgatcaacgaggaattatagacatcaaagttgat 486  Q
    ||||| |||| | |||||||||||||||||||||||| |  |||| |||||||||||||  |||||||||| || ||||||    
T  11814358 cttccacacacaatagattcaagagttaaagatgtgtaacaaaatattgatcaacgaggggttatagacattaatgttgat 11814438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 308 - 380
Target Start/End: Original strand, 11816795 - 11816867
Alignment:
Q  308 ctttacttcgacactccttagaccagtgtctgacacgtatatatcacttaaaagaggcgtgtcagacaactca 380  Q
    ||||| |||||||||||| ||| | ||||||||||| |||||  |||||| | |||| ||||| |||||||||    
T  11816795 ctttatttcgacactcctaagatccgtgtctgacacttatatgacacttatatgaggtgtgtcggacaactca 11816867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 407 - 524
Target Start/End: Complemental strand, 13097640 - 13097523
Alignment:
Q  407 cttccgcacatagtagattcaagagttaaagatgtgtgagaaatgttgatcaacgaggaattatagacatcaaagttgatgacagcgcatttaaattttc 506  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||   |||| ||||| ||||||||| | | |   ||| ||||||     
T  13097640 cttccacacacagtagattcaagagttaaagatgtgtgagaaatgttgatcaacaagaggttatggacattaaagttgattaaaacattttttaattttt 13097541  T
Q  507 caatagtagatggataaa 524  Q
    |||||||||||| |||||    
T  13097540 caatagtagatgaataaa 13097523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 420 - 529
Target Start/End: Original strand, 18393524 - 18393633
Alignment:
Q  420 tagattcaagagttaaagatgtgtgagaaatgttgatcaacgaggaattatagacatcaaagttgatgacagcgcatttaaattttccaatagtagatgg 519  Q
    ||||||||||||||||||||||| ||||||||||||||||  | |  |||||||||| ||||||||| ||| ||  ||||||||||   |||||||||||    
T  18393524 tagattcaagagttaaagatgtgcgagaaatgttgatcaatcaagggttatagacattaaagttgattacaacgtttttaaattttttgatagtagatgg 18393623  T
Q  520 ataaagaaag 529  Q
    ||||| ||||    
T  18393624 ataaataaag 18393633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 435 - 529
Target Start/End: Complemental strand, 27401997 - 27401903
Alignment:
Q  435 aagatgtgtgagaaatgttgatcaacgaggaattatagacatcaaagttgatgacagcgcatttaaattttccaatagtagatggataaagaaag 529  Q
    ||||||||||| ||||||||||||||||||  |||||||||| ||||||||| ||| ||  |||   | || |||||||||||||||||| ||||    
T  27401997 aagatgtgtgaaaaatgttgatcaacgaggggttatagacattaaagttgattacaacgtttttttttctttcaatagtagatggataaataaag 27401903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 462
Target Start/End: Original strand, 2889701 - 2889756
Alignment:
Q  407 cttccgcacatagtagattcaagagttaaagatgtgtgagaaatgttgatcaacga 462  Q
    ||||| ||||||||| |||||||||||||||| ||| |  ||||||||||||||||    
T  2889701 cttccacacatagtatattcaagagttaaagacgtgcggaaaatgttgatcaacga 2889756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 3160020 - 3159971
Alignment:
Q  413 cacatagtagattcaagagttaaagatgtgtgagaaatgttgatcaacga 462  Q
    ||||||||| |||||||||||||||| ||| |  ||||||||||||||||    
T  3160020 cacatagtatattcaagagttaaagacgtgcggaaaatgttgatcaacga 3159971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 389
Target Start/End: Original strand, 15131819 - 15131900
Alignment:
Q  308 ctttacttcgacactccttagaccagtgtctgacacgtatatatcacttaaaagaggcgtgtcagacaactcagacaaatat 389  Q
    ||||||||||||||||||  |||| ||||| ||||| |||||| |||| | | |||  |||||  |||||||||||||||||    
T  15131819 ctttacttcgacactcctacgaccggtgtccgacacctatataacactcatatgagcagtgtcgaacaactcagacaaatat 15131900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 308 - 392
Target Start/End: Complemental strand, 13097741 - 13097657
Alignment:
Q  308 ctttacttcgacactccttagaccagtgtctgacacgtatatatcacttaaaagaggcgtgtcagacaactcagacaaatatttg 392  Q
    |||||||  ||||||||||||||| ||||  ||||| |||||| |||||| | || ||||||| ||||| ||| |||||| ||||    
T  13097741 ctttactgtgacactccttagaccggtgtgcgacacctatataacacttatatgaagcgtgtcggacaattcaaacaaatgtttg 13097657  T

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Target: scaffold1723 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 413 - 529
Target Start/End: Original strand, 304 - 419
Alignment:
Q  413 cacatagtagattcaagagttaaagatgtgtgagaaatgttgatcaacgaggaattatagacatcaaagttgatgacagcgcatttaaattttccaatag 512  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||| | |  |||| |||||||||||||||  || || |||| |||||| | ||||    
T  304 cacacagtagattcaagggttaaagatgtgtgagaaatgttgatcaacaatgggttatggacatcaaagttgattccaacgtatttcaatttt-cgatag 402  T
Q  513 tagatggataaagaaag 529  Q
     ||||||||||| ||||    
T  403 cagatggataaataaag 419  T

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Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 407 - 518
Target Start/End: Original strand, 42718559 - 42718669
Alignment:
Q  407 cttccgcacatagtagattcaagagttaaagatgtgtgagaaatgttgatcaacgaggaattatagacatcaaagttgatgacagcgcatttaaattttc 506  Q
    ||||| |||| | |||||| |||||||||| | |||||||||||||||| |||||||| |||||| |||| |||||||||  || |||||||||| |||     
T  42718559 cttccacacacaatagatttaagagttaaa-acgtgtgagaaatgttgaacaacgagggattataaacattaaagttgattccaacgcatttaaaatttt 42718657  T
Q  507 caatagtagatg 518  Q
    ||||||||||||    
T  42718658 caatagtagatg 42718669  T

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Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 421 - 529
Target Start/End: Complemental strand, 2602275 - 2602169
Alignment:
Q  421 agattcaagagttaaagatgtgtgagaaatgttgatcaacgaggaattatagacatcaaagttgatgacagcgcatttaaattttccaatagtagatgga 520  Q
    ||||||||||||||||  | |||||||||||||||||||| |||  ||||| |||| ||||||||| ||| | |||||||||||| | |||||| |||||    
T  2602275 agattcaagagttaaa--tctgtgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatgga 2602178  T
Q  521 taaagaaag 529  Q
    |||| ||||    
T  2602177 taaataaag 2602169  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 407 - 486
Target Start/End: Complemental strand, 17261796 - 17261717
Alignment:
Q  407 cttccgcacatagtagattcaagagttaaagatgtgtgagaaatgttgatcaacgaggaattatagacatcaaagttgat 486  Q
    ||||| |||| | |||||| ||||||||||||||||||||||||||||||||| ||||  ||||  |||| |||||||||    
T  17261796 cttccacacacattagatttaagagttaaagatgtgtgagaaatgttgatcaatgaggggttatgtacattaaagttgat 17261717  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 414 - 464
Target Start/End: Complemental strand, 6812686 - 6812636
Alignment:
Q  414 acatagtagattcaagagttaaagatgtgtgagaaatgttgatcaacgagg 464  Q
    |||| ||||||||||||||||||||||| | | || |||||||||||||||    
T  6812686 acatggtagattcaagagttaaagatgtttaaaaattgttgatcaacgagg 6812636  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 389
Target Start/End: Complemental strand, 12844213 - 12844132
Alignment:
Q  308 ctttacttcgacactccttagaccagtgtctgacacgtatatatcacttaaaagaggcgtgtcagacaactcagacaaatat 389  Q
    |||||||||||||||||| ||| |  |||||||||| |||||| |||| | | |||  ||||||||||||||| ||| ||||    
T  12844213 ctttacttcgacactcctaagatcgatgtctgacacttatataacactcatacgagctgtgtcagacaactcacacagatat 12844132  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 312 - 389
Target Start/End: Complemental strand, 32595038 - 32594961
Alignment:
Q  312 acttcgacactccttagaccagtgtctgacacgtatatatcacttaaaagaggcgtgtcagacaactcagacaaatat 389  Q
    ||||| || |||||| ||||||||| |||||| |||||| |||||| | ||||||||| ||| |||||||||||||||    
T  32595038 acttcaacgctccttggaccagtgtttgacacttatataacacttatatgaggcgtgttagataactcagacaaatat 32594961  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 529
Target Start/End: Complemental strand, 32594017 - 32593906
Alignment:
Q  413 cacatagtagattcaagagttaaagatgtgtgagaaatgttgatcaacgaggaattatagacatcaaagttgatgacagcgcatttaaattttccaatag 512  Q
    |||| |||||||||||||||||||||  ||||||||||||||||||| ||||| |  || |||| ||| ||||| ||| | ||||||||||||   | ||    
T  32594017 cacacagtagattcaagagttaaaga--tgtgagaaatgttgatcaatgaggagt--taaacattaaa-ttgattacaacacatttaaattttttgagag 32593923  T
Q  513 tagatggataaagaaag 529  Q
    |||||||||||| ||||    
T  32593922 tagatggataaataaag 32593906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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