View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5460-Insertion-6 (Length: 501)

Name: NF5460-Insertion-6
Description: NF5460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5460-Insertion-6
NF5460-Insertion-6
[»] chr5 (21 HSPs)
chr5 (218-501)||(3299141-3299424)
chr5 (218-501)||(3392034-3392317)
chr5 (289-501)||(1163942-1164154)
chr5 (290-501)||(1849612-1849823)
chr5 (7-160)||(3299482-3299635)
chr5 (7-160)||(3392375-3392528)
chr5 (296-501)||(38987343-38987548)
chr5 (296-501)||(40417933-40418138)
chr5 (25-160)||(1849914-1850049)
chr5 (25-160)||(1163690-1163822)
chr5 (22-160)||(39879763-39879898)
chr5 (22-160)||(40418232-40418367)
chr5 (22-160)||(38987654-38987789)
chr5 (22-160)||(39726367-39726502)
chr5 (296-442)||(39726115-39726261)
chr5 (296-442)||(39879517-39879663)
chr5 (22-160)||(39168795-39168930)
chr5 (22-159)||(39399809-39399943)
chr5 (275-442)||(39168603-39168770)
chr5 (296-442)||(39399601-39399750)
chr5 (304-454)||(40596325-40596469)
[»] chr4 (3 HSPs)
chr4 (294-500)||(25912528-25912734)
chr4 (22-160)||(25912292-25912427)
chr4 (28-94)||(44444772-44444838)


Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 218 - 501
Target Start/End: Complemental strand, 3299424 - 3299141
Alignment:
Q  218 tacaactcaataatcagcttcttcttctctttattctcctccaccaactcctctaattcctccttgaggttaataccaagaacaacatattccactaact 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3299424 tacaactcaataatcagcttcttcttctctttattctcctccaccaactcctctaattcctccttgaggttaataccgagaacaacatattccactaact 3299325  T
Q  318 gaggcctagagaatgaaggagtgaagggtgcattccagtactgatcagactttaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaatgtttt 417  Q
    ||||||||||||||||||| ||||||||||||| |||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3299324 gaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaatatttt 3299225  T
Q  418 ggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaataatcaaatcccc 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299224 ggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaataatcaaatcccc 3299141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 218 - 501
Target Start/End: Complemental strand, 3392317 - 3392034
Alignment:
Q  218 tacaactcaataatcagcttcttcttctctttattctcctccaccaactcctctaattcctccttgaggttaataccaagaacaacatattccactaact 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3392317 tacaactcaataatcagcttcttcttctctttattctcctccaccaactcctctaattcctccttgaggttaataccgagaacaacatattccactaact 3392218  T
Q  318 gaggcctagagaatgaaggagtgaagggtgcattccagtactgatcagactttaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaatgtttt 417  Q
    ||||||||||||||||||| ||||||||||||| |||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3392217 gaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaatatttt 3392118  T
Q  418 ggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaataatcaaatcccc 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392117 ggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaataatcaaatcccc 3392034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 289 - 501
Target Start/End: Original strand, 1163942 - 1164154
Alignment:
Q  289 aataccaagaacaacatattccactaactgaggcctagagaatgaaggagtgaagggtgcattccagtactgatcagactttaagaaacagtgggtcaag 388  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| ||| ||||||||||||||||||||||    
T  1163942 aataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaag 1164041  T
Q  389 gtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaa 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  1164042 gtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaa 1164141  T
Q  489 taatcaaatcccc 501  Q
    |||||||||||||    
T  1164142 taatcaaatcccc 1164154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 290 - 501
Target Start/End: Complemental strand, 1849823 - 1849612
Alignment:
Q  290 ataccaagaacaacatattccactaactgaggcctagagaatgaaggagtgaagggtgcattccagtactgatcagactttaagaaacagtgggtcaagg 389  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||  |||||| ||||||||||||| |||||||||    
T  1849823 ataccgagaacaacatattccactaactgatgcctagagaatgaaggcgtgaagggtgcatcccagtaacgatcagcctttaagaaacagcgggtcaagg 1849724  T
Q  390 taaatggatcaagcaaagtaaatgttttggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaat 489  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  1849723 taaatggatcaagcaaagtaaatgttctggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaat 1849624  T
Q  490 aatcaaatcccc 501  Q
    ||||||||||||    
T  1849623 aatcaaatcccc 1849612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 7 - 160
Target Start/End: Complemental strand, 3299635 - 3299482
Alignment:
Q  7 atctactcctccagaagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattatta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299635 atctactcctccagaagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattatta 3299536  T
Q  107 tttccaatatctttcacacgagcaaccatggcatcagctaaacgatattttttg 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299535 tttccaatatctttcacacgagcaaccatggcatcagctaaacgatattttttg 3299482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 7 - 160
Target Start/End: Complemental strand, 3392528 - 3392375
Alignment:
Q  7 atctactcctccagaagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattatta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392528 atctactcctccagaagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattatta 3392429  T
Q  107 tttccaatatctttcacacgagcaaccatggcatcagctaaacgatattttttg 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392428 tttccaatatctttcacacgagcaaccatggcatcagctaaacgatattttttg 3392375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 296 - 501
Target Start/End: Complemental strand, 38987548 - 38987343
Alignment:
Q  296 agaacaacatattccactaactgaggcctagagaatgaaggagtgaagggtgcattccagtactgatcagactttaagaaacagtgggtcaaggtaaatg 395  Q
    |||||||||||||| |||||||||| ||||  ||||||| | ||||| ||||| ||||||||||||| ||  | ||||||||||||||||||||||||||    
T  38987548 agaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaatg 38987449  T
Q  396 gatcaagcaaagtaaatgttttggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaataatcaa 495  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| ||| || |  ||||||||  |||||    
T  38987448 gatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaataggaccaatatttggacccaaagaagcaacaacattaggaggcagaaagatcaa 38987349  T
Q  496 atcccc 501  Q
    ||||||    
T  38987348 atcccc 38987343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 296 - 501
Target Start/End: Complemental strand, 40418138 - 40417933
Alignment:
Q  296 agaacaacatattccactaactgaggcctagagaatgaaggagtgaagggtgcattccagtactgatcagactttaagaaacagtgggtcaaggtaaatg 395  Q
    |||||||||||||| |||||||||| ||||  ||||||| | ||||| ||||| ||||||||||||| ||  | ||||||||||||||||||||||||||    
T  40418138 agaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaatg 40418039  T
Q  396 gatcaagcaaagtaaatgttttggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaataatcaa 495  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||| ||| || |  ||||||||  |||||    
T  40418038 gatcaagcaaagtaaatgttttggcaaccctagtgcaaatgacaataggaccaatattttcaccgaaagaagcaacaacattaggaggcagaaagatcaa 40417939  T
Q  496 atcccc 501  Q
    ||||||    
T  40417938 atcccc 40417933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 25 - 160
Target Start/End: Complemental strand, 1850049 - 1849914
Alignment:
Q  25 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcaca 124  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1850049 caggtcataaccaagagcatggtcaccaggttttaaaatacgactaagatgagtcctgatttgaaaagttgtgtgattattatttccaatatctttcaca 1849950  T
Q  125 cgagcaaccatggcatcagctaaacgatattttttg 160  Q
    |||||||| ||||||| |||||||||||||||||||    
T  1849949 cgagcaactatggcattagctaaacgatattttttg 1849914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 25 - 160
Target Start/End: Original strand, 1163690 - 1163822
Alignment:
Q  25 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcaca 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   |||||||||||||||||||||||||| |||    
T  1163690 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaa---gtgtgattattatttccaatatctttgaca 1163786  T
Q  125 cgagcaaccatggcatcagctaaacgatattttttg 160  Q
    |||||||| ||||||| |||||||||||||||||||    
T  1163787 cgagcaactatggcattagctaaacgatattttttg 1163822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 39879898 - 39879763
Alignment:
Q  22 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||   | |||||||||| ||||||||    
T  39879898 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc 39879802  T
Q  122 acacgagcaaccatggcatcagctaaacgatattttttg 160  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  39879801 acacgagcaaccacagcatcagctaaacgatattttttg 39879763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 40418367 - 40418232
Alignment:
Q  22 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||   | |||||||||||||||||||    
T  40418367 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccaatatctttc 40418271  T
Q  122 acacgagcaaccatggcatcagctaaacgatattttttg 160  Q
    |||||||||||||  ||||||||||||| ||||||||||    
T  40418270 acacgagcaaccacagcatcagctaaacaatattttttg 40418232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 38987789 - 38987654
Alignment:
Q  22 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 121  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||   | |||||||||| ||||||||    
T  38987789 agacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc 38987693  T
Q  122 acacgagcaaccatggcatcagctaaacgatattttttg 160  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  38987692 acacgagcaaccacagcatcagctaaacgatattttttg 38987654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 39726502 - 39726367
Alignment:
Q  22 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 121  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||   | |||||||||| ||||||||    
T  39726502 agacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc 39726406  T
Q  122 acacgagcaaccatggcatcagctaaacgatattttttg 160  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  39726405 acacgagcaaccacagcatcagctaaacgatattttttg 39726367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 296 - 442
Target Start/End: Complemental strand, 39726261 - 39726115
Alignment:
Q  296 agaacaacatattccactaactgaggcctagagaatgaaggagtgaagggtgcattccagtactgatcagactttaagaaacagtgggtcaaggtaaatg 395  Q
    |||||||||||||| |||||||||| ||||  ||||||| | ||||| ||||| ||||||||||||| ||  | ||||||||||||||||||||||||||    
T  39726261 agaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaatg 39726162  T
Q  396 gatcaagcaaagtaaatgttttggcaaccctagtacaaatgacaata 442  Q
    |||||||||||||||||||||||||||||||||| || |||||||||    
T  39726161 gatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaata 39726115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 296 - 442
Target Start/End: Complemental strand, 39879663 - 39879517
Alignment:
Q  296 agaacaacatattccactaactgaggcctagagaatgaaggagtgaagggtgcattccagtactgatcagactttaagaaacagtgggtcaaggtaaatg 395  Q
    |||||||||||||| |||||||||| ||||  ||||||| | ||||| ||||| ||||||||||||| ||  | ||||||||||||||||||||||||||    
T  39879663 agaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaatg 39879564  T
Q  396 gatcaagcaaagtaaatgttttggcaaccctagtacaaatgacaata 442  Q
    |||||||||||||||||||||||||||||||||| || |||||||||    
T  39879563 gatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaata 39879517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 39168930 - 39168795
Alignment:
Q  22 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 121  Q
    ||||| ||||||||||||||||| |||||||| |||||||||| |||| |||||||| ||||||||||||||||||   | ||||||||||| ||||| |    
T  39168930 agacaagtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtg---tcattatttccaaaatcttcc 39168834  T
Q  122 acacgagcaaccatggcatcagctaaacgatattttttg 160  Q
    ||||||||||||| |||||||||||| ||||||||||||    
T  39168833 acacgagcaaccacggcatcagctaaccgatattttttg 39168795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 39399943 - 39399809
Alignment:
Q  22 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 121  Q
    ||||| ||||||||||||||||| |||||||| |||||||||| |||||||||||||| |||||||||||||||||   | ||||||||||| || || |    
T  39399943 agacaagtcataaccaagagcatagtcaccggattttaaaatatgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccaaaattttcc 39399847  T
Q  122 acacgagcaaccatggcatcagctaaacgatatttttt 159  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  39399846 acacgagcaaccacggcatcagctaaacggtatttttt 39399809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 275 - 442
Target Start/End: Complemental strand, 39168770 - 39168603
Alignment:
Q  275 tcctccttgaggttaataccaagaacaacatattccactaactgaggcctagagaatgaaggagtgaagggtgcattccagtactgatcagactttaaga 374  Q
    ||||||| ||||  |||| ||||||||||||||| ||||||||||| ||||| ||||||| | |||||||||||||||||||||| ||||| |||||||     
T  39168770 tcctcctggaggacaatatcaagaacaacatatttcactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactcatcagcctttaagg 39168671  T
Q  375 aacagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaatgacaata 442  Q
    || |    |||||||||||||||||||| ||||||| | |||||||||||||||| || || ||||||    
T  39168670 aaaaagcagtcaaggtaaatggatcaagtaaagtaatttttttggcaaccctagtgcatataacaata 39168603  T

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Target: chr5; HSP #20
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 296 - 442
Target Start/End: Complemental strand, 39399750 - 39399601
Alignment:
Q  296 agaacaacatattccactaactgaggcctagagaatgaaggagtgaagggtgcattccagtactgatcagactttaagaaacagtgggtcaaggtaaatg 395  Q
    ||||||| |||||  |||||||||| ||||  ||||||| | ||||| |||||||||||||| ||||||| ||||||| || |   ||||||||||||||    
T  39399750 agaacaaaatatttgactaactgagtcctattgaatgaatgcgtgaaaggtgcattccagtagtgatcagcctttaaggaaaaagcggtcaaggtaaatg 39399651  T
Q  396 gatcaagcaa---agtaaatgttttggcaaccctagtacaaatgacaata 442  Q
    ||||||||||   ||||| | |||||||||||||||| || |||||||||    
T  39399650 gatcaagcaaagtagtaatttttttggcaaccctagtgcatatgacaata 39399601  T

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Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 304 - 454
Target Start/End: Complemental strand, 40596469 - 40596325
Alignment:
Q  304 atattccactaactgaggcctagagaatgaaggagtgaagggtgcattccagtactgatcagactttaagaaacagtgggtcaaggtaaatggatcaagc 403  Q
    ||||||||||||||||  ||||| || |||||| |||||  ||||||||||||||||||||   ||||||| |||||   ||||||| ||   |||||||    
T  40596469 atattccactaactgactcctagtgagtgaaggcgtgaaaagtgcattccagtactgatcaacatttaagatacagtacctcaaggtgaa--aatcaagc 40596372  T
Q  404 aaagtaaatgttttggcaaccctagtacaaatgacaataggaccaatattt 454  Q
    ||||||| | |||| ||||||    ||||||||| |||||||| |||||||    
T  40596371 aaagtaattcttttagcaacc----tacaaatgataataggactaatattt 40596325  T

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Target: chr4 (Bit Score: 131; Significance: 9e-68; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 294 - 500
Target Start/End: Original strand, 25912528 - 25912734
Alignment:
Q  294 caagaacaacatattccactaactgaggcctagagaatgaaggagtgaagggtgcattccagtactgatcagactttaagaaacagtgggtcaaggtaaa 393  Q
    ||||||||| |||||| |||||||||||||||| |||| |||| |||||||||||||||||||||||||||| ||| |||||||| || |||||||||||    
T  25912528 caagaacaatatattcaactaactgaggcctagtgaattaaggcgtgaagggtgcattccagtactgatcagccttcaagaaacaatgagtcaaggtaaa 25912627  T
Q  394 tggatcaagcaaagtaaatgttttggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaataatc 493  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||  || |||||||||||||| || |  |||||||| ||||    
T  25912628 tggatcaagtaaagtaaatgttttggcaaccctagtgcaaatgacaataggaccaatatttacactgaaagaagcagcaacattaggaggcagaaaaatc 25912727  T
Q  494 aaatccc 500  Q
    |||||||    
T  25912728 aaatccc 25912734  T

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Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 22 - 160
Target Start/End: Original strand, 25912292 - 25912427
Alignment:
Q  22 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 121  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||   | |||||||||||||||||||    
T  25912292 agacaggtcataaccaagagcatggtcatcgggttttagaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccaatatctttc 25912388  T
Q  122 acacgagcaaccatggcatcagctaaacgatattttttg 160  Q
    |||||||||||||   |||||||||||||||||||||||    
T  25912389 acacgagcaaccacatcatcagctaaacgatattttttg 25912427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 44444772 - 44444838
Alignment:
Q  28 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagtt 94  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44444772 gtcataaccaagagcatagtcaccaggttttaaaatacgaccaagatgagtcttgatttgaaaagtt 44444838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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