View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5460-Insertion-7 (Length: 460)
Name: NF5460-Insertion-7
Description: NF5460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5460-Insertion-7 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 130 - 460
Target Start/End: Complemental strand, 34895989 - 34895666
Alignment:
| Q |
130 |
attagcaacaaaaactcataccaaaacccaaagccaatttaaaacaatatcatttgttgaaaattataagtggtttgatcaaaatcaaatagctcacatt |
229 |
Q |
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| T |
34895989 |
attagcaacaaaaactcataccaaaacccaaagccaatttaaaacaatatcatttgttgaaaattataagtcgtttgatcaaaatcaaatagctcacatt |
34895890 |
T |
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| Q |
230 |
tttaacgacgtgatttgagtcggtatataacattaaattacaaaccgtacgatttagattggacagtccaaaatatgcaaatgcaactcatgtnnnnnnn |
329 |
Q |
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| T |
34895889 |
tttaacgacgtgatttgagt-agtatataacattaaattacaaaccatacgatttagattgaacggtccaaaatatgcaaatgcaactcatgtaaaaaaa |
34895791 |
T |
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| Q |
330 |
cataattgcaaccaaaacaaacaagtaacatcttgatcttcactatacaaacattcaaatgcaaataaacccaaaataatactatgccctgtccttttca |
429 |
Q |
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| T |
34895790 |
cataattgcaaccaaaacaaacaagcaac------atctccactatacaaacattcaaatgcaaataaacccaaaataatactatgccctgtccttttca |
34895697 |
T |
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| Q |
430 |
ttctgagtctctctctgctcactcaataaat |
460 |
Q |
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| T |
34895696 |
ttctgagtctctctcaagtcactcaataaat |
34895666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 34896112 - 34896051
Alignment:
| Q |
7 |
actcctacatatcaatgttttctacactttaatgtacccatatattaacctcaaaggaggta |
68 |
Q |
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| T |
34896112 |
actcctacatatcaatgttttctacactttaatgtacccatatattaacctcaaaggaggta |
34896051 |
T |
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