View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5460-Insertion-8 (Length: 460)
Name: NF5460-Insertion-8
Description: NF5460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5460-Insertion-8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 8 - 460
Target Start/End: Original strand, 33390953 - 33391402
Alignment:
| Q |
8 |
acaattgctccaatagctttatgttgaagaatcaaaagttgaggagaccaacctcttataattagtccctttcctttcattcttttctcaaattctagaa |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33390953 |
acaattgctccaatagctttatgttgaagaatcaaaagttgaggagaccaacctcttataattagtccctttcctttcattcttttctcaaattctagaa |
33391052 |
T |
|
| Q |
108 |
gacctttaatttctctatcttctgcatttttcttcaccacccaaacaaaatctttccccgatgcttcgagtcccatagcaatttctttaagctgagagtt |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33391053 |
gacctttaatttctctatcttctgcatttttcttcaccacccaaacaaaatctttccccgatgcttcgagtcccatagcaatttctttaagctgagagtt |
33391152 |
T |
|
| Q |
208 |
aagaaagtgatttttacttccaaagcacacataaacaattgatgagttgatatcttttgtgtcaagccactttagacactcatgtttattgatagagggt |
307 |
Q |
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||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33391153 |
aaggaagtgatttttacttccaaagcacacataaacaat---tgagttgatatcttttgtgtcaagccactttagacactcatgtttattgatagagggt |
33391249 |
T |
|
| Q |
308 |
tcttttatgcagtatgatgtatccatatctctgttgtaaactgagaatggacctatatgccattcnnnnnnnccaagaatctctctataataatcagtat |
407 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| || |
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| T |
33391250 |
tcttttctgcagtatgatgtatccatatctctgttgtaaactgagaatggacctatatgccattctttttttccaagaacctctctataataatcagcat |
33391349 |
T |
|
| Q |
408 |
aaacaccatcaagctcatagaagctattgacaataacgccataactcctcgcc |
460 |
Q |
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| T |
33391350 |
aaacaccatcaagctcatagaagctattgacaataacgccataactcctcgcc |
33391402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 8 - 207
Target Start/End: Complemental strand, 33383101 - 33382902
Alignment:
| Q |
8 |
acaattgctccaatagctttatgttgaagaatcaaaagttgaggagaccaacctcttataattagtccctttcctttcattcttttctcaaa---ttcta |
104 |
Q |
| |
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|||| ||||||||| |||| |||| ||||||||| ||| || ||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
33383101 |
acaaatgctccaattgcttcgtgttcaagaatcaacgtttgcggcgaccaacctcttataattagtccctttccttccattcttttctcaaatccttctg |
33383002 |
T |
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| Q |
105 |
gaagacctttaat-ttctctatcttctgcatttttcttcaccacccaaacaaaatctttccccgatgcttcgagtcccatagcaatttctttaagctgag |
203 |
Q |
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| || | ||| ||||| ||||||| || || |||||||||||| |||| || ||| |||||||| |||||| ||||||||||||||||||||| |
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| T |
33383001 |
gtagcc----aatcttctccatcttctttgcttctcctcaccacccaaataaaaaattgcccggatgcttcaagtcccgtagcaatttctttaagctgag |
33382906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 8 - 457
Target Start/End: Complemental strand, 18989548 - 18989105
Alignment:
| Q |
8 |
acaattgctccaatagctttatgttgaagaatcaaaagttgaggagaccaacctcttataattagtccctttcctttcattcttttctcaaattctagaa |
107 |
Q |
| |
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|||| ||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||||||| |||||||||||||| | | |
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| T |
18989548 |
acaaatgctccaatagctttatgttgaaaaatcaaaagttgaagaggccaacctcttataattagtccttttcctttcattattttctcaaattctggta |
18989449 |
T |
|
| Q |
108 |
gacctttaatttctctatcttctgcatttttcttcaccacccaaacaaaatctttccccgatgcttcgagtcccatagcaatttctttaagctgagagtt |
207 |
Q |
| |
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||||||| ||||||||||||| ||||||||||||||| |||| |||||||||| |||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
18989448 |
gaccttt---ttctctatcttctctctttttcttcaccaccaaaactaaatctttccacgatgctttgagtcccatagaaatttctttaagctgagagtt |
18989352 |
T |
|
| Q |
208 |
aagaaagtgatttttacttccaaagcacacataaacaattgatgagttgatatcttttgtgtcaagccactttagacactcatgtttattgatagagggt |
307 |
Q |
| |
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||| ||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
18989351 |
aaggaagtgatttgtacttccaaagcacacataaacaa---ctaagttgatatcttttgtgtcaagccactttagacacttgtgtttattgatagagggt |
18989255 |
T |
|
| Q |
308 |
tcttttatgcagtatgatgtatccatatctctgttgtaaactgagaatggacctatatgccattcnnnnnnnccaagaatctctctataataatcagtat |
407 |
Q |
| |
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|||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| || ||||||||||||||||| || |
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| T |
18989254 |
tcttttccgcggtatgatgtatccatatctctgttgtaaactgagaatagacctatatgccattctttttttccaataaactctctataataatcagcat |
18989155 |
T |
|
| Q |
408 |
aaacaccatcaagctcatagaagctattgacaataacgccataactcctc |
457 |
Q |
| |
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||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
18989154 |
aaacaccgtcaagctcatagaagctattgataataacgccataactcctc |
18989105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 26 - 457
Target Start/End: Complemental strand, 19001964 - 19001539
Alignment:
| Q |
26 |
ttatgttgaagaatcaaaagttgaggagaccaacctcttataattagtccctttcctttcattcttttctcaaattctagaagacctttaatttctctat |
125 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| | || ||||| | ||| ||| |
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| T |
19001964 |
ttatgttgaagaatcaaaagttgaggagaccaacctcttataattagtccgtttcctttcatccttttctcaaattctggtagtcctttt-tctctatat |
19001866 |
T |
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| Q |
126 |
cttctgcatttttcttcaccacccaaacaaaatctttccccgatgcttcgagtcccatagcaatttctttaagctgagagttaagaaagtgatttttact |
225 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||| ||||||||| |||| |
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| T |
19001865 |
cttctctctttttcttcaccacccaaacaaaatctttccccgatgctttgagtcccatatcaatttctttaatctgagagttaaggaagtgatttgtact |
19001766 |
T |
|
| Q |
226 |
tccaaagcacacataaacaattgatgagttgatatcttttgtgtcaagccactttagacactcatgtttattgatagagggttcttttatgcagtatgat |
325 |
Q |
| |
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||||||| |||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
19001765 |
tccaaagaacacataaacaactga---gttgatatctt--gtgtcaagccactttagacactcatgtttattgatagagggttcttttccgcggtatgat |
19001671 |
T |
|
| Q |
326 |
gtatccatatctctgttgtaaactgagaatggacctatatgccattcnnnnnnnccaagaatctctctataataatcagtataaacaccatcaagctcat |
425 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| |||| |||| |||||||||| |
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| T |
19001670 |
gtatccatatctctgttgaaaactgagaatggacctatatcccattcattttgtccaagaacctctctataataatcagcataagcaccgtcaagctcat |
19001571 |
T |
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| Q |
426 |
agaagctattgacaataacgccataactcctc |
457 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |
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| T |
19001570 |
agaagctattgacaataatgccataactcctc |
19001539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 23 - 457
Target Start/End: Original strand, 27688735 - 27689175
Alignment:
| Q |
23 |
gctttatgttgaagaatcaaaagttgaggagaccaacctcttataattagtccctttcctttcattcttttctcaaattctagaaga--cctttaatttc |
120 |
Q |
| |
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|||| ||||| |||||||| | ||| |||||||||||||||||||||||||| ||||||| | |||||| ||| ||| || | | || || || | |
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| T |
27688735 |
gcttcatgttcaagaatcatcacttgtggagaccaacctcttataattagtccttttccttccgttctttcctcgaatccttcaggtagccattcat--c |
27688832 |
T |
|
| Q |
121 |
tctatcttctgcatttttcttcaccacccaaacaaaatctttccccgatgcttcgagtcccatagcaatttctttaagctgagagttaagaaagtgattt |
220 |
Q |
| |
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|| |||||||| | | || |||| ||||||| ||||| | ||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| | |
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| T |
27688833 |
tccatcttctgtctgtgtcctcacaacccaaataaaattatgccctgatgcttcgagtcccatagcaatttccttaagctgagagttaaggaagtgtgtc |
27688932 |
T |
|
| Q |
221 |
ttacttccaaagcacacataaacaattgatgagttgatatcttttgtgtcaagccactttagacactcatgtttattgatagagggttcttttatgcagt |
320 |
Q |
| |
|
|||||||||| |||| ||||||| ||||||||||| ||||||||||||||||||||||||||| ||||| | ||||| | ||||||| | || |
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| T |
27688933 |
atacttccaaaacacatgtaaacaa---ctgagttgatattttttgtgtcaagccactttagacactcgtgtttgtcaatagatgcttcttttcctcggt |
27689029 |
T |
|
| Q |
321 |
atgat-gta--------tccatatctctgttgtaaactgagaatggacctatatgccattcnnnnnnnccaagaatctctctataataatcagtataaac |
411 |
Q |
| |
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| ||| ||| ||| ||| ||| |||| || |||||||||||||||||||||||| ||||| | ||||||||||||||| | |||||| |
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| T |
27689030 |
acgatggtatttcttcctccttatttctattgtgaattgagaatggacctatatgccattcttttattccaagtacctctctataataatctgcataaac |
27689129 |
T |
|
| Q |
412 |
accatcaagctcatagaagctattgacaataacgccataactcctc |
457 |
Q |
| |
|
| || ||||||||||||||||| |||||||| || ||||||||| |
|
|
| T |
27689130 |
attctcgagctcatagaagctattaacaataactccgtaactcctc |
27689175 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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