View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5460-Insertion-9 (Length: 342)

Name: NF5460-Insertion-9
Description: NF5460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5460-Insertion-9
NF5460-Insertion-9
[»] chr5 (1 HSPs)
chr5 (8-342)||(36729207-36729541)


Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 8 - 342
Target Start/End: Complemental strand, 36729541 - 36729207
Alignment:
Q  8 ctttgaacatcattgtggaaaatggatacctcaataaatatgataggaatgatttccytaaaagtaatgatattaaatatgattatttagtcaacctttt 107  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||  |||||||||     
T  36729541 ctttgaacatcattgtggaaaatggatagctcaataaatatgatagaaatgatttccttaaaaataatgatattaaatatgattatttgttcaacctttg 36729442  T
Q  108 ttattcaaaaaatacaaagcctttatttattgctactcagactcgaatgactattgtcggtaatgtggaggatttggataagannnnnnnnaaacaataa 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||        ||||| |||    
T  36729441 ttattcaaaaaatacaaagcctttatttattgctactcagactcgaatgactattgtcggtaatgtagagaatttggataagattttttttaaacattaa 36729342  T
Q  208 aatgaacttcattgccaaaataaagagaatacaatcaaaacaattatatgttttttcctcaagaaaaacacatgtttgaacctaggactttcaaatcatt 307  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36729341 aatgaacttcattgccaaaataaagagaatacaatcaaaacacttatatgttttttcctcaagaaaaacacatgtttgaacctaggactttcaaatcatt 36729242  T
Q  308 agtaagaccgatagaacttcaaatttgagtacaat 342  Q
    ||||||||||||| |||||||||||||||||||||    
T  36729241 agtaagaccgataaaacttcaaatttgagtacaat 36729207  T

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