View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5460_high_1 (Length: 396)

Name: NF5460_high_1
Description: NF5460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5460_high_1
NF5460_high_1
[»] chr3 (14 HSPs)
chr3 (250-358)||(54734146-54734254)
chr3 (187-237)||(54528983-54529033)
chr3 (173-237)||(33148826-33148890)
chr3 (173-237)||(33450047-33450111)
chr3 (180-237)||(7546078-7546135)
chr3 (192-237)||(21566981-21567026)
chr3 (192-237)||(50663876-50663921)
chr3 (173-232)||(52311860-52311919)
chr3 (181-235)||(3540254-3540308)
chr3 (187-237)||(42947376-42947426)
chr3 (187-237)||(47064865-47064915)
chr3 (180-237)||(42951008-42951065)
chr3 (193-237)||(13843626-13843670)
chr3 (193-237)||(44430419-44430463)
[»] chr7 (14 HSPs)
chr7 (191-237)||(28138760-28138806)
chr7 (191-237)||(26009370-26009416)
chr7 (180-237)||(23345066-23345123)
chr7 (180-237)||(36325620-36325677)
chr7 (183-234)||(23344444-23344495)
chr7 (191-237)||(26011984-26012030)
chr7 (173-237)||(10526997-10527061)
chr7 (191-237)||(19931489-19931535)
chr7 (191-237)||(33839473-33839519)
chr7 (191-237)||(41957597-41957643)
chr7 (187-237)||(42548162-42548212)
chr7 (173-237)||(25428732-25428796)
chr7 (173-237)||(28139448-28139512)
chr7 (173-237)||(31852636-31852700)
[»] scaffold0163 (1 HSPs)
scaffold0163 (187-237)||(35777-35827)
[»] chr6 (7 HSPs)
chr6 (191-237)||(14153355-14153401)
chr6 (189-237)||(806546-806594)
chr6 (181-237)||(2559640-2559696)
chr6 (191-237)||(1826590-1826636)
chr6 (173-213)||(1826136-1826176)
chr6 (187-237)||(35060922-35060972)
chr6 (180-237)||(6819611-6819668)
[»] chr2 (9 HSPs)
chr2 (173-235)||(17797025-17797087)
chr2 (175-235)||(9539093-9539153)
chr2 (191-237)||(25389881-25389927)
chr2 (199-237)||(28360221-28360259)
chr2 (189-237)||(31133180-31133228)
chr2 (173-232)||(38147085-38147144)
chr2 (191-237)||(12965050-12965096)
chr2 (191-237)||(22788016-22788062)
chr2 (193-237)||(20685007-20685051)
[»] chr4 (7 HSPs)
chr4 (187-237)||(33164532-33164582)
chr4 (192-237)||(38677694-38677739)
chr4 (187-237)||(28796621-28796671)
chr4 (187-237)||(36217871-36217921)
chr4 (183-237)||(37576544-37576598)
chr4 (191-237)||(54208181-54208227)
chr4 (193-226)||(37030921-37030954)
[»] chr1 (11 HSPs)
chr1 (187-237)||(3792297-3792347)
chr1 (191-237)||(5602945-5602991)
chr1 (189-235)||(9862921-9862967)
chr1 (187-237)||(37260940-37260990)
chr1 (45-82)||(30311709-30311746)
chr1 (190-234)||(35392134-35392178)
chr1 (187-237)||(20447024-20447074)
chr1 (187-237)||(20532787-20532837)
chr1 (191-237)||(28476013-28476059)
chr1 (189-237)||(5119060-5119108)
chr1 (173-237)||(42883109-42883173)
[»] chr8 (2 HSPs)
chr8 (173-237)||(3588558-3588622)
chr8 (193-237)||(9418588-9418632)
[»] chr5 (2 HSPs)
chr5 (183-237)||(3758923-3758977)
chr5 (189-237)||(38739388-38739436)
[»] scaffold1763 (1 HSPs)
scaffold1763 (193-237)||(397-441)
[»] scaffold0246 (1 HSPs)
scaffold0246 (193-237)||(2886-2930)
[»] scaffold0041 (1 HSPs)
scaffold0041 (193-237)||(23488-23532)


Alignment Details
Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 250 - 358
Target Start/End: Complemental strand, 54734254 - 54734146
Alignment:
Q  250 tatcgtgtttctttgttagagtggtgatgttgattcgaccaaagaaaaaagagtggtaatgctacagaaaatgttgatattattcggtgtaaattacttt 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54734254 tatcgtgtttctttgttagagtggtgatgttgattcgaccaaagaaaaaagagtggtaatgctacagaaaatgttgatattattcggtgtaaattacttt 54734155  T
Q  350 caactcaca 358  Q
    |||||||||    
T  54734154 caactcaca 54734146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 54528983 - 54529033
Alignment:
Q  187 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  54528983 tggacatttacattgagaatgagcaaaatcattttggtaaagagcagaatt 54529033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 33148890 - 33148826
Alignment:
Q  173 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    ||||| |||||||||| |||||||||||| ||| |||||||| | ||||||||| ||||||||||    
T  33148890 acgcaaaggcaatatgtacatttactttgggaacgagcaaaaacgtttgggtaatgagcagaatt 33148826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 33450047 - 33450111
Alignment:
Q  173 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    |||||| | ||||||||||||||| |||||||||||||||||   ||||||||| ||||||||||    
T  33450047 acgcagggacaatatggacatttattttgagaatgagcaaaacagtttgggtaatgagcagaatt 33450111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 7546135 - 7546078
Alignment:
Q  180 ggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    |||||||||||||||||||||| ||| |||| |||   ||||||||||||||||||||    
T  7546135 ggcaatatggacatttactttgggaacgagcgaaacagtttgggtaaagagcagaatt 7546078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 21566981 - 21567026
Alignment:
Q  192 atttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    |||||| ||| ||||||| |||||||||||||||||||||||||||    
T  21566981 atttacattgggaatgagaaaaatcatttgggtaaagagcagaatt 21567026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 50663921 - 50663876
Alignment:
Q  192 atttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    |||||||||| |||||||| ||||||||||||| ||||||||||||    
T  50663921 atttactttgggaatgagcgaaatcatttgggtgaagagcagaatt 50663876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 52311860 - 52311919
Alignment:
Q  173 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagca 232  Q
    |||||| |||||||| ||||||||||||| ||| ||||||||  |||| |||||||||||    
T  52311860 acgcaggggcaatatagacatttactttgggaacgagcaaaacaattttggtaaagagca 52311919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 3540254 - 3540308
Alignment:
Q  181 gcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaa 235  Q
    ||||||||||||||||||||| ||| ||||||||   ||| ||||||||||||||    
T  3540254 gcaatatggacatttactttgggaacgagcaaaacagttttggtaaagagcagaa 3540308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 42947426 - 42947376
Alignment:
Q  187 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    ||||| |||||||||||||||||  ||||||||| ||||| ||||||||||    
T  42947426 tggacttttactttgagaatgagtgaaatcatttaggtaatgagcagaatt 42947376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 47064915 - 47064865
Alignment:
Q  187 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    ||||| ||||||||| ||||||||| |||||||||||||| ||||| ||||    
T  47064915 tggacttttactttgggaatgagcagaatcatttgggtaatgagcataatt 47064865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 42951008 - 42951065
Alignment:
Q  180 ggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    |||||||||||||||||||||| ||||||||  ||  ||||| |||| ||||||||||    
T  42951008 ggcaatatggacatttactttgggaatgagcggaagtatttgagtaatgagcagaatt 42951065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 13843626 - 13843670
Alignment:
Q  193 tttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    ||||||||| |||||||| ||| ||||||||||| ||||||||||    
T  13843626 tttactttgggaatgagcgaaaccatttgggtaatgagcagaatt 13843670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 44430463 - 44430419
Alignment:
Q  193 tttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    ||||||||| |||||||||||| ||||||| ||| ||||||||||    
T  44430463 tttactttgggaatgagcaaaaccatttggataatgagcagaatt 44430419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 28138806 - 28138760
Alignment:
Q  191 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  28138806 catttactttgggaatgagcaaaatcatttgggtaaagagcagaatt 28138760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 26009416 - 26009370
Alignment:
Q  191 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||    
T  26009416 catttactttgggaatgagcaaaatcgtttgggtaaagagcagaatt 26009370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 23345066 - 23345123
Alignment:
Q  180 ggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    ||||||||| ||||||| |||| |||||||||||||| ||||||||||||||| ||||    
T  23345066 ggcaatatgaacatttattttgggaatgagcaaaatcgtttgggtaaagagcataatt 23345123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 36325677 - 36325620
Alignment:
Q  180 ggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    |||||||||||||||||||||||||| ||||||||   |||| |||||||||||||||    
T  36325677 ggcaatatggacatttactttgagaacgagcaaaactgtttgagtaaagagcagaatt 36325620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 23344495 - 23344444
Alignment:
Q  183 aatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcaga 234  Q
    |||||||||||||||||| | ||||||||||| | |||||||||||||||||    
T  23344495 aatatggacatttactttaaaaatgagcaaaaccgtttgggtaaagagcaga 23344444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 26011984 - 26012030
Alignment:
Q  191 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    ||||||||||||||||||  |||||| ||||||||||||||||||||    
T  26011984 catttactttgagaatgattaaaatcgtttgggtaaagagcagaatt 26012030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 10526997 - 10527061
Alignment:
Q  173 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    ||||| ||||||| ||||||||||||||| ||||||   ||  ||||||||||||||||||||||    
T  10526997 acgcaaaggcaatttggacatttactttgggaatgattgaatccatttgggtaaagagcagaatt 10527061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 19931535 - 19931489
Alignment:
Q  191 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    ||||||||||||||| |||||||| ||||| | ||||||||||||||    
T  19931535 catttactttgagaacgagcaaaaccatttagataaagagcagaatt 19931489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 33839473 - 33839519
Alignment:
Q  191 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    |||||||||||||||||||| ||  ||||||| ||||||||||||||    
T  33839473 catttactttgagaatgagcgaatccatttggataaagagcagaatt 33839519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 41957597 - 41957643
Alignment:
Q  191 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  41957597 catttactttgggaatgatcaaaatcgtttgggtaaagagcaaaatt 41957643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 42548212 - 42548162
Alignment:
Q  187 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    ||||| ||||||||| ||||||||||||  |||||||||| ||||||||||    
T  42548212 tggacttttactttgggaatgagcaaaacgatttgggtaatgagcagaatt 42548162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 25428796 - 25428732
Alignment:
Q  173 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    |||||| |||| | |||| |||||||||| ||||||||| || | ||||||||||||||| ||||    
T  25428796 acgcaggggcattttggatatttactttgggaatgagcagaaccgtttgggtaaagagcaaaatt 25428732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 28139448 - 28139512
Alignment:
Q  173 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    |||||| |||| | ||| ||||||||||| ||||| |||||  |||||||||||| |||||||||    
T  28139448 acgcaggggcattttggtcatttactttgggaatgggcaaatccatttgggtaaaaagcagaatt 28139512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 31852700 - 31852636
Alignment:
Q  173 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    |||||| || |||||| ||||||||||||| || |||||||| | ||||| ||| ||||||||||    
T  31852700 acgcaggggtaatatgaacatttactttgaaaacgagcaaaaccgtttggataatgagcagaatt 31852636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 35827 - 35777
Alignment:
Q  187 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||||||||    
T  35827 tggacatttactttgagaatgagcaaaattgtttggttaaagagcagaatt 35777  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 14153401 - 14153355
Alignment:
Q  191 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  14153401 catttactttgggaatgagcaaaatcatttgggtaatgagcagaatt 14153355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 806594 - 806546
Alignment:
Q  189 gacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||||    
T  806594 gacatttactttgagaatgagcaaaactgtttgggtaaagagcagaatt 806546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 2559640 - 2559696
Alignment:
Q  181 gcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    |||||||| |||||||||||| ||| |||||||||| ||||||||||||||| ||||    
T  2559640 gcaatatgaacatttactttgggaacgagcaaaatcgtttgggtaaagagcaaaatt 2559696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 1826590 - 1826636
Alignment:
Q  191 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    |||||||||| | ||||||||||||||||||| ||||||||||||||    
T  1826590 catttactttaaaaatgagcaaaatcatttggataaagagcagaatt 1826636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 1826176 - 1826136
Alignment:
Q  173 acgcagaggcaatatggacatttactttgagaatgagcaaa 213  Q
    ||||| ||| |||||||||||||||||||||||||||||||    
T  1826176 acgcaaaggtaatatggacatttactttgagaatgagcaaa 1826136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 35060922 - 35060972
Alignment:
Q  187 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    |||||||||||||||  |||||||  |||||||||||||| ||||||||||    
T  35060922 tggacatttactttggaaatgagcggaatcatttgggtaatgagcagaatt 35060972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 6819611 - 6819668
Alignment:
Q  180 ggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    ||||||||||||||||| |||| ||| ||||||||   ||| ||||||||||||||||    
T  6819611 ggcaatatggacatttattttgggaacgagcaaaactgttttggtaaagagcagaatt 6819668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 17797025 - 17797087
Alignment:
Q  173 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaa 235  Q
    |||||| |||||||||||||||||||||| |||  ||||||||  ||||||||||||||||||    
T  17797025 acgcaggggcaatatggacatttactttgggaacaagcaaaattgtttgggtaaagagcagaa 17797087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 9539093 - 9539153
Alignment:
Q  175 gcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaa 235  Q
    |||| ||||||||| |||||||||||| |||||||||||||  ||| ||||||||||||||    
T  9539093 gcaggggcaatatgaacatttactttgggaatgagcaaaatagttttggtaaagagcagaa 9539153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 25389881 - 25389927
Alignment:
Q  191 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    |||||||||||||||||||||||  |||||| |||||||||||||||    
T  25389881 catttactttgagaatgagcaaatccatttgagtaaagagcagaatt 25389927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 237
Target Start/End: Original strand, 28360221 - 28360259
Alignment:
Q  199 ttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  28360221 ttgagaatgagcaaaaacatttgggtaaagagcagaatt 28360259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 31133228 - 31133180
Alignment:
Q  189 gacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    |||||||||||| | ||||||| |||| |||||||||||||||||||||    
T  31133228 gacatttactttaaaaatgagcgaaatgatttgggtaaagagcagaatt 31133180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 38147085 - 38147144
Alignment:
Q  173 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagca 232  Q
    ||||||||| |||||| |||||||||||  |||||||| ||  |||||||||||||||||    
T  38147085 acgcagaggtaatatgaacatttactttaggaatgagcgaatccatttgggtaaagagca 38147144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 12965096 - 12965050
Alignment:
Q  191 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    |||||||||||| |||||||| || | ||||||||||||||||||||    
T  12965096 catttactttgaaaatgagcagaaacgtttgggtaaagagcagaatt 12965050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 22788016 - 22788062
Alignment:
Q  191 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    ||||||||||| |||||| ||||  ||||||||||||||||||||||    
T  22788016 catttactttgggaatgaacaaatccatttgggtaaagagcagaatt 22788062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 20685051 - 20685007
Alignment:
Q  193 tttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    ||||||||||||||||||  || ||||||||||| ||||||||||    
T  20685051 tttactttgagaatgagcggaaccatttgggtaatgagcagaatt 20685007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 33164532 - 33164582
Alignment:
Q  187 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    ||||||||||||||||||||||||  || ||||||||||| ||||||||||    
T  33164532 tggacatttactttgagaatgagcggaaccatttgggtaatgagcagaatt 33164582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 38677694 - 38677739
Alignment:
Q  192 atttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    |||||||||| |||||| ||||||| ||||||||||||||||||||    
T  38677694 atttactttgggaatgaacaaaatcgtttgggtaaagagcagaatt 38677739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 28796671 - 28796621
Alignment:
Q  187 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    |||||||||||||||||||||||| | ||  ||||||||| ||||||||||    
T  28796671 tggacatttactttgagaatgagcgatattgtttgggtaatgagcagaatt 28796621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 36217921 - 36217871
Alignment:
Q  187 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    ||||| ||||||||| ||||||| |||| |||||| |||||||||||||||    
T  36217921 tggacttttactttgggaatgagtaaaaccatttgagtaaagagcagaatt 36217871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 37576598 - 37576544
Alignment:
Q  183 aatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    |||||||||||||||||||  || |||||||| | ||||||||| ||||||||||    
T  37576598 aatatggacatttactttggaaacgagcaaaaccgtttgggtaatgagcagaatt 37576544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 54208227 - 54208181
Alignment:
Q  191 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    ||||||||||| |||||||||||| ||||||| ||||||||| ||||    
T  54208227 catttactttgggaatgagcaaaaccatttggataaagagcataatt 54208181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 37030954 - 37030921
Alignment:
Q  193 tttactttgagaatgagcaaaatcatttgggtaa 226  Q
    ||||||||| ||||||||||||||||||||||||    
T  37030954 tttactttgggaatgagcaaaatcatttgggtaa 37030921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 3792347 - 3792297
Alignment:
Q  187 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    |||||||||| |||||||||||| | |||||||||||||| ||||||||||    
T  3792347 tggacatttattttgagaatgagtagaatcatttgggtaatgagcagaatt 3792297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 5602991 - 5602945
Alignment:
Q  191 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    ||||||||||| |||||||||||  ||||||||||||||||||||||    
T  5602991 catttactttgggaatgagcaaatccatttgggtaaagagcagaatt 5602945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 235
Target Start/End: Original strand, 9862921 - 9862967
Alignment:
Q  189 gacatttactttgagaatgagcaaaatcatttgggtaaagagcagaa 235  Q
    |||||||| |||| |||||||| ||||||||||||||||||||||||    
T  9862921 gacatttattttgggaatgagcgaaatcatttgggtaaagagcagaa 9862967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 37260940 - 37260990
Alignment:
Q  187 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    ||||||||||||||||||||| |||||| | ||||||||||||||| ||||    
T  37260940 tggacatttactttgagaatgggcaaaaccgtttgggtaaagagcataatt 37260990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 30311746 - 30311709
Alignment:
Q  45 gacatgaaatgagaacgaggaaagttgaattgagaaat 82  Q
    |||||||||||||||| |||||||||||||||||||||    
T  30311746 gacatgaaatgagaacaaggaaagttgaattgagaaat 30311709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 35392134 - 35392178
Alignment:
Q  190 acatttactttgagaatgagcaaaatcatttgggtaaagagcaga 234  Q
    |||||||||||| ||||||||||||  ||||||||||||||||||    
T  35392134 acatttactttgggaatgagcaaaacaatttgggtaaagagcaga 35392178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 20447074 - 20447024
Alignment:
Q  187 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    ||||||||||||||||||||||||||||   |||||||||| |||| ||||    
T  20447074 tggacatttactttgagaatgagcaaaacagtttgggtaaaaagcataatt 20447024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 20532837 - 20532787
Alignment:
Q  187 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    ||||||||||||||||||||||||||||   |||||||||| |||| ||||    
T  20532837 tggacatttactttgagaatgagcaaaacagtttgggtaaaaagcataatt 20532787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 28476013 - 28476059
Alignment:
Q  191 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    ||||||||||||||||||||  || ||||||||||| ||||||||||    
T  28476013 catttactttgagaatgagcggaaccatttgggtaatgagcagaatt 28476059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 5119060 - 5119108
Alignment:
Q  189 gacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    ||||||||||||  |||||||||||| | ||||| ||||||||||||||    
T  5119060 gacatttactttaggaatgagcaaaaccgtttggataaagagcagaatt 5119108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 42883173 - 42883109
Alignment:
Q  173 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    |||||| | ||||||| |||||||||||  | ||||||||||   ||||||||||||||||||||    
T  42883173 acgcagggacaatatgaacatttactttaggtatgagcaaaactgtttgggtaaagagcagaatt 42883109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 3588558 - 3588622
Alignment:
Q  173 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    |||||| |||| | ||| |||||| |||| ||||||||||| |||||||||||||||| ||||||    
T  3588558 acgcaggggcattttggtcatttaatttgggaatgagcaaattcatttgggtaaagagtagaatt 3588622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 9418632 - 9418588
Alignment:
Q  193 tttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    ||||||||| |||||||| ||| ||||||||||| ||||||||||    
T  9418632 tttactttgggaatgagcgaaaccatttgggtaatgagcagaatt 9418588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 3758977 - 3758923
Alignment:
Q  183 aatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    |||||| |||||||||||| ||||||| |||| | ||| ||||||||||||||||    
T  3758977 aatatgaacatttactttgggaatgagtaaaaccgttttggtaaagagcagaatt 3758923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 38739436 - 38739388
Alignment:
Q  189 gacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    |||||||||||||| ||||||| |||  |||||||||||||||| ||||    
T  38739436 gacatttactttgacaatgagcgaaacgatttgggtaaagagcataatt 38739388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1763 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 397 - 441
Alignment:
Q  193 tttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    ||||||||| |||||||| ||| ||||||||||||||||| ||||    
T  397 tttactttgggaatgagcgaaaccatttgggtaaagagcataatt 441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 2886 - 2930
Alignment:
Q  193 tttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    |||| ||||||||||||| ||| ||||||||||| ||||||||||    
T  2886 tttattttgagaatgagcgaaaccatttgggtaatgagcagaatt 2930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 23532 - 23488
Alignment:
Q  193 tttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 237  Q
    |||||||||||||||||||||| ||||||  ||| ||||||||||    
T  23532 tttactttgagaatgagcaaaaccatttgaataatgagcagaatt 23488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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