View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5460_high_4 (Length: 239)
Name: NF5460_high_4
Description: NF5460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5460_high_4 |
 | |
|
| [»] scaffold0083 (2 HSPs) |
| | |
|
| [»] scaffold0002 (3 HSPs) |
| | |
|
| [»] scaffold0603 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 36)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 10363108 - 10363331
Alignment:
| Q |
1 |
ccaactttttccccccttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10363108 |
ccaactttttccccccttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcctatcgagtgggcaatcctttggaaaaattga |
10363207 |
T |
|
| Q |
101 |
acaatatgcaaagcatcttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatgctgctg |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10363208 |
acaatatgcaaagcatcttttcaagtgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatgttgctg |
10363307 |
T |
|
| Q |
201 |
ttcaaaattgaagtccactctgtt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
10363308 |
ttcaaaattgaagtccactctgtt |
10363331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 10581369 - 10581158
Alignment:
| Q |
1 |
ccaactttttccccccttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattga |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10581369 |
ccaactttttccccccttgtgaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcctatcgagtgggcaatcctttggaaaaattga |
10581270 |
T |
|
| Q |
101 |
acaatatgcaaagcatcttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatgctgctg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10581269 |
acaatatgcaaagcatcttttcaaatgagagggaagatattgataactcaaatgcaatgcaggaagaatattatcatttcgcaagttccatatgctgctg |
10581170 |
T |
|
| Q |
201 |
ttcaaaattgaa |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
10581169 |
ttcaaaattgaa |
10581158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 10664279 - 10664062
Alignment:
| Q |
7 |
ttttccccccttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaata |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
10664279 |
ttttccccccttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcctatcaagtgggtaatcctttggaaaaattgaacaata |
10664180 |
T |
|
| Q |
107 |
tgcaaagcatcttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatgctgctgttcaaa |
206 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
10664179 |
tgcaaaacatctcttcaaatgagagggaagatattgataactcaaatgcaatgcaggaagaatattatcattgcgcaagttccatatgttgctgttcaaa |
10664080 |
T |
|
| Q |
207 |
attgaagtccactctgtt |
224 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
10664079 |
attgaagtccactctgtt |
10664062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 10127687 - 10127464
Alignment:
| Q |
1 |
ccaactttttccccccttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattga |
100 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
10127687 |
ccaactcttttcccccttgagaacaatcaaggaagccttctgccatccacaacaaaaccaatgtcttcttatcaagtgggaaatcctttggaaaaattga |
10127588 |
T |
|
| Q |
101 |
acaatatgcaaagcatcttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatgctgctg |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
10127587 |
acaatatgcaaaacatcttttcaaatgagagggaagatattgataactcaaatgcaatgcaggaagaatattatcatttcgcaagttccatatgttgttg |
10127488 |
T |
|
| Q |
201 |
ttcaaaattgaagtccactctgtt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
10127487 |
ttcaaaattgaagtccactctgtt |
10127464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 10433354 - 10433577
Alignment:
| Q |
1 |
ccaactttttccccccttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattga |
100 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10433354 |
ccaactcttttcccccttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcctatcgagtgggcaatcctttggaaaaattga |
10433453 |
T |
|
| Q |
101 |
acaatatgcaaagcatcttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatgctgctg |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| | ||||| |
|
|
| T |
10433454 |
acaatatgcaaagcatcttttcaaacgagagggaagatattgataactcaaatgcaatgcaggaagaatattatcatttgataagttccatacgttgctg |
10433553 |
T |
|
| Q |
201 |
ttcaaaattgaagtccactctgtt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
10433554 |
ttcaaaattgaagtccactctgtt |
10433577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 5 - 220
Target Start/End: Complemental strand, 9839616 - 9839401
Alignment:
| Q |
5 |
ctttttccccccttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaa |
104 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9839616 |
ctttttcccccgttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattccttcctatcgagtgggcaatcctttggaaaaattgaacaa |
9839517 |
T |
|
| Q |
105 |
tatgcaaagcatcttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatgctgctgttca |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
9839516 |
tatgcaaagcatcttttcaaatgagagggaagatattgataactcaaatgcaatgcaggaagaatattatcatttgataagttccatatgtcgctgttca |
9839417 |
T |
|
| Q |
205 |
aaattgaagtccactc |
220 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
9839416 |
aaattgaagtccactc |
9839401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 5 - 220
Target Start/End: Complemental strand, 9850494 - 9850279
Alignment:
| Q |
5 |
ctttttccccccttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaa |
104 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9850494 |
ctttttcccccgttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcctatcgagtgggcaatcctttggaaaaattgaacaa |
9850395 |
T |
|
| Q |
105 |
tatgcaaagcatcttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatgctgctgttca |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
9850394 |
tatgcaaagcatcttttcaaatgagagggaagatattgataactcaaatgcaatgcaggaagaatattatcatttgataagttccatatgtcactgttca |
9850295 |
T |
|
| Q |
205 |
aaattgaagtccactc |
220 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
9850294 |
aaattgaagtccactc |
9850279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 7 - 220
Target Start/End: Complemental strand, 10672435 - 10672222
Alignment:
| Q |
7 |
ttttccccccttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaata |
106 |
Q |
| |
|
|||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
10672435 |
tttttccctcttgagaacaatcgaggaagccttctgccatccacaacaaaaccaatgtcttcttatcaagtgggaaatcctttggaaaaattgaacaata |
10672336 |
T |
|
| Q |
107 |
tgcaaagcatcttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatgctgctgttcaaa |
206 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
10672335 |
tgcaaaacatcttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagtttcatatgttgctgttcaaa |
10672236 |
T |
|
| Q |
207 |
attgaagtccactc |
220 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10672235 |
attgaagtccactc |
10672222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 10089538 - 10089326
Alignment:
| Q |
12 |
cccccttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaatatgcaa |
111 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10089538 |
cccccatgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcctatcaagtgggtaatcctttggaaaaattgaacaatatgcaa |
10089439 |
T |
|
| Q |
112 |
agcatcttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatgctgctgttcaaaattga |
211 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
10089438 |
aacatcttttcaaatgacagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttgataagttccatatgtcgctgttcaaaattga |
10089339 |
T |
|
| Q |
212 |
agtccactctgtt |
224 |
Q |
| |
|
||||||||||||| |
|
|
| T |
10089338 |
agtccactctgtt |
10089326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 10196421 - 10196209
Alignment:
| Q |
12 |
cccccttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaatatgcaa |
111 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10196421 |
cccccatgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcctatcaagtgggtaatcctttggaaaaattgaacaatatgcaa |
10196322 |
T |
|
| Q |
112 |
agcatcttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatgctgctgttcaaaattga |
211 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
10196321 |
aacatcttttcaaatgacagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttgataagttccatatgtcgctgttcaaaattga |
10196222 |
T |
|
| Q |
212 |
agtccactctgtt |
224 |
Q |
| |
|
||||||||||||| |
|
|
| T |
10196221 |
agtccactctgtt |
10196209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 10528111 - 10527894
Alignment:
| Q |
7 |
ttttccccccttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaata |
106 |
Q |
| |
|
|||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
10528111 |
tttttccctcttgagaacaatcgaggaagccttctgccatccacaacaaaaccaatgtcttcttatcaagtgggaaatcctttggaaaaattgaacaata |
10528012 |
T |
|
| Q |
107 |
tgcaaagcatcttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatgctgctgttcaaa |
206 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||| |
|
|
| T |
10528011 |
tgcaaaacatcttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttgataagttccatacgttgctgttcaaa |
10527912 |
T |
|
| Q |
207 |
attgaagtccactctgtt |
224 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
10527911 |
attgaagtccactctgtt |
10527894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 10261457 - 10261234
Alignment:
| Q |
1 |
ccaactttttccccccttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattga |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||| | || ||||| ||||||||||||||||||| |
|
|
| T |
10261457 |
ccaacttttttcccccttgagaacaatcaaggaagccttctgccatccacagcaaaaccaatgtcttcctttcaagtggataatcctttggaaaaattga |
10261358 |
T |
|
| Q |
101 |
acaatatgcaaagcatcttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatgctgctg |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
10261357 |
acaatatgcaaaacatcttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttgataagttccatatgtcgctg |
10261258 |
T |
|
| Q |
201 |
ttcaaaattgaagtccactctgtt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
10261257 |
ttcaaaattgaagtccactctgtt |
10261234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 10032762 - 10032539
Alignment:
| Q |
1 |
ccaactttttccccccttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattga |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||| | || ||||| ||||||||||||||||||| |
|
|
| T |
10032762 |
ccaacttttttcccccttgagaacaatcaaggaagccttctgccatccacagcaaaaccaatgtcttcctttcaagtggataatcctttggaaaaattga |
10032663 |
T |
|
| Q |
101 |
acaatatgcaaagcatcttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatgctgctg |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
10032662 |
acaatatgcaaaacatcttttcaaatgagagggaagatattgataactcaaatgcaatgcaggaagaatattatcatttgataagttccatatgtcgctg |
10032563 |
T |
|
| Q |
201 |
ttcaaaattgaagtccactctgtt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
10032562 |
ttcaaaattgaagtccactctgtt |
10032539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 12 - 224
Target Start/End: Original strand, 10375166 - 10375378
Alignment:
| Q |
12 |
cccccttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaatatgcaa |
111 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10375166 |
cccccttgagaacaatcaagaaagccttctgccatccacaacaaaaccaattgcttcctatcaagtgggcaatccttgggaaaaattgaacaatatgcaa |
10375265 |
T |
|
| Q |
112 |
agcatcttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatgctgctgttcaaaattga |
211 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| | |||||||||| ||||||||||||| || |
|
|
| T |
10375266 |
aacatcttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatgtaatcattaggtaagttccatacattgctgttcaaaatgga |
10375365 |
T |
|
| Q |
212 |
agtccactctgtt |
224 |
Q |
| |
|
|||||||||||| |
|
|
| T |
10375366 |
tgtccactctgtt |
10375378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 11769993 - 11769770
Alignment:
| Q |
1 |
ccaactttttccccccttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattga |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||| |||| |||| |||||| | ||||||||||||||||| |
|
|
| T |
11769993 |
ccaactttttcccaccttgagaacaatcaaggaatccttctgccatccacaacaaaatcaatttcttcctatcaagtgggtagtcctttggaaaaattga |
11769894 |
T |
|
| Q |
101 |
acaatatgcaaagcatcttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatgctgctg |
200 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
11769893 |
acaatatgcaaaacatcttttcaagtgagatggaagatattgataacttaaatgcaaagcaggaagaatattatcatttgataagttccatatgtcattg |
11769794 |
T |
|
| Q |
201 |
ttcaaaattgaagtccactctgtt |
224 |
Q |
| |
|
|| ||||||| ||||||||||||| |
|
|
| T |
11769793 |
tttaaaattgcagtccactctgtt |
11769770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 10518229 - 10518025
Alignment:
| Q |
16 |
cttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaatatgcaaagca |
115 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||| ||| | || |||||| |||||||||||||||| |||||||| || || || |
|
|
| T |
10518229 |
cttgagaataatcaaggaaaccttctgccatccacaacaaaaccaattttttcctctcaagtgggtaatcctttggaaaaatagaacaataggcgaaaca |
10518130 |
T |
|
| Q |
116 |
tcttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatgctgctgttcaaaattgaagtc |
215 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| | ||| ||||||||||| |||||||||||| ||||||| | |||||||| | |
|
|
| T |
10518129 |
tcttttcaaatgagaaggaagatattgataactcaaatgcaaagcaggcaaaattttatcatttcgtaagttccatatgttgctgtttagaattgaagac |
10518030 |
T |
|
| Q |
216 |
cactc |
220 |
Q |
| |
|
||||| |
|
|
| T |
10518029 |
cactc |
10518025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 11781306 - 11781511
Alignment:
| Q |
15 |
ccttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaatatgcaaagc |
114 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||||||| || ||| | || |||||| |||||||||||||||| |||||||| || || | |
|
|
| T |
11781306 |
ccttgagaataatcaaggaggccttctgccatccacaacaaaaccagttttttcctctcaagtgggtaatcctttggaaaaatagaacaataggcgaaac |
11781405 |
T |
|
| Q |
115 |
atcttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatgctgctgttcaaaattgaagt |
214 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| | || ||||||||||| ||||||||||| ||||||| | ||||||||| |
|
|
| T |
11781406 |
atcttttcaaatgagaaggaagatattgataactcaaatgcaaagcaggcaaaactttatcatttcgtaagttccatatattgctgttgagaattgaagt |
11781505 |
T |
|
| Q |
215 |
ccactc |
220 |
Q |
| |
|
|||||| |
|
|
| T |
11781506 |
ccactc |
11781511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 10501319 - 10501113
Alignment:
| Q |
15 |
ccttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaatatgcaaagc |
114 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||| |||||| |||| ||||| ||||| |||||||| ||||||| |
|
|
| T |
10501319 |
ccttgagaataatcaaggaagccttctgccatccacaacaaaaccaatttcttcctatccagtgggtaatcttttgggaaaatagaacaataggcaaagc |
10501220 |
T |
|
| Q |
115 |
atcttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatgctgctgttcaaaattgaagt |
214 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||||| || | ||| ||||||||| |||||||||||| ||| |||| ||||| ||| |
|
|
| T |
10501219 |
atctttttaaatgagagggaagatattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatgtcgctattcagaattgcagt |
10501120 |
T |
|
| Q |
215 |
ccactct |
221 |
Q |
| |
|
||||||| |
|
|
| T |
10501119 |
ccactct |
10501113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 10078022 - 10077808
Alignment:
| Q |
7 |
ttttccccccttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaata |
106 |
Q |
| |
|
||||| |||| || ||| ||||||| ||||||||||||||||||| ||||||||||| |||| | || |||| | | |||||||||||||||||||||| |
|
|
| T |
10078022 |
ttttctccccatgtgaataatcaagaaagccttctgccatccacagcaaaaccaatttcttcctgtcaagtgtgtgaccctttggaaaaattgaacaata |
10077923 |
T |
|
| Q |
107 |
tgcaaagcatcttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatgctgctgttcaaa |
206 |
Q |
| |
|
|||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| | |||||||||| | || |||||| |
|
|
| T |
10077922 |
tgcaaaacatattttcaaatgagagggaagacattgataactcaaatgcaaagcaggaagaattttatcatttggtaagttccatacattactattcaaa |
10077823 |
T |
|
| Q |
207 |
attgaagtccactct |
221 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
10077822 |
attgttgtccactct |
10077808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 10184995 - 10184781
Alignment:
| Q |
7 |
ttttccccccttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaata |
106 |
Q |
| |
|
||||| |||| || ||| ||||||| ||||||||||||||||||| ||||||||||| |||| | || ||| | | ||||||||||||| |||||||| |
|
|
| T |
10184995 |
ttttctccccatgtgaataatcaagaaagccttctgccatccacagcaaaaccaatttcttcctgtcatgtgtgtgaccctttggaaaaatagaacaata |
10184896 |
T |
|
| Q |
107 |
tgcaaagcatcttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatgctgctgttcaaa |
206 |
Q |
| |
|
|||||| ||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||| | |||||||||| |||| |||||| |
|
|
| T |
10184895 |
tgcaaaacatattttcaaatgagagggaagacattgataactcaaatgcaaagtaggaagaattttatcatttggtaagttccatacattgctattcaaa |
10184796 |
T |
|
| Q |
207 |
attgaagtccactct |
221 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
10184795 |
attgttgtccactct |
10184781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 11159344 - 11159547
Alignment:
| Q |
18 |
tgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaatatgcaaagcatc |
117 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||| | |||||||||||||| |||||||||| ||| |||| |
|
|
| T |
11159344 |
tgagaataatcaaggaagccttctgccatccacaacaaaaccaattgcttcctatcaagtgtatagtcctttggaaaaatggaacaatatgaaaaacatc |
11159443 |
T |
|
| Q |
118 |
ttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatgctgctgttcaaaattgaagtcca |
217 |
Q |
| |
|
||||||| || |||||||||||||||||||||| | |||| ||||| | || ||| |||||| | ||||||||||| || ||||||||| | |||||| |
|
|
| T |
11159444 |
ttttcaattgggagggaagatattgataactcagaagcaatgcaggtaaaacattgtcatttggtaagttccatattttgttgttcaaaacttcagtcca |
11159543 |
T |
|
| Q |
218 |
ctct |
221 |
Q |
| |
|
|||| |
|
|
| T |
11159544 |
ctct |
11159547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 7 - 126
Target Start/End: Original strand, 13853996 - 13854115
Alignment:
| Q |
7 |
ttttccccccttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaata |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| | ||||||||||||||||||||||| |
|
|
| T |
13853996 |
tttttcccccttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcctatcaagtgggtagtcctttggaaaaattgaacaata |
13854095 |
T |
|
| Q |
107 |
tgcaaagcatcttttcaaat |
126 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
13854096 |
tgcaaaacatcttttcaaat |
13854115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 30 - 194
Target Start/End: Complemental strand, 13171761 - 13171597
Alignment:
| Q |
30 |
aggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaatatgcaaagcatcttttcaaatgag |
129 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| |||||| || ||||| ||||||| ||||||||||| ||||| ||||| |||||||||||||| | |
|
|
| T |
13171761 |
aggaagccttctgccatccataacaaaatcaattccttcttgtccagtggaaaatccttcggaaaaattgagcaataggcaaaacatcttttcaaatgtg |
13171662 |
T |
|
| Q |
130 |
agggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatg |
194 |
Q |
| |
|
||||||||||||||||||| | | |||||||||| | ||||||||||||| | |||||||||||| |
|
|
| T |
13171661 |
agggaagatattgataacttagacgcaaagcaggtaaaatattatcatttggtaagttccatatg |
13171597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 30 - 194
Target Start/End: Complemental strand, 13344819 - 13344655
Alignment:
| Q |
30 |
aggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaatatgcaaagcatcttttcaaatgag |
129 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| |||||| || ||||| ||||||||||||||||||| ||||| ||||| |||||||||||||| | |
|
|
| T |
13344819 |
aggaagccttctgccatccataacaaaatcaattccttcttgtccagtggaaaatcctttggaaaaattgagcaataggcaaaacatcttttcaaatgtg |
13344720 |
T |
|
| Q |
130 |
agggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatg |
194 |
Q |
| |
|
||||||||||||||||||| | | | |||||||| | ||||||||||||| | |||||||||||| |
|
|
| T |
13344719 |
agggaagatattgataacttagacgtaaagcaggtaaaatattatcatttggtaagttccatatg |
13344655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 13161723 - 13161546
Alignment:
| Q |
17 |
ttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaatatgcaaagcat |
116 |
Q |
| |
|
|||||||| || |||||||||||||||||||| ||||||| ||||| |||||| || ||||| ||||||| ||||||||||| ||||| ||||| ||| |
|
|
| T |
13161723 |
ttgagaacgctctaggaagccttctgccatccataacaaaatcaattccttcttgtcaagtggaaaatccttcggaaaaattgagcaataggcaaaacat |
13161624 |
T |
|
| Q |
117 |
cttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatg |
194 |
Q |
| |
|
||||||||||| |||||||||||||||||||| | | |||||||||| | ||||| ||||||| | |||||||||||| |
|
|
| T |
13161623 |
cttttcaaatgtgagggaagatattgataacttagacgcaaagcaggtaaaatatgatcatttggtaagttccatatg |
13161546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 30 - 194
Target Start/End: Complemental strand, 13290395 - 13290231
Alignment:
| Q |
30 |
aggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaatatgcaaagcatcttttcaaatgag |
129 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| |||||| || |||| ||||||| ||||||||||| ||||| ||||| |||||||||||||| | |
|
|
| T |
13290395 |
aggaagccttctgccatccataacaaaatcaattccttcttgtcaagtgaaaaatccttcggaaaaattgagcaataggcaaaacatcttttcaaatgtg |
13290296 |
T |
|
| Q |
130 |
agggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatg |
194 |
Q |
| |
|
||||||||||||||||||| | | |||||||||| | ||||||||||||| | |||||||||||| |
|
|
| T |
13290295 |
agggaagatattgataacttagacgcaaagcaggtaaaatattatcatttggtaagttccatatg |
13290231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 26 - 221
Target Start/End: Complemental strand, 8862020 - 8861825
Alignment:
| Q |
26 |
atcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaatatgcaaagcatcttttcaaa |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| ||| |||| | |||||||||||||| |||||||||| ||| ||||||||||| |
|
|
| T |
8862020 |
atcaaggaagccttctgccatccacaacaataccaattgcttcctattaagtgaatagtcctttggaaaaatggaacaatatgaaaaacatcttttcaat |
8861921 |
T |
|
| Q |
126 |
tgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactct |
221 |
Q |
| |
|
|| |||||||||||||||||||||| | |||| ||||| | || ||| |||||| | ||||||||||| || ||||||||| | |||||||||| |
|
|
| T |
8861920 |
tgggagggaagatattgataactcagaagcaatgcaggtaaaacattgtcatttggtaagttccatattttgttgttcaaaacttcagtccactct |
8861825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 30 - 194
Target Start/End: Complemental strand, 13333634 - 13333470
Alignment:
| Q |
30 |
aggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaatatgcaaagcatcttttcaaatgag |
129 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| |||||| || ||||| ||||||| ||||||||||| ||||| ||||| |||||||||||||| | |
|
|
| T |
13333634 |
aggaagccttctgccatccataacaaaatcaattccttcttgtcaagtggaaaatccttcggaaaaattgagcaataggcaaaacatcttttcaaatgtg |
13333535 |
T |
|
| Q |
130 |
agggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatg |
194 |
Q |
| |
|
||||||||||||||||||| | | |||||||||| | ||| |||||||| | |||||||||||| |
|
|
| T |
13333534 |
agggaagatattgataacttagacgcaaagcaggtaaaattgtatcatttggtaagttccatatg |
13333470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 10890050 - 10889859
Alignment:
| Q |
16 |
cttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaatatgcaaagca |
115 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||||||| |||| |||| |||| | |||||||||||||| ||||| |||| ||| || |
|
|
| T |
10890050 |
cttgagaatgatcaatgaagccttctgccatccacaacaaaaccaatttcttcctatcaagtgtatagtcctttggaaaaatggaacagtatgaaaaaca |
10889951 |
T |
|
| Q |
116 |
tcttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatgctgctgttcaaaa |
207 |
Q |
| |
|
||||||||| || |||||||||||||||||||||| | |||| ||||| | || ||| |||||| | ||||||||||| || ||||||||| |
|
|
| T |
10889950 |
tcttttcaattgggagggaagatattgataactcagaagcaatgcaggtaaaacattgtcatttggtaagttccatattttgttgttcaaaa |
10889859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 26 - 193
Target Start/End: Original strand, 11130361 - 11130528
Alignment:
| Q |
26 |
atcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaatatgcaaagcatcttttcaaa |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| |||| | |||||||||||||| |||||||||| ||| ||||||||||| |
|
|
| T |
11130361 |
atcaaggaagccttctgccatccacaacaaaaccaattgcttcctataaagtgtatagtcctttggaaaaatggaacaatatgaaaaacatcttttcaat |
11130460 |
T |
|
| Q |
126 |
tgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatat |
193 |
Q |
| |
|
|| |||||||||||||||||||||| | |||| ||||| | | ||| |||||| | ||||||||||| |
|
|
| T |
11130461 |
tgggagggaagatattgataactcagaagcaatgcaggtaacacattgtcatttggtaagttccatat |
11130528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 11245946 - 11246093
Alignment:
| Q |
16 |
cttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaatatgcaaagca |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||| | ||||| |||||||| |||||||| ||||| || |
|
|
| T |
11245946 |
cttgagaatgatcaaggaagccttctgccatccacaacaaaaccaattgcttcctatcaagtggatagtccttcggaaaaatcgaacaataggcaaaaca |
11246045 |
T |
|
| Q |
116 |
tcttttcaaatgagagggaagatattgataactcaaatgcaaagcagg |
163 |
Q |
| |
|
||||||||| ||||||| |||||||||||| |||| | |||| ||||| |
|
|
| T |
11246046 |
tcttttcaattgagaggaaagatattgatagctcagaagcaatgcagg |
11246093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 221
Target Start/End: Original strand, 11148189 - 11148384
Alignment:
| Q |
26 |
atcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaatatgcaaagcatcttttcaaa |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||| ||| |||| | |||||||||||||| |||||||||| ||| ||||||||||| |
|
|
| T |
11148189 |
atcaaggaagccttctgccatccacaacaataccaattgattcctattaagtgaatagtcctttggaaaaatggaacaatatgaaaaacatcttttcaat |
11148288 |
T |
|
| Q |
126 |
tgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactct |
221 |
Q |
| |
|
|| |||||||||||||||||||||| | |||| ||||| | | ||| |||||| | ||||||||||| || ||||||||| | |||||||||| |
|
|
| T |
11148289 |
tgggagggaagatattgataactcagaagcaatgcaggtaacacattgtcatttggtaagttccatattttgttgttcaaaacttcagtccactct |
11148384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 194
Target Start/End: Complemental strand, 13396219 - 13396055
Alignment:
| Q |
30 |
aggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaatatgcaaagcatcttttcaaatgag |
129 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||| ||| | || | ||||||||||||| || ||||| ||||| |||||||||||||| | |
|
|
| T |
13396219 |
aggaagccttctgccatccacaacaaaatcaatttcttcctattaaagggatagccctttggaaaaatcgagcaataggcaaaacatcttttcaaatggg |
13396120 |
T |
|
| Q |
130 |
agggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatg |
194 |
Q |
| |
|
| ||||||| |||||| ||| | ||||| ||| | ||||||||||||| | | |||||||||| |
|
|
| T |
13396119 |
aaggaagatgttgatatgtcagaaacaaagaaggcataatattatcatttggtatgttccatatg |
13396055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 142
Target Start/End: Original strand, 11153418 - 11153524
Alignment:
| Q |
36 |
ccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaatatgcaaagcatcttttcaaatgagagggaa |
135 |
Q |
| |
|
||||| |||||||||||||||||||| |||||| |||| ||| | ||||| |||||||||| |||||| | ||| | |||||||||||||||||| |
|
|
| T |
11153418 |
ccttcagccatccacaacaaaaccaactgcttcctatcaagttcatagtccttcggaaaaattggacaataagaaaaatacattttcaaatgagagggaa |
11153517 |
T |
|
| Q |
136 |
gatattg |
142 |
Q |
| |
|
||||||| |
|
|
| T |
11153518 |
gatattg |
11153524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 115
Target Start/End: Complemental strand, 2919972 - 2919941
Alignment:
| Q |
84 |
tcctttggaaaaattgaacaatatgcaaagca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
2919972 |
tcctttggaaaaattgaacaatatgcaaagca |
2919941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 3913130 - 3913195
Alignment:
| Q |
86 |
ctttggaaaaattgaacaatatgcaaagcatcttttcaaatgagagggaagatattgataactcaa |
151 |
Q |
| |
|
||||||||||||||||||||| ||||| |||| |||||| ||| |||||||| ||||| ||||| |
|
|
| T |
3913130 |
ctttggaaaaattgaacaataagcaaaacatcgcttcaaaggagcaggaagatagtgatagctcaa |
3913195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 57721 - 57932
Alignment:
| Q |
1 |
ccaactttttccccccttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
57721 |
ccaactttttccccccttgagaacaatcaaggaaaccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattga |
57820 |
T |
|
| Q |
101 |
acaatatgcaaagcatcttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatgctgctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
57821 |
acaatatgcaaagcatcttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatgctgctg |
57920 |
T |
|
| Q |
201 |
ttcaaaattgaa |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
57921 |
ttcaaaattgaa |
57932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 56912 - 57035
Alignment:
| Q |
1 |
ccaactttttccccccttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56912 |
ccaactttttccccccttgagaacaatcaaggaaaccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattga |
57011 |
T |
|
| Q |
101 |
acaatatgcaaagcatcttttcaa |
124 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
57012 |
acaatatgcaaagcatcttttcaa |
57035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 26907654 - 26907433
Alignment:
| Q |
3 |
aactttttccccccttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaac |
102 |
Q |
| |
|
|||| ||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||| ||||| ||||||||||||||| ||||| |
|
|
| T |
26907654 |
aactcttttcccccttgagaacagtcaaggaagccttctgccatccacaacaagaccaattgctttctatcaagtggataatcctttggaaaaagtgaac |
26907555 |
T |
|
| Q |
103 |
aatatgcaaagcatcttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatgctgctgtt |
202 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||| | | |||| |
|
|
| T |
26907554 |
aatatgcaaaacatcttttcaaatgagagggaaggtattgataactcaaatgcaaagctggaagaatattatcatttcgtaagttccatacgtcgttgtt |
26907455 |
T |
|
| Q |
203 |
caaaattgaagtccactctgtt |
224 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
26907454 |
caaaattgaagtccactctgtt |
26907433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 25 - 220
Target Start/End: Complemental strand, 11485773 - 11485578
Alignment:
| Q |
25 |
aatcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaatatgcaaagcatcttttcaa |
124 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||| |||| |||||| ||||||||||||||||||| ||||| || || |||||||| || |
|
|
| T |
11485773 |
aatccaggaagccttctgccatccacaacaaaaccaatttcttcctatcaagtgggtaatcctttggaaaaattgagcaataggcgaaacatctttttaa |
11485674 |
T |
|
| Q |
125 |
atgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactc |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || || || |||||||| |||||||||||| ||| | || ||||| ||||||||| |
|
|
| T |
11485673 |
atgagagggaagatattgataactcaaatgcaaagctggcaggattgtatcattttttaagttccatatgtcgctatgcagaattgtagtccactc |
11485578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 44957013 - 44957218
Alignment:
| Q |
15 |
ccttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaatatgcaaagc |
114 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||||| || |||||| | || || || ||||||||||||| |||||||| || || | |
|
|
| T |
44957013 |
ccttgagaaatatcaaggaagccttctgccatccataacaaaaccatttttttcttagcaagcaggtaaccctttggaaaaatagaacaataggcgaaac |
44957112 |
T |
|
| Q |
115 |
atcttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatgctgctgttcaaaattgaagt |
214 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| | ||| |||||||||| ||||||||||| ||| |||| ||||||||| |
|
|
| T |
44957113 |
atcttttcaaatgagaaggaagatattgataactcaaatgcaaagcaggcaaaattgtatcatttcgttagttccatatgtcgctattcagaattgaagt |
44957212 |
T |
|
| Q |
215 |
ccactc |
220 |
Q |
| |
|
|||||| |
|
|
| T |
44957213 |
ccactc |
44957218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 12 - 220
Target Start/End: Original strand, 17852244 - 17852452
Alignment:
| Q |
12 |
cccccttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaatatgcaa |
111 |
Q |
| |
|
|||||||||||| | || ||||| |||||||||||||||||||||||||||| |||| |||| | || | ||||||||| ||||||||||||||||||| |
|
|
| T |
17852244 |
cccccttgagaatagtcgaggaatccttctgccatccacaacaaaaccaatttcttcctatcaaatgagtaatcctttgagaaaattgaacaatatgcaa |
17852343 |
T |
|
| Q |
112 |
agcatcttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatgctgctgttcaaaattga |
211 |
Q |
| |
|
| ||| ||||||||||||| ||||||||||||||||||||||||||||| || ||||| ||||||||| | || | |||||| ||| |||| ||||| |
|
|
| T |
17852344 |
aacatattttcaaatgagacggaagatattgataactcaaatgcaaagccgggagaattttatcattttgtaattgccatatatcgctattcagaattgc |
17852443 |
T |
|
| Q |
212 |
agtccactc |
220 |
Q |
| |
|
||||||||| |
|
|
| T |
17852444 |
agtccactc |
17852452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 115
Target Start/End: Complemental strand, 5988970 - 5988939
Alignment:
| Q |
84 |
tcctttggaaaaattgaacaatatgcaaagca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
5988970 |
tcctttggaaaaattgaacaatatgcaaagca |
5988939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 30 - 194
Target Start/End: Original strand, 135227 - 135391
Alignment:
| Q |
30 |
aggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaatatgcaaagcatcttttcaaatgag |
129 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| |||||| || ||||| ||||||| ||||||||||| ||||| ||||| |||||||||||||| | |
|
|
| T |
135227 |
aggaagccttctgccatccataacaaaatcaattccttcttgtccagtggaaaatccttcggaaaaattgagcaataggcaaaacatcttttcaaatgtg |
135326 |
T |
|
| Q |
130 |
agggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatg |
194 |
Q |
| |
|
||||||||||||||||||| | | |||||||||| | ||||||||||||| | |||||||||||| |
|
|
| T |
135327 |
agggaagatattgataacttagacgcaaagcaggtaaaatattatcatttggtaagttccatatg |
135391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 153570 - 153747
Alignment:
| Q |
17 |
ttgagaacaatcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaatatgcaaagcat |
116 |
Q |
| |
|
|||||||| || |||||||||||||||||||| ||||||| ||||| |||||| || ||||| ||||||| ||||||||||| ||||| ||||| ||| |
|
|
| T |
153570 |
ttgagaacgctctaggaagccttctgccatccataacaaaatcaattccttcttgtcaagtggaaaatccttcggaaaaattgagcaataggcaaaacat |
153669 |
T |
|
| Q |
117 |
cttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatg |
194 |
Q |
| |
|
||||||||||| |||||||||||||||||||| | | |||||||||| | ||| |||||||| | |||||||||||| |
|
|
| T |
153670 |
cttttcaaatgtgagggaagatattgataacttagacgcaaagcaggtaaaattgtatcatttggtaagttccatatg |
153747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 30 - 194
Target Start/End: Original strand, 145278 - 145442
Alignment:
| Q |
30 |
aggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaatatgcaaagcatcttttcaaatgag |
129 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| |||||| || ||||| ||||||| ||||||||||| ||||| ||||| |||||||||||||| | |
|
|
| T |
145278 |
aggaagccttctgccatccataacaaaatcaattccttcttgtcaagtggaaaatccttcggaaaaattgagcaataggcaaaacatcttttcaaatgtg |
145377 |
T |
|
| Q |
130 |
agggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatg |
194 |
Q |
| |
|
||||||||||||||||||| | | |||||||||| | ||| |||||||| | |||||||||||| |
|
|
| T |
145378 |
agggaagatattgataacttagacgcaaagcaggtaaaattgtatcatttggtaagttccatatg |
145442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 27 - 194
Target Start/End: Original strand, 31679069 - 31679236
Alignment:
| Q |
27 |
tcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaatatgcaaagcatcttttcaaat |
126 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||| ||||||| |||| || || |||||||||| |||||||||||||| || || ||| ||||||||| |
|
|
| T |
31679069 |
tcaaggaagccttcagccatccacagcaaaaccatttgcttcctatcaagaggataatcctttgggaaaattgaacaataagcgaaacatgttttcaaat |
31679168 |
T |
|
| Q |
127 |
gagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatg |
194 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| ||||| |||| |||||||||| | || ||||||||| |
|
|
| T |
31679169 |
gagaaggaagatattgataactcaaaagcaaggcagggagaacattatcatttggaaaattccatatg |
31679236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 27 - 205
Target Start/End: Complemental strand, 826635 - 826457
Alignment:
| Q |
27 |
tcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaatatgcaaagcatcttttcaaat |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| || || || || || |||| ||||||||||| ||||| | || ||||||||||||| |
|
|
| T |
826635 |
tcaaggaagccttctgccatccacaacaaaaccaaatgctttttttcaaggggataacccttgggaaaaattgagcaatagacgaaacatcttttcaaat |
826536 |
T |
|
| Q |
127 |
gagagggaagatattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatgctgctgttcaa |
205 |
Q |
| |
|
|||||||||| ||| ||||||||||| |||||||||| ||||| |||| |||| | | |||||||||| |||||||||| |
|
|
| T |
826535 |
gagagggaaggtatagataactcaaaagcaaagcaggcagaatgttattatttggtatgttccatatgttgctgttcaa |
826457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 27 - 163
Target Start/End: Complemental strand, 29837373 - 29837237
Alignment:
| Q |
27 |
tcaaggaagccttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaatatgcaaagcatcttttcaaat |
126 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||| |||| ||| | ||||||||||||||||||||||||| || || ||||||||||| | |
|
|
| T |
29837373 |
tcaatgaatccttctgccatccacaacaaaaccaattgcttcctatcaagttgataatcctttggaaaaattgaacaataggcgaaacatcttttcaagt |
29837274 |
T |
|
| Q |
127 |
gagagggaagatattgataactcaaatgcaaagcagg |
163 |
Q |
| |
|
|| | ||||||| |||||||||||||||||| ||||| |
|
|
| T |
29837273 |
gacaaggaagatcttgataactcaaatgcaatgcagg |
29837237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0603 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0603
Description:
Target: scaffold0603; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 4488 - 4544
Alignment:
| Q |
86 |
ctttggaaaaattgaacaatatgcaaagcatcttttcaaatgagagggaagatattg |
142 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||| ||| ||| ||||||||||| |
|
|
| T |
4488 |
ctttggaaaaattgaacaatactcaaagcatcgttttaaaggagttggaagatattg |
4544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University