View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5460_high_5 (Length: 239)
Name: NF5460_high_5
Description: NF5460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5460_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 34710318 - 34710498
Alignment:
| Q |
1 |
agaaagtgcacgttacaatgtgtatgcatgcaaagcatgcaacaaaacattcacttcatctcaagcacttggaggccatagaaaaggttgtcacaaaaag |
100 |
Q |
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| T |
34710318 |
agaaagtgcacgttacaatgtgtatgcatgcaaaacatgcaacaaaacattcacttcatctcaagcacttggaggccatagaaaaggttgtcagaaaaag |
34710417 |
T |
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| Q |
101 |
cctagagatggattcaaaatcaacaataaatcaatttcccttaaattgaatagtataaatggcatgggaaatatatatgct |
181 |
Q |
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| T |
34710418 |
cctagagatggattcaaaatcaacaataaatcaatttcccttaaattgaatagtataaatggcatgggaaatatatatgct |
34710498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 34713942 - 34714027
Alignment:
| Q |
1 |
agaaagtgcacgttacaatgtgtatgcatgcaaagcatgcaacaaaacattcacttcatctcaagcacttggaggccatagaaaag |
86 |
Q |
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| T |
34713942 |
agaaagtgcacgttacaatgtgtatgcatgcaaaacatgcaaaaaaactttcacttcatttcaagcacttggaggccatagaaaag |
34714027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 181
Target Start/End: Original strand, 34714071 - 34714140
Alignment:
| Q |
112 |
attcaaaatcaacaataaatcaatttcccttaaattgaatagtataaatggcatgggaaatatatatgct |
181 |
Q |
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| T |
34714071 |
attcaaaaccaataataaatcaatttcccttaaattgaatagtataaatggtatgggaaatatatatgct |
34714140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 34406657 - 34406575
Alignment:
| Q |
1 |
agaaagtgcacgttacaatgtgtatgcatgcaaagcatgcaacaaaacattcacttcatctcaagcacttggaggccatagaa |
83 |
Q |
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|||||||| | ||||||||||||||||||||||| |||| |||||| | |||||||||| ||||||||||||||||||||||| |
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| T |
34406657 |
agaaagtgtaggttacaatgtgtatgcatgcaaaacatgtaacaaatctttcacttcatttcaagcacttggaggccatagaa |
34406575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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